def test_shape(ori=0, skew=0, xscale=1, yscale=1, pnum=(1, 1, 1), fnum=1):
df2.figure(fnum=fnum, pnum=pnum)
kpts, sifts = test_keypoint(ori=ori,
skew=skew,
xscale=xscale,
yscale=yscale)
ax = df2.gca()
square_axis(ax)
mpl_keypoint.draw_keypoints(ax,
kpts,
sifts=sifts,
ell_color=df2.ORANGE,
ori=True,
rect_color=df2.DARK_RED,
ori_color=df2.DEEP_PINK,
eig_color=df2.PINK,
rect=True,
eig=True,
bin_color=df2.RED,
arm1_color=df2.YELLOW,
arm2_color=df2.BLACK)
kptsstr = '\n'.join(ktool.get_kpts_strs(kpts))
#print(kptsstr)
df2.upperleft_text(kptsstr)
title = 'xyscale=(%.1f, %.1f),\n skew=%.1f, ori=%.2ftau' % (
xscale, yscale, skew, ori / TAU)
df2.set_title(title)
df2.dark_background()
return kpts, sifts
def plot_annotaiton_gps(X_Data):
""" Plots gps coordinates on a map projection """
from mpl_toolkits.basemap import Basemap
#lat = X_data[1:5, 1]
#lon = X_data[1:5, 2]
lat = X_data[:, 1]
lon = X_data[:, 2]
fig = df2.figure(fnum=1, doclf=True, docla=True)
df2.close_figure(fig)
fig = df2.figure(fnum=1, doclf=True, docla=True)
# setup Lambert Conformal basemap.
m = Basemap(llcrnrlon=lon.min(),
urcrnrlon=lon.max(),
llcrnrlat=lat.min(),
urcrnrlat=lat.max(),
projection='cea',
resolution='h')
# draw coastlines.
#m.drawcoastlines()
#m.drawstates()
# draw a boundary around the map, fill the background.
# this background will end up being the ocean color, since
# the continents will be drawn on top.
#m.bluemarble()
m.drawmapboundary(fill_color='aqua')
m.fillcontinents(color='coral', lake_color='aqua')
# Convert GPS to projected coordinates
x1, y1 = m(lon, lat) # convert to meters # lon==X, lat==Y
m.plot(x1, y1, 'o')
fig.show()
def TEST_QUERY(ibs):
print('[TEST_QUERY]')
valid_aids = ibs.get_valid_aids()
print('[TEST_QUERY] len(valid_aids)=%r' % (len(valid_aids)))
qaid_list = valid_aids[0:1]
print('[TEST_QUERY] len(qaid_list)=%r' % (len(qaid_list)))
ibs._init_query_requestor()
qreq = ibs.qreq
#query_helpers.find_matchable_chips(ibs)
aids = ibs.get_recognition_database_aids()
qres_dict = ibs.query_all(qaid_list)
for qaid in qaid_list:
qres = qres_dict[qaid]
top_aids = qres.get_top_aids(ibs)
top_aids = utool.safe_slice(top_aids, 3)
aid2 = top_aids[0]
fnum = df2.next_fnum()
df2.figure(fnum=fnum, doclf=True)
#viz_matches.show_matches(ibs, qres, aid2, fnum=fnum, in_image=True)
#viz.show_qres(ibs, qres, fnum=fnum, top_aids=top_aids, ensure=False)
interact.ishow_qres(ibs, qres, fnum=fnum, top_aids=top_aids,
ensure=False, annote_mode=1)
df2.set_figtitle('Query Result')
df2.adjust_subplots_safe(top=.8)
return locals()
def show_sv_simple(chip1, chip2, kpts1, kpts2, fm, inliers, mx=None, fnum=1, vert=None, **kwargs):
"""
CommandLine:
python -m plottool.draw_sv --test-show_sv_simple --show
Example:
>>> # DISABLE_DOCTEST
>>> from plottool.draw_sv import * # NOQA
>>> import vtool as vt
>>> kpts1, kpts2, fm, aff_inliers, chip1, chip2, xy_thresh_sqrd = vt.testdata_matching_affine_inliers()
>>> inliers = aff_inliers
>>> mx = None
>>> fnum = 1
>>> vert = None # ut.get_argval('--vert', type_=bool, default=None)
>>> result = show_sv_simple(chip1, chip2, kpts1, kpts2, fm, inliers, mx, fnum, vert=vert)
>>> print(result)
>>> ut.show_if_requested()
"""
import plottool as pt
colors = df2.distinct_colors(2, brightness=.95)
color1, color2 = colors[0:2]
# Begin the drawing
fnum = pt.ensure_fnum(fnum)
df2.figure(fnum=fnum, pnum=(1, 1, 1), docla=True, doclf=True)
#dmkwargs = dict(fs=None, title='Inconsistent Matches', all_kpts=False, draw_lines=True,
# docla=True, draw_border=True, fnum=fnum, pnum=(1, 1, 1), colors=df2.ORANGE)
inlier_mask = vt.index_to_boolmask(inliers, maxval=len(fm))
fm_inliers = fm.compress(inlier_mask, axis=0)
fm_outliers = fm.compress(np.logical_not(inlier_mask), axis=0)
ax, xywh1, xywh2 = df2.show_chipmatch2(chip1, chip2, vert=vert)
fmatch_kw = dict(ell_linewidth=2, ell_alpha=.7, line_alpha=.7)
df2.plot_fmatch(xywh1, xywh2, kpts1, kpts2, fm_inliers, colors=color1, **fmatch_kw)
df2.plot_fmatch(xywh1, xywh2, kpts1, kpts2, fm_outliers, colors=color2, **fmatch_kw)
def plot_keypoint_scales(hs, fnum=1):
print('[dev] plot_keypoint_scales()')
cx2_kpts = hs.feats.cx2_kpts
if len(cx2_kpts) == 0:
hs.refresh_features()
cx2_kpts = hs.feats.cx2_kpts
cx2_nFeats = map(len, cx2_kpts)
kpts = np.vstack(cx2_kpts)
print('[dev] --- LaTeX --- ')
_printopts = np.get_printoptions()
np.set_printoptions(precision=3)
print(util_latex.latex_scalar(r'\# keypoints, ', len(kpts)))
print(util_latex.latex_mystats(r'\# keypoints per image', cx2_nFeats))
scales = ktool.get_scales(kpts)
scales = np.array(sorted(scales))
print(util_latex.latex_mystats(r'keypoint scale', scales))
np.set_printoptions(**_printopts)
print('[dev] ---/LaTeX --- ')
#
df2.figure(fnum=fnum, docla=True, title='sorted scales')
df2.plot(scales)
df2.adjust_subplots_safe()
#ax = df2.gca()
#ax.set_yscale('log')
#ax.set_xscale('log')
#
fnum += 1
df2.figure(fnum=fnum, docla=True, title='hist scales')
df2.show_histogram(scales, bins=20)
df2.adjust_subplots_safe()
#ax = df2.gca()
#ax.set_yscale('log')
#ax.set_xscale('log')
return fnum
def TEST_QUERY_COMP(ibs):
r"""
CommandLine:
python -m ibeis.tests.test_ibs_query_components --test-TEST_QUERY_COMP
Example:
>>> # ENABLE_DOCTEST
>>> from ibeis.tests.test_ibs_query_components import * # NOQA
>>> import ibeis
>>> # build test data
>>> ibs = ibeis.opendb('testdb1')
>>> # execute function
>>> TEST_QUERY_COMP(ibs)
"""
print('[TEST_QUERY_COMP]')
aids = ibs.get_valid_aids()
index = 0
index = utool.get_argval('--index', type_=int, default=index)
qaid_list = utool.safe_slice(aids, index, index + 1)
print('[TEST_QUERY_COMP] len(qaid_list)=%r' % (qaid_list))
try:
comp_locals_ = query_helpers.get_query_components(ibs, qaid_list)
qres_dict = OrderedDict([
('ORIG', comp_locals_['qres_ORIG']),
('FILT', comp_locals_['qres_FILT']),
('SVER', comp_locals_['qres_SVER']),
])
top_aids = qres_dict['SVER'].get_top_aids()
aid2 = top_aids[0]
except Exception as ex:
if 'qres_dict' in vars():
for name, qres in qres_dict.items():
print(name)
print(qres.get_inspect_str())
utool.printex(ex, keys=['qaid_list'], pad_stdout=True)
raise
for px, (lbl, qres) in enumerate(six.iteritems(qres_dict)):
print(lbl)
fnum = df2.next_fnum()
df2.figure(fnum=fnum, doclf=True)
qres.ishow_top(ibs, fnum=fnum, top_aids=top_aids, ensure=False)
df2.set_figtitle(lbl)
df2.adjust_subplots_safe(top=.8)
fnum = df2.next_fnum()
qaid2_svtups = comp_locals_['qaid2_svtups']
qaid2_chipmatch_FILT = comp_locals_['qaid2_chipmatch_FILT']
aid1 = qaid = comp_locals_['qaid']
aid2_svtup = qaid2_svtups[aid1]
chipmatch_FILT = qaid2_chipmatch_FILT[aid1]
viz.show_sver(ibs, aid1, aid2, chipmatch_FILT, aid2_svtup, fnum=fnum)
return locals()
def chipmatch_view(self, pnum=(1, 1, 1), **kwargs_):
"""
just visualizes the matches using some type of lines
CommandLine:
python -m ibeis.viz.interact.interact_matches --test-chipmatch_view --show
Example:
>>> # DISABLE_DOCTEST
>>> from ibeis.viz.interact.interact_matches import * # NOQA
>>> self = testdata_match_interact()
>>> self.chipmatch_view()
>>> pt.show_if_requested()
"""
ibs = self.ibs
aid = self.daid
qaid = self.qaid
fnum = self.fnum
figtitle = self.figtitle
xywh2_ptr = self.xywh2_ptr
# drawing mode draw: with/without lines/feats
mode = self.mode
draw_ell = mode >= 1
draw_lines = mode == 2
self.mode = (self.mode + 1) % 3
df2.figure(fnum=fnum, docla=True, doclf=True)
show_matches_kw = self.kwargs.copy()
show_matches_kw.update(
dict(fnum=fnum,
pnum=pnum,
draw_lines=draw_lines,
draw_ell=draw_ell,
colorbar_=True,
vert=self.vert))
show_matches_kw.update(kwargs_)
if self.use_homog:
show_matches_kw['H1'] = self.H1
#show_matches_kw['score'] = self.score
show_matches_kw['rawscore'] = self.score
#ut.embed()
show_matches_kw['aid2_raw_rank'] = self.rank
tup = viz.viz_matches.show_matches2(ibs,
self.qaid,
self.daid,
self.fm,
self.fs,
qreq_=self.qreq_,
**show_matches_kw)
ax, xywh1, xywh2 = tup
xywh2_ptr[0] = xywh2
df2.set_figtitle(figtitle + ' ' + vh.get_vsstr(qaid, aid))
def show_sv_simple(chip1,
chip2,
kpts1,
kpts2,
fm,
inliers,
mx=None,
fnum=1,
vert=None,
**kwargs):
"""
CommandLine:
python -m plottool.draw_sv --test-show_sv_simple --show
Example:
>>> # DISABLE_DOCTEST
>>> from plottool.draw_sv import * # NOQA
>>> import vtool as vt
>>> kpts1, kpts2, fm, aff_inliers, chip1, chip2, xy_thresh_sqrd = vt.testdata_matching_affine_inliers()
>>> inliers = aff_inliers
>>> mx = None
>>> fnum = 1
>>> vert = None # ut.get_argval('--vert', type_=bool, default=None)
>>> result = show_sv_simple(chip1, chip2, kpts1, kpts2, fm, inliers, mx, fnum, vert=vert)
>>> print(result)
>>> ut.show_if_requested()
"""
import plottool as pt
colors = df2.distinct_colors(2, brightness=.95)
color1, color2 = colors[0:2]
# Begin the drawing
fnum = pt.ensure_fnum(fnum)
df2.figure(fnum=fnum, pnum=(1, 1, 1), docla=True, doclf=True)
#dmkwargs = dict(fs=None, title='Inconsistent Matches', all_kpts=False, draw_lines=True,
# docla=True, draw_border=True, fnum=fnum, pnum=(1, 1, 1), colors=df2.ORANGE)
inlier_mask = vt.index_to_boolmask(inliers, maxval=len(fm))
fm_inliers = fm.compress(inlier_mask, axis=0)
fm_outliers = fm.compress(np.logical_not(inlier_mask), axis=0)
ax, xywh1, xywh2 = df2.show_chipmatch2(chip1, chip2, vert=vert)
fmatch_kw = dict(ell_linewidth=2, ell_alpha=.7, line_alpha=.7)
df2.plot_fmatch(xywh1,
xywh2,
kpts1,
kpts2,
fm_inliers,
colors=color1,
**fmatch_kw)
df2.plot_fmatch(xywh1,
xywh2,
kpts1,
kpts2,
fm_outliers,
colors=color2,
**fmatch_kw)
def _chip_view(mode=0, pnum=(1, 1, 1), **kwargs):
print('... _chip_view mode=%r' % mode_ptr[0])
kwargs['ell'] = mode_ptr[0] == 1
kwargs['pts'] = mode_ptr[0] == 2
if not ischild:
df2.figure(fnum=fnum, pnum=pnum, docla=True, doclf=True)
# Toggle no keypoints view
viz.show_chip(ibs, aid, fnum=fnum, pnum=pnum, config2_=config2_,
**kwargs)
df2.set_figtitle('Chip View')
def _chip_view(mode=0, pnum=(1, 1, 1), **kwargs):
print('... _chip_view mode=%r' % mode_ptr[0])
kwargs['ell'] = mode_ptr[0] == 1
kwargs['pts'] = mode_ptr[0] == 2
if not ischild:
df2.figure(fnum=fnum, pnum=pnum, docla=True, doclf=True)
# Toggle no keypoints view
viz.show_chip(ibs, aid, fnum=fnum, pnum=pnum, config2_=config2_,
**kwargs)
df2.set_figtitle('Chip View')
def plot_rank_histogram(allres, orgres_type):
print('[viz] plotting %r rank histogram' % orgres_type)
ranks = allres.__dict__[orgres_type].ranks
label = 'P(rank | ' + orgres_type + ' match)'
title = orgres_type + ' match rankings histogram\n' + allres.title_suffix
df2.figure(fnum=FIGNUM, doclf=True, title=title)
df2.draw_histpdf(ranks, label=label) # FIXME
df2.set_xlabel('ground truth ranks')
df2.set_ylabel('frequency')
df2.legend()
__dump_or_browse(allres.ibs, 'rankviz')
def plot_rank_histogram(allres, orgres_type):
print('[viz] plotting %r rank histogram' % orgres_type)
ranks = allres.__dict__[orgres_type].ranks
label = 'P(rank | ' + orgres_type + ' match)'
title = orgres_type + ' match rankings histogram\n' + allres.title_suffix
df2.figure(fnum=FIGNUM, doclf=True, title=title)
df2.draw_histpdf(ranks, label=label) # FIXME
df2.set_xlabel('ground truth ranks')
df2.set_ylabel('frequency')
df2.legend()
__dump_or_browse(allres.ibs, 'rankviz')
def TEST_QUERY(ibs):
r"""
CommandLine:
python -m ibeis.tests.test_ibs_query --test-TEST_QUERY
python -m ibeis.tests.test_ibs_query --test-TEST_QUERY --show
Example:
>>> # ENABLE_DOCTEST
>>> from ibeis.tests.test_ibs_query import * # NOQA
>>> import plottool as pt
>>> import ibeis
>>> ibs = ibeis.opendb('testdb1')
>>> TEST_QUERY(ibs)
>>> pt.show_if_requested()
"""
print('[TEST_QUERY]')
daid_list = ibs.get_valid_aids()
print('[TEST_QUERY] len(daid_list)=%r' % (len(daid_list)))
qaid_list = daid_list[0:1]
print('[TEST_QUERY] len(qaid_list)=%r' % (len(qaid_list)))
qres_list = ibs.query_chips(qaid_list, daid_list, use_cache=False, use_bigcache=False)
qres_list_ = ibs.query_chips(qaid_list, daid_list)
try:
vals1 = qres_list
vals2 = qres_list_
assert len(vals1) == 1, 'expected 1 qres in result'
assert len(vals2) == 1, 'expected 1 qres in result'
#assert list(qres_dict.keys()) == list(qres_dict_.keys()), 'qres cache doesnt work. key error'
qres1 = vals1[0]
qres2 = vals2[0]
inspect_str1 = qres1.get_inspect_str(ibs)
inspect_str2 = qres2.get_inspect_str(ibs)
print(inspect_str1)
assert inspect_str1 == inspect_str2, 'qres cache inconsistency'
assert vals1 == vals2, 'qres cache doesnt work. val error'
except AssertionError as ex:
utool.printex(ex, key_list=list(locals().keys()))
raise
if ut.show_was_requested():
for qres in qres_list:
top_aids = qres.get_top_aids()
#top_aids = utool.safe_slice(top_aids, 3)
aid2 = top_aids[0]
fnum = df2.next_fnum()
df2.figure(fnum=fnum, doclf=True)
qres.ishow_top(ibs, fnum=fnum, top_aids=top_aids, ensure=False, annot_mode=1)
df2.set_figtitle('Query Result')
df2.adjust_subplots_safe(top=.8)
return locals()
def dump_orgres_matches(allres, orgres_type):
orgres = allres.__dict__[orgres_type]
ibs = allres.ibs
qrid2_qres = allres.qrid2_qres
# loop over each query / result of interest
for qrid, rid, score, rank in orgres.iter():
query_gname, _ = os.path.splitext(ibs.tables.gx2_gname[ibs.tables.cx2_gx[qrid]])
result_gname, _ = os.path.splitext(ibs.tables.gx2_gname[ibs.tables.cx2_gx[rid]])
qres = qrid2_qres[qrid]
df2.figure(fnum=1, plotnum=121)
df2.show_matches_annote_res(qres, ibs, rid, fnum=1, plotnum=121)
big_title = 'score=%.2f_rank=%d_q=%s_r=%s' % (score, rank, query_gname, result_gname)
df2.set_figtitle(big_title)
viz.__dump_or_browse(allres, orgres_type + '_matches' + allres.title_suffix)
def _chipmatch_view(pnum=(1, 1, 1), **kwargs):
mode = annote_ptr[0] # drawing mode draw: with/without lines/feats
draw_ell = mode >= 1
draw_lines = mode == 2
annote_ptr[0] = (annote_ptr[0] + 1) % 3
df2.figure(fnum=fnum, docla=True, doclf=True)
# TODO RENAME This to remove qres and rectify with show_matches
tup = viz.show_matches(ibs, qres, aid, fnum=fnum, pnum=pnum,
draw_lines=draw_lines, draw_ell=draw_ell,
colorbar_=True, **kwargs)
ax, xywh1, xywh2 = tup
xywh2_ptr[0] = xywh2
df2.set_figtitle(figtitle + ' ' + vh.get_vsstr(qaid, aid))
def plot_score_pdf(allres, orgres_type, colorx=0.0, variation_truncate=False):
print('[viz] plotting ' + orgres_type + ' score pdf')
title = orgres_type + ' match score frequencies\n' + allres.title_suffix
scores = allres.__dict__[orgres_type].scores
print('[viz] len(scores) = %r ' % (len(scores),))
label = 'P(score | %r)' % orgres_type
df2.figure(fnum=FIGNUM, doclf=True, title=title)
df2.draw_pdf(scores, label=label, colorx=colorx)
if variation_truncate:
df2.variation_trunctate(scores)
#df2.variation_trunctate(false.scores)
df2.set_xlabel('score')
df2.set_ylabel('frequency')
df2.legend()
__dump_or_browse(allres.ibs, 'scoreviz')
def plot_score_pdf(allres, orgres_type, colorx=0.0, variation_truncate=False):
print('[viz] plotting ' + orgres_type + ' score pdf')
title = orgres_type + ' match score frequencies\n' + allres.title_suffix
scores = allres.__dict__[orgres_type].scores
print('[viz] len(scores) = %r ' % (len(scores), ))
label = 'P(score | %r)' % orgres_type
df2.figure(fnum=FIGNUM, doclf=True, title=title)
df2.draw_pdf(scores, label=label, colorx=colorx)
if variation_truncate:
df2.variation_trunctate(scores)
#df2.variation_trunctate(false.scores)
df2.set_xlabel('score')
df2.set_ylabel('frequency')
df2.legend()
__dump_or_browse(allres.ibs, 'scoreviz')
def chipmatch_view(self, pnum=(1, 1, 1), **kwargs_):
"""
just visualizes the matches using some type of lines
CommandLine:
python -m ibeis.viz.interact.interact_matches --test-chipmatch_view --show
Example:
>>> # DISABLE_DOCTEST
>>> from ibeis.viz.interact.interact_matches import * # NOQA
>>> self = testdata_match_interact()
>>> self.chipmatch_view()
>>> pt.show_if_requested()
"""
ibs = self.ibs
aid = self.daid
qaid = self.qaid
fnum = self.fnum
figtitle = self.figtitle
xywh2_ptr = self.xywh2_ptr
# drawing mode draw: with/without lines/feats
mode = self.mode
draw_ell = mode >= 1
draw_lines = mode == 2
self.mode = (self.mode + 1) % 3
df2.figure(fnum=fnum, docla=True, doclf=True)
show_matches_kw = self.kwargs.copy()
show_matches_kw.update(
dict(fnum=fnum, pnum=pnum, draw_lines=draw_lines,
draw_ell=draw_ell, colorbar_=True, vert=self.vert))
show_matches_kw.update(kwargs_)
if self.use_homog:
show_matches_kw['H1'] = self.H1
#show_matches_kw['score'] = self.score
show_matches_kw['rawscore'] = self.score
#ut.embed()
show_matches_kw['aid2_raw_rank'] = self.rank
tup = viz.viz_matches.show_matches2(ibs, self.qaid, self.daid,
self.fm, self.fs,
qreq_=self.qreq_,
**show_matches_kw)
ax, xywh1, xywh2 = tup
xywh2_ptr[0] = xywh2
df2.set_figtitle(figtitle + ' ' + vh.get_vsstr(qaid, aid))
def test_viz_image(imgpaths):
nImgs = len(imgpaths)
assert len(imgpaths) < 20, '%d > 20 out of scope of this test' % nImgs
tau = np.pi * 2
fnum = 1
img_list = imread_many(imgpaths)
nRows, nCols = ph.get_square_row_cols(nImgs)
print('[viz*] r=%r, c=%r' % (nRows, nCols))
#gs2 = gridspec.GridSpec(nRows, nCols)
pnum_ = df2.get_pnum_func(nRows, nCols)
fig = df2.figure(fnum=fnum, pnum=pnum_(0))
fig.clf()
for px, img in enumerate(img_list):
title = 'test title'
bbox_list = [dummy_bbox(img),
dummy_bbox(img, (-.25, -.25), .1)]
theta_list = [tau * .7, tau * .9]
sel_list = [True, False]
label_list = ['test label', 'lbl2']
viz_image2.show_image(img,
bbox_list=bbox_list,
title=title,
sel_list=sel_list,
label_list=label_list,
theta_list=theta_list,
fnum=fnum,
pnum=pnum_(px))
def plot_rank_stem(allres, orgres_type='true'):
print('[viz] plotting rank stem')
# Visualize rankings with the stem plot
ibs = allres.ibs
title = orgres_type + 'rankings stem plot\n' + allres.title_suffix
orgres = allres.__dict__[orgres_type]
df2.figure(fnum=FIGNUM, doclf=True, title=title)
x_data = orgres.qcxs
y_data = orgres.ranks
df2.draw_stems(x_data, y_data)
slice_num = int(np.ceil(np.log10(len(orgres.qcxs))))
df2.set_xticks(ibs.test_sample_cx[::slice_num])
df2.set_xlabel('query chip indeX (qcx)')
df2.set_ylabel('groundtruth chip ranks')
#df2.set_yticks(list(seen_ranks))
__dump_or_browse(allres.ibs, 'rankviz')
def show_name(ibs, nid, nid2_aids=None, in_image=True, fnum=0, sel_aids=[], subtitle='',
annote=False, **kwargs):
print('[viz] show_name nid=%r' % nid)
aid_list = ibs.get_name_aids(nid)
name = ibs.get_name_text((nid,))
ibsfuncs.ensure_annotation_data(ibs, aid_list, chips=(not in_image or annote), feats=annote)
print('[viz] show_name=%r aid_list=%r' % (name, aid_list))
nAids = len(aid_list)
if nAids > 0:
nRows, nCols = ph.get_square_row_cols(nAids)
print('[viz*] r=%r, c=%r' % (nRows, nCols))
#gs2 = gridspec.GridSpec(nRows, nCols)
pnum_ = df2.get_pnum_func(nRows, nCols)
fig = df2.figure(fnum=fnum, pnum=pnum_(0), **kwargs)
fig.clf()
# Trigger computation of all chips in parallel
for px, aid in enumerate(aid_list):
show_chip(ibs, aid=aid, pnum=pnum_(px), annote=annote, in_image=in_image)
if aid in sel_aids:
ax = df2.gca()
df2.draw_border(ax, df2.GREEN, 4)
#plot_aid3(ibs, aid)
if isinstance(nid, np.ndarray):
nid = nid[0]
if isinstance(name, np.ndarray):
name = name[0]
else:
df2.imshow_null(fnum=fnum, **kwargs)
figtitle = 'Name View nid=%r name=%r' % (nid, name)
df2.set_figtitle(figtitle)
def dump_orgres_matches(allres, orgres_type):
orgres = allres.__dict__[orgres_type]
ibs = allres.ibs
qcx2_res = allres.qcx2_res
# loop over each query / result of interest
for qcx, cx, score, rank in orgres.iter():
query_gname, _ = os.path.splitext(ibs.tables.gx2_gname[ibs.tables.cx2_gx[qcx]])
result_gname, _ = os.path.splitext(ibs.tables.gx2_gname[ibs.tables.cx2_gx[cx]])
res = qcx2_res[qcx]
df2.figure(fnum=FIGNUM, pnum=121)
df2.show_matches3(res, ibs, cx, SV=False, fnum=FIGNUM, pnum=121)
df2.show_matches3(res, ibs, cx, SV=True, fnum=FIGNUM, pnum=122)
big_title = 'score=%.2f_rank=%d_q=%s_r=%s' % (score, rank, query_gname,
result_gname)
df2.set_figtitle(big_title)
__dump_or_browse(allres.ibs, orgres_type + '_matches' + allres.title_suffix)
def plot_rank_stem(allres, orgres_type='true'):
print('[viz] plotting rank stem')
# Visualize rankings with the stem plot
ibs = allres.ibs
title = orgres_type + 'rankings stem plot\n' + allres.title_suffix
orgres = allres.__dict__[orgres_type]
df2.figure(fnum=FIGNUM, doclf=True, title=title)
x_data = orgres.qcxs
y_data = orgres.ranks
df2.draw_stems(x_data, y_data)
slice_num = int(np.ceil(np.log10(len(orgres.qcxs))))
df2.set_xticks(ibs.test_sample_cx[::slice_num])
df2.set_xlabel('query chip indeX (qcx)')
df2.set_ylabel('groundtruth chip ranks')
#df2.set_yticks(list(seen_ranks))
__dump_or_browse(allres.ibs, 'rankviz')
def dump_orgres_matches(allres, orgres_type):
orgres = allres.__dict__[orgres_type]
ibs = allres.ibs
qrid2_qres = allres.qrid2_qres
# loop over each query / result of interest
for qrid, rid, score, rank in orgres.iter():
query_gname, _ = os.path.splitext(
ibs.tables.gx2_gname[ibs.tables.cx2_gx[qrid]])
result_gname, _ = os.path.splitext(
ibs.tables.gx2_gname[ibs.tables.cx2_gx[rid]])
qres = qrid2_qres[qrid]
df2.figure(fnum=1, plotnum=121)
df2.show_matches_annote_res(qres, ibs, rid, fnum=1, plotnum=121)
big_title = 'score=%.2f_rank=%d_q=%s_r=%s' % (score, rank, query_gname,
result_gname)
df2.set_figtitle(big_title)
viz.__dump_or_browse(allres,
orgres_type + '_matches' + allres.title_suffix)
def plot_seperability(hs, qcx_list, fnum=1):
print('[dev] plot_seperability(fnum=%r)' % fnum)
qcx2_res = get_qcx2_res(hs, qcx_list)
qcx2_separability = get_seperatbility(hs, qcx2_res)
sep_score_list = qcx2_separability.values()
df2.figure(fnum=fnum, doclf=True, docla=True)
print('[dev] seperability stats: ' + utool.stats_str(sep_score_list))
sorted_sepscores = sorted(sep_score_list)
df2.plot(sorted_sepscores, color=df2.DEEP_PINK, label='seperation score',
yscale=YSCALE)
df2.set_xlabel('true chipmatch index (%d)' % len(sep_score_list))
df2.set_logyscale_from_data(sorted_sepscores)
df2.dark_background()
rowid = qcx2_res.itervalues().next().rowid
df2.set_figtitle('seperability\n' + rowid)
df2.legend()
fnum += 1
return fnum
def TEST_QUERY_COMP(ibs):
print('[TEST_QUERY_COMP]')
qaid_list = ibs.get_valid_aids()[0:1]
print('[TEST_QUERY_COMP] len(qaid_list)=%r' % (qaid_list))
ibs._init_query_requestor()
qreq = ibs.qreq
#query_helpers.find_matchable_chips(ibs)
aids = ibs.get_recognition_database_aids()
index = 0
index = utool.get_arg('--index', type_=int, default=index)
qaid_list = utool.safe_slice(aids, index, index + 1)
comp_locals_ = query_helpers.get_query_components(ibs, qaid_list)
qres_dict = OrderedDict([
('ORIG', comp_locals_['qres_ORIG']),
('FILT', comp_locals_['qres_FILT']),
('SVER', comp_locals_['qres_SVER']),
])
top_aids = qres_dict['SVER'].get_top_aids(ibs)
top_aids = utool.safe_slice(top_aids, 3)
aid2 = top_aids[0]
for px, (lbl, qres) in enumerate(six.iteritems(qres_dict)):
print(lbl)
fnum = df2.next_fnum()
df2.figure(fnum=fnum, doclf=True)
#viz_matches.show_matches(ibs, qres, aid2, fnum=fnum, in_image=True)
#viz.show_qres(ibs, qres, fnum=fnum, top_aids=top_aids, ensure=False)
interact.ishow_qres(ibs, qres, fnum=fnum, top_aids=top_aids, ensure=False)
df2.set_figtitle(lbl)
df2.adjust_subplots_safe(top=.8)
fnum = df2.next_fnum()
qaid2_svtups = comp_locals_['qaid2_svtups']
qaid2_chipmatch_FILT = comp_locals_['qaid2_chipmatch_FILT']
aid1 = qaid = comp_locals_['qaid']
aid2_svtup = qaid2_svtups[aid1]
chipmatch_FILT = qaid2_chipmatch_FILT[aid1]
viz.show_sver(ibs, aid1, aid2, chipmatch_FILT, aid2_svtup, fnum=fnum)
return locals()
def _select_ith_match(mx, qaid, aid):
#----------------------
# Get info for the _select_ith_match plot
annote_ptr[0] = 1
# Get the mx-th feature match
aid1, aid2 = qaid, aid
fx1, fx2 = fm[mx]
fscore2 = qres.aid2_fs[aid2][mx]
fk2 = qres.aid2_fk[aid2][mx]
kpts1, kpts2 = ibs.get_annot_kpts([aid1, aid2])
desc1, desc2 = ibs.get_annot_desc([aid1, aid2])
kp1, kp2 = kpts1[fx1], kpts2[fx2]
sift1, sift2 = desc1[fx1], desc2[fx2]
info1 = '\nquery'
info2 = '\nk=%r fscore=%r' % (fk2, fscore2)
last_state.last_fx = fx1
# Extracted keypoints to draw
extracted_list = [(rchip1, kp1, sift1, fx1, aid1, info1),
(rchip2, kp2, sift2, fx2, aid2, info2)]
# Normalizng Keypoint
if hasattr(qres, 'filt2_meta') and 'lnbnn' in qres.filt2_meta:
qfx2_norm = qres.filt2_meta['lnbnn']
# Normalizing chip and feature
(aid3, fx3, normk) = qfx2_norm[fx1]
rchip3 = ibs.get_annot_chips(aid3)
kp3 = ibs.get_annot_kpts(aid3)[fx3]
sift3 = ibs.get_annot_desc(aid3)[fx3]
info3 = '\nnorm %s k=%r' % (vh.get_aidstrs(aid3), normk)
extracted_list.append((rchip3, kp3, sift3, fx3, aid3, info3))
else:
print('WARNING: meta doesnt exist')
#----------------------
# Draw the _select_ith_match plot
nRows, nCols = len(extracted_list) + same_fig, 3
# Draw matching chips and features
sel_fm = np.array([(fx1, fx2)])
pnum1 = (nRows, 1, 1) if same_fig else (1, 1, 1)
_chipmatch_view(pnum1, vert=False, ell_alpha=.4, ell_linewidth=1.8,
colors=df2.BLUE, sel_fm=sel_fm, **kwargs)
# Draw selected feature matches
px = nCols * same_fig # plot offset
prevsift = None
if not same_fig:
fnum2 = fnum + len(viz.FNUMS)
fig2 = df2.figure(fnum=fnum2, docla=True, doclf=True)
else:
fnum2 = fnum
for (rchip, kp, sift, fx, aid, info) in extracted_list:
px = draw_feat_row(rchip, fx, kp, sift, fnum2, nRows, nCols, px,
prevsift=prevsift, aid=aid, info=info)
prevsift = sift
if not same_fig:
ih.connect_callback(fig2, 'button_press_event', _click_matches_click)
df2.set_figtitle(figtitle + vh.get_vsstr(qaid, aid))
def test_shape(ori=0, skew=0, xscale=1, yscale=1, pnum=(1, 1, 1), fnum=1):
df2.figure(fnum=fnum, pnum=pnum)
kpts, sifts = test_keypoint(ori=ori, skew=skew, xscale=xscale, yscale=yscale)
ax = df2.gca()
square_axis(ax)
mpl_keypoint.draw_keypoints(ax, kpts, sifts=sifts, ell_color=df2.ORANGE, ori=True,
rect_color=df2.DARK_RED,
ori_color=df2.DEEP_PINK, eig_color=df2.PINK,
rect=True, eig=True, bin_color=df2.RED,
arm1_color=df2.YELLOW, arm2_color=df2.BLACK)
kptsstr = '\n'.join(ktool.get_kpts_strs(kpts))
#print(kptsstr)
df2.upperleft_text(kptsstr)
title = 'xyscale=(%.1f, %.1f),\n skew=%.1f, ori=%.2ftau' % (xscale, yscale, skew, ori / TAU)
df2.set_title(title)
df2.dark_background()
return kpts, sifts
def dump_orgres_matches(allres, orgres_type):
orgres = allres.__dict__[orgres_type]
ibs = allres.ibs
qcx2_res = allres.qcx2_res
# loop over each query / result of interest
for qcx, cx, score, rank in orgres.iter():
query_gname, _ = os.path.splitext(
ibs.tables.gx2_gname[ibs.tables.cx2_gx[qcx]])
result_gname, _ = os.path.splitext(
ibs.tables.gx2_gname[ibs.tables.cx2_gx[cx]])
res = qcx2_res[qcx]
df2.figure(fnum=FIGNUM, pnum=121)
df2.show_matches3(res, ibs, cx, SV=False, fnum=FIGNUM, pnum=121)
df2.show_matches3(res, ibs, cx, SV=True, fnum=FIGNUM, pnum=122)
big_title = 'score=%.2f_rank=%d_q=%s_r=%s' % (score, rank, query_gname,
result_gname)
df2.set_figtitle(big_title)
__dump_or_browse(allres.ibs,
orgres_type + '_matches' + allres.title_suffix)
def plot_tt_bt_tf_matches(ibs, allres, qcx):
#print('Visualizing result: ')
#res.printme()
res = allres.qcx2_res[qcx]
ranks = (allres.top_true_qcx_arrays[0][qcx],
allres.bot_true_qcx_arrays[0][qcx],
allres.top_false_qcx_arrays[0][qcx])
#scores = (allres.top_true_qcx_arrays[1][qcx],
#allres.bot_true_qcx_arrays[1][qcx],
#allres.top_false_qcx_arrays[1][qcx])
cxs = (allres.top_true_qcx_arrays[2][qcx],
allres.bot_true_qcx_arrays[2][qcx],
allres.top_false_qcx_arrays[2][qcx])
titles = ('best True rank=' + str(ranks[0]) + ' ',
'worst True rank=' + str(ranks[1]) + ' ',
'best False rank=' + str(ranks[2]) + ' ')
df2.figure(fnum=1, pnum=231)
res.plot_matches(res,
ibs,
cxs[0],
False,
fnum=1,
pnum=131,
title_aug=titles[0])
res.plot_matches(res,
ibs,
cxs[1],
False,
fnum=1,
pnum=132,
title_aug=titles[1])
res.plot_matches(res,
ibs,
cxs[2],
False,
fnum=1,
pnum=133,
title_aug=titles[2])
fig_title = 'fig q' + ibs.cidstr(
qcx) + ' TT BT TF -- ' + allres.title_suffix
df2.set_figtitle(fig_title)
def sv_view(self, dodraw=True):
""" spatial verification view
"""
#fnum = viz.FNUMS['special']
aid = self.daid
fnum = pt.next_fnum()
fig = df2.figure(fnum=fnum, docla=True, doclf=True)
ih.disconnect_callback(fig, 'button_press_event')
viz.viz_sver.show_sver(self.ibs, self.qaid, aid2=aid, fnum=fnum)
if dodraw:
viz.draw()
def sv_view(self, dodraw=True):
""" spatial verification view
"""
#fnum = viz.FNUMS['special']
aid = self.daid
fnum = pt.next_fnum()
fig = df2.figure(fnum=fnum, docla=True, doclf=True)
ih.disconnect_callback(fig, 'button_press_event')
viz.viz_sver.show_sver(self.ibs, self.qaid, aid2=aid, fnum=fnum)
if dodraw:
viz.draw()
def TEST_figure1(wpatch, gradx, grady, gmag, gori, hist, centers):
from plottool import draw_func2 as df2
import plottool
import vtool.patch as ptool
print('[rotinvar] 4) Draw histogram with interpolation annotations')
fnum = 1
gorimag = plottool.color_orimag(gori, gmag, True)
nRow, nCol = (2, 7)
df2.figure(fnum=1, pnum=(nRow, 1, nRow), doclf=True, docla=True)
plottool.draw_hist_subbin_maxima(hist, centers)
df2.set_xlabel('grad orientation (radians)')
df2.set_ylabel('grad magnitude')
df2.set_title('dominant orientations')
print('[rotinvar] 5) Show patch, gradients, magintude, and orientation')
df2.imshow(wpatch, pnum=(nRow, nCol, 1), fnum=fnum, title='patch')
df2.draw_vector_field(gradx,
grady,
pnum=(nRow, nCol, 2),
fnum=fnum,
title='gori (vec)')
df2.imshow(gorimag, pnum=(nRow, nCol, 3), fnum=fnum, title='gori (col)')
df2.imshow(np.abs(gradx), pnum=(nRow, nCol, 4), fnum=fnum, title='gradx')
df2.imshow(np.abs(grady), pnum=(nRow, nCol, 5), fnum=fnum, title='grady')
df2.imshow(gmag, pnum=(nRow, nCol, 6), fnum=fnum, title='gmag')
gpatch = ptool.gaussian_patch(shape=gori.shape)
df2.imshow(gpatch * 255,
pnum=(nRow, nCol, 7),
fnum=fnum,
title='gauss weights',
cmap_='hot')
#gpatch3 = np.dstack((gpatch, gpatch, gpatch))
#df2.draw_vector_field(gradx * gpatch, grady * gpatch, pnum=(nRow, nCol, 8), fnum=fnum, title='gori (vec)')
#df2.imshow(gorimag * gpatch3, pnum=(nRow, nCol, 9), fnum=fnum, title='gori (col)')
#df2.imshow(gradx * gpatch, pnum=(nRow, nCol, 10), fnum=fnum, title='gradx')
#df2.imshow(grady * gpatch, pnum=(nRow, nCol, 11), fnum=fnum, title='grady')
#df2.imshow(gmag * gpatch, pnum=(nRow, nCol, 12), fnum=fnum, title='gmag')
return locals()
def plot_tt_bt_tf_matches(ibs, allres, qcx):
#print('Visualizing result: ')
#res.printme()
res = allres.qcx2_res[qcx]
ranks = (allres.top_true_qcx_arrays[0][qcx],
allres.bot_true_qcx_arrays[0][qcx],
allres.top_false_qcx_arrays[0][qcx])
#scores = (allres.top_true_qcx_arrays[1][qcx],
#allres.bot_true_qcx_arrays[1][qcx],
#allres.top_false_qcx_arrays[1][qcx])
cxs = (allres.top_true_qcx_arrays[2][qcx],
allres.bot_true_qcx_arrays[2][qcx],
allres.top_false_qcx_arrays[2][qcx])
titles = ('best True rank=' + str(ranks[0]) + ' ',
'worst True rank=' + str(ranks[1]) + ' ',
'best False rank=' + str(ranks[2]) + ' ')
df2.figure(fnum=1, pnum=231)
res.plot_matches(res, ibs, cxs[0], False, fnum=1, pnum=131, title_aug=titles[0])
res.plot_matches(res, ibs, cxs[1], False, fnum=1, pnum=132, title_aug=titles[1])
res.plot_matches(res, ibs, cxs[2], False, fnum=1, pnum=133, title_aug=titles[2])
fig_title = 'fig q' + ibs.cidstr(qcx) + ' TT BT TF -- ' + allres.title_suffix
df2.set_figtitle(fig_title)
def plot_score_matrix(allres):
print('[viz] plotting score matrix')
score_matrix = allres.score_matrix
title = 'Score Matrix\n' + allres.title_suffix
# Find inliers
#inliers = util.find_std_inliers(score_matrix)
#max_inlier = score_matrix[inliers].max()
# Trunate above 255
score_img = np.copy(score_matrix)
#score_img[score_img < 0] = 0
#score_img[score_img > 255] = 255
#dim = 0
#score_img = util.norm_zero_one(score_img, dim=dim)
# Make colors
scores = score_img.flatten()
colors = df2.scores_to_color(scores, logscale=True)
cmap = df2.scores_to_cmap(scores, colors)
df2.figure(fnum=FIGNUM, doclf=True, title=title)
# Show score matrix
df2.imshow(score_img, fnum=FIGNUM, cmap=cmap)
# Colorbar
df2.colorbar(scores, colors)
df2.set_xlabel('database')
df2.set_ylabel('queries')
def plot_score_matrix(allres):
print('[viz] plotting score matrix')
score_matrix = allres.score_matrix
title = 'Score Matrix\n' + allres.title_suffix
# Find inliers
#inliers = util.find_std_inliers(score_matrix)
#max_inlier = score_matrix[inliers].max()
# Trunate above 255
score_img = np.copy(score_matrix)
#score_img[score_img < 0] = 0
#score_img[score_img > 255] = 255
#dim = 0
#score_img = util.norm_zero_one(score_img, dim=dim)
# Make colors
scores = score_img.flatten()
colors = df2.scores_to_color(scores, logscale=True)
cmap = df2.scores_to_cmap(scores, colors)
df2.figure(fnum=FIGNUM, doclf=True, title=title)
# Show score matrix
df2.imshow(score_img, fnum=FIGNUM, cmap=cmap)
# Colorbar
df2.colorbar(scores, colors)
df2.set_xlabel('database')
df2.set_ylabel('queries')
def prepare_page(self, pagenum):
""" Gets indexes for the pagenum ready to be displayed """
# Set the start index
self.start_index = pagenum * self.nPerPage
# Clip based on nCands
self.nDisplay = min(self.nCands - self.start_index, self.nPerPage)
nRows, nCols = ph.get_square_row_cols(self.nDisplay)
# Create a grid to hold nPerPage
self.pnum_ = df2.get_pnum_func(nRows, nCols)
# Adjust stop index
self.stop_index = self.start_index + self.nDisplay
# Clear current figure
self.clean_scope()
self.fig = df2.figure(fnum=self.fnum, pnum=self.pnum_(0), doclf=True, docla=True)
ih.disconnect_callback(self.fig, 'button_press_event')
ih.connect_callback(self.fig, 'button_press_event', self.on_figure_clicked)
def plot_annotationmatch(self, index, draw=True, make_buttons=True):
self.select_candidate_match(index)
# Get index relative to the page
px = index - self.start_index
pnum = self.pnum_(px)
# Setup figure
fnum = self.fnum
fig = df2.figure(fnum=fnum, pnum=pnum, docla=True, doclf=False)
fig
#self.ax = ax = df2.gca()
# Get viz params
qres = self.current_qres
aid1, aid2 = self.current_match_aids
ibs = self.ibs
kwargs = self.interactkw
# Vizualize
ax = viz_matches.show_matches(ibs,
qres,
aid2,
self_fm=[],
fnum=fnum,
pnum=pnum,
**kwargs)[0]
divider = df2.ensure_divider(ax)
name1, name2 = ibs.get_annot_names([aid1, aid2])
#truth = self.ibs.get_match_truth(aid1, aid2)
if make_buttons:
butkw = {
'divider': divider,
'callback': self.match_reviewed,
'index': index,
}
if name1 == name2 and not name1.startswith('____'):
self.append_button(BREAK_MATCH_PREF, **butkw)
else:
if not name1.startswith('____'):
self.append_button(RENAME2_PREF + name1, **butkw)
if not name2.startswith('____'):
self.append_button(RENAME1_PREF + name2, **butkw)
if name1.startswith('____') and name2.startswith('____'):
self.append_button(NEW_MATCH_PREF, **butkw)
if draw:
vh.draw()
def plot_annotationmatch(self, index, draw=True, make_buttons=True):
printDBG('[ishow_qres] starting interaction')
self.select_candidate_match(index)
# Get index relative to the page
px = index - self.start_index
pnum = self.pnum_(px)
#fnum = df2.kwargs_fnum(kwargs)
#printDBG('[inter] starting %s interaction' % type_)
# Setup figure
fnum = self.fnum
printDBG('\n<<<< BEGIN %s INTERACTION >>>>' % (str('qres').upper()))
fig = df2.figure(fnum=fnum, pnum=pnum, docla=True, doclf=False)
printDBG(fig)
#self.ax = ax = df2.gca()
# Get viz params
qres = self.current_qres
aid1, aid2 = self.current_match_aids
ibs = self.ibs
kwargs = self.interactkw
# Vizualize
ax = viz_matches.show_matches(ibs, qres, aid2, self_fm=[], fnum=fnum,
pnum=pnum, **kwargs)[0]
divider = df2.ensure_divider(ax)
name1, name2 = ibs.get_annot_names([aid1, aid2])
#truth = self.ibs.get_match_truth(aid1, aid2)
if make_buttons:
butkw = {
'divider': divider,
'callback': self.match_reviewed,
'index': index,
}
if name1 == name2 and not name1.startswith('____'):
self.append_button(BREAK_MATCH_PREF, **butkw)
else:
if not name1.startswith('____'):
self.append_button(RENAME2_PREF + name1, **butkw)
if not name2.startswith('____'):
self.append_button(RENAME1_PREF + name2, **butkw)
if name1.startswith('____') and name2.startswith('____'):
self.append_button(NEW_MATCH_PREF, **butkw)
if draw:
vh.draw()
def prepare_page(self, pagenum):
""" Gets indexes for the pagenum ready to be displayed """
# Set the start index
self.start_index = pagenum * self.nPerPage
# Clip based on nCands
self.nDisplay = min(self.nCands - self.start_index, self.nPerPage)
nRows, nCols = ph.get_square_row_cols(self.nDisplay)
# Create a grid to hold nPerPage
self.pnum_ = df2.get_pnum_func(nRows, nCols)
# Adjust stop index
self.stop_index = self.start_index + self.nDisplay
# Clear current figure
self.clean_scope()
self.fig = df2.figure(fnum=self.fnum,
pnum=self.pnum_(0),
doclf=True,
docla=True)
ih.disconnect_callback(self.fig, 'button_press_event')
ih.connect_callback(self.fig, 'button_press_event',
self.on_figure_clicked)
def test_viz_image(img_fpath):
# Read image
img = cv2.imread(img_fpath)
tau = np.pi * 2 # References: tauday.com
# Create figure
fig = df2.figure(fnum=42, pnum=(1, 1, 1))
# Clear figure
fig.clf()
# Build parameters
bbox_list = [dummy_bbox(img), dummy_bbox(img, (-.25, -.25), .1)]
showkw = {
'title': 'test axis title',
# The list of bounding boxes to be drawn on the image
'bbox_list': bbox_list,
'theta_list': [tau * .7, tau * .9],
'sel_list': [True, False],
'label_list': ['test label', 'lbl2'],
}
# Print the keyword arguments to illustrate their format
print('showkw = ' + utool.dict_str(showkw))
# Display the image in figure-num 42, using a 1x1 axis grid in the first
# axis. Pass showkw as keyword arguments.
viz_image2.show_image(img, fnum=42, pnum=(1, 1, 1), **showkw)
df2.set_figtitle('Test figure title')
def test_viz_image(img_fpath):
# Read image
img = cv2.imread(img_fpath)
tau = np.pi * 2 # References: tauday.com
# Create figure
fig = df2.figure(fnum=42, pnum=(1, 1, 1))
# Clear figure
fig.clf()
# Build parameters
bbox_list = [dummy_bbox(img), dummy_bbox(img, (-0.25, -0.25), 0.1)]
showkw = {
"title": "test axis title",
# The list of bounding boxes to be drawn on the image
"bbox_list": bbox_list,
"theta_list": [tau * 0.7, tau * 0.9],
"sel_list": [True, False],
"label_list": ["test label", "lbl2"],
}
# Print the keyword arguments to illustrate their format
print("showkw = " + utool.dict_str(showkw))
# Display the image in figure-num 42, using a 1x1 axis grid in the first
# axis. Pass showkw as keyword arguments.
viz_image2.show_image(img, fnum=42, pnum=(1, 1, 1), **showkw)
df2.set_figtitle("Test figure title")
def show_multiple_chips(ibs,
aid_list,
in_image=True,
fnum=0,
sel_aids=[],
subtitle='',
annote=False,
**kwargs):
"""
CommandLine:
python -m ibeis.viz.viz_name --test-show_multiple_chips --show --no-inimage
python -m ibeis.viz.viz_name --test-show_multiple_chips --show --db NNP_Master3 --aids=6435,9861,137,6563,9167,12547,9332,12598,13285 --no-inimage --notitle
python -m ibeis.viz.viz_name --test-show_multiple_chips --show --db NNP_Master3 --aids=137,6563,12547,9332,12598,13285 --no-inimage --notitle --adjust=.05
python -m ibeis.viz.viz_name --test-show_multiple_chips --show --db NNP_Master3 --aids=6563,9332,13285,12598 --no-inimage --notitle --adjust=.05 --rc=1,4
python -m ibeis.viz.viz_name --test-show_multiple_chips --show --db PZ_Master0 --aids=1288 --no-inimage --notitle --adjust=.05
python -m ibeis.viz.viz_name --test-show_multiple_chips --show --db PZ_Master0 --aids=4020,4839 --no-inimage --notitle --adjust=.05
python -m ibeis.viz.viz_name --test-show_multiple_chips --db NNP_Master3 --aids=6524,6540,6571,6751 --no-inimage --notitle --adjust=.05 --diskshow
python -m ibeis.viz.viz_name --test-show_multiple_chips --db PZ_MTEST -a default:index=0:4 --show
--aids=1 --doboth --show --no-inimage
python -m ibeis.viz.viz_name --test-show_multiple_chips --db PZ_MTEST --aids=1 --doboth --show --no-inimage
python -m ibeis.viz.viz_name --test-show_multiple_chips --db PZ_MTEST --aids=1 --doboth --rc=2,1 --show --no-inimage
python -m ibeis.viz.viz_name --test-show_multiple_chips --db PZ_MTEST --aids=1 --doboth --rc=2,1 --show --notitle --trydrawline --no-draw_lbls
python -m ibeis.viz.viz_name --test-show_multiple_chips --db PZ_MTEST --aids=1,2 --doboth --show --notitle --trydrawline
python -m ibeis.viz.viz_name --test-show_multiple_chips --db PZ_MTEST --aids=1,2,3,4,5 --doboth --rc=2,5 --show --chrlbl --trydrawline --qualtitle --no-figtitle --notitle
--doboth
--doboth --show
python -m ibeis.viz.viz_name --test-show_multiple_chips --db NNP_Master3 --aids=15419 --doboth --rc=2,1 --show --notitle --trydrawline --no-draw_lbls
Example:
>>> # DISABLE_DOCTEST
>>> from ibeis.viz.viz_name import * # NOQA
>>> import ibeis
>>> ibs, aid_list, in_image = testdata_multichips()
>>> if True:
>>> import matplotlib as mpl
>>> from ibeis.scripts.thesis import TMP_RC
>>> mpl.rcParams.update(TMP_RC)
>>> fnum = 0
>>> sel_aids = []
>>> subtitle = ''
>>> annote = False
>>> fig = show_multiple_chips(ibs, aid_list, in_image, fnum, sel_aids, subtitle, annote)
>>> ut.quit_if_noshow()
>>> fig.canvas.draw()
>>> ut.show_if_requested()
"""
fnum = pt.ensure_fnum(fnum)
nAids = len(aid_list)
if nAids == 0:
fig = df2.figure(fnum=fnum, pnum=(1, 1, 1), **kwargs)
df2.imshow_null(fnum=fnum, **kwargs)
return fig
# Trigger computation of all chips in parallel
ibsfuncs.ensure_annotation_data(ibs,
aid_list,
chips=(not in_image or annote),
feats=annote)
print('[viz_name] * annot_vuuid=%r' %
((ibs.get_annot_visual_uuids(aid_list), )))
print('[viz_name] * aid_list=%r' % ((aid_list, )))
DOBOTH = ut.get_argflag('--doboth')
rc = ut.get_argval('--rc', type_=list, default=None)
if rc is None:
nRows, nCols = ph.get_square_row_cols(nAids * (2 if DOBOTH else 1))
else:
nRows, nCols = rc
notitle = ut.get_argflag('--notitle')
draw_lbls = not ut.get_argflag('--no-draw_lbls')
show_chip_kw = dict(annote=annote,
in_image=in_image,
notitle=notitle,
draw_lbls=draw_lbls)
#print('[viz_name] * r=%r, c=%r' % (nRows, nCols))
#gs2 = gridspec.GridSpec(nRows, nCols)
pnum_ = df2.get_pnum_func(nRows, nCols)
fig = df2.figure(fnum=fnum, pnum=pnum_(0), **kwargs)
fig.clf()
ax_list1 = []
for px, aid in enumerate(aid_list):
print('px = %r' % (px, ))
_fig, _ax1 = viz_chip.show_chip(ibs,
aid=aid,
pnum=pnum_(px),
**show_chip_kw)
print('other_aids = %r' % (ibs.get_annot_contact_aids(aid), ))
ax = df2.gca()
ax_list1.append(_ax1)
if aid in sel_aids:
df2.draw_border(ax, df2.GREEN, 4)
if ut.get_argflag('--chrlbl') and not DOBOTH:
ax.set_xlabel('(' + chr(ord('a') - 1 + px) + ')')
elif ut.get_argflag('--numlbl') and not DOBOTH:
ax.set_xlabel('(' + str(px + 1) + ')')
#plot_aid3(ibs, aid)
# HACK to show in image and not in image
if DOBOTH:
#ut.embed()
#ph.get_plotdat_dict(ax_list1[1])
#ph.get_plotdat_dict(ax_list2[1])
ax_list2 = []
show_chip_kw['in_image'] = not show_chip_kw['in_image']
start = px + 1
for px, aid in enumerate(aid_list, start=start):
_fig, _ax2 = viz_chip.show_chip(ibs,
aid=aid,
pnum=pnum_(px),
**show_chip_kw)
ax = df2.gca()
ax_list2.append(_ax2)
if ut.get_argflag('--chrlbl'):
ax.set_xlabel('(' + chr(ord('a') - start + px) + ')')
elif ut.get_argflag('--numlbl'):
ax.set_xlabel('(' + str(px - start + 1) + ')')
if ut.get_argflag('--qualtitle'):
qualtext = ibs.get_annot_quality_texts(aid)
ax.set_title(qualtext)
if aid in sel_aids:
df2.draw_border(ax, df2.GREEN, 4)
if in_image:
ax_list1, ax_list2 = ax_list2, ax_list1
if ut.get_argflag('--trydrawline'):
# Unfinished
#ut.embed()
# Draw lines between corresponding axes
# References:
# http://stackoverflow.com/questions/17543359/drawing-lines-between-two-plots-in-matplotlib
import matplotlib as mpl
import vtool as vt
# !!!
#http://matplotlib.org/users/transforms_tutorial.html
#invTransFigure_fn1 = fig.transFigure.inverted().transform
#invTransFigure_fn2 = fig.transFigure.inverted().transform
#print(ax_list1)
#print(ax_list2)
assert len(ax_list1) == len(ax_list2)
for ax1, ax2 in zip(ax_list1, ax_list2):
#_ = ax1.get_window_extent().transformed(fig.dpi_scale_trans.inverted())
#bbox1 = (0, 0, _.width * fig.dpi, _.height * fig.dpi)
# returns in figure coordinates
#bbox1 = df2.get_axis_bbox(ax=ax1)
#if bbox1[-1] < 0:
# # Weird bug
# bbox1 = bbox1[1]
print('--')
print('ax1 = %r' % (ax1, ))
print('ax2 = %r' % (ax2, ))
chipshape = ph.get_plotdat(ax1, 'chipshape')
#_bbox1 = ax1.get_window_extent().transformed(fig.dpi_scale_trans.inverted())
#bbox1 = (0, 0, _bbox1.width * fig.dpi, _bbox1.height * fig.dpi)
bbox1 = (0, 0, chipshape[1], chipshape[0])
aid_ = ph.get_plotdat(ax2, 'aid')
aid_list_ = ph.get_plotdat(ax2, 'aid_list')
index = aid_list_.index(aid_)
annotation_bbox_list = ph.get_plotdat(ax2,
'annotation_bbox_list')
bbox2 = annotation_bbox_list[index]
print('bbox1 = %r' % (bbox1, ))
print('bbox2 = %r' % (bbox2, ))
vert_list1 = np.array(vt.verts_from_bbox(bbox1))
vert_list2 = np.array(vt.verts_from_bbox(bbox2))
print('vert_list1 = %r' % (vert_list1, ))
print('vert_list2 = %r' % (vert_list2, ))
#for vx in [0, 1, 2, 3]:
for vx in [0, 1]:
vert1 = vert_list1[vx].tolist()
vert2 = vert_list2[vx].tolist()
print(' ***')
print(' * vert1 = %r' % (vert1, ))
print(' * vert2 = %r' % (vert2, ))
coordsA = coordsB = 'data'
#coords = 'axes points'
#'axes fraction'
#'axes pixels'
#coordsA = 'axes pixels'
#coordsB = 'data'
#'figure fraction'
#'figure pixels'
#'figure pixels'
#'figure points'
#'polar'
#'offset points'
con = mpl.patches.ConnectionPatch(xyA=vert1,
xyB=vert2,
coordsA=coordsA,
coordsB=coordsB,
axesA=ax1,
axesB=ax2,
linewidth=1,
color='k')
#, arrowstyle="-")
#ut.embed()
#con.set_zorder(None)
ax1.add_artist(con)
#ax2.add_artist(con)
#ut.embed()
#verts2.T[1] -= bbox2[-1]
#bottom_left1, bottom_right1 = verts1[1:3].tolist()
#bottom_left2, bottom_right2 = verts2[1:3].tolist()
##transAxes1 = ax1.transData.inverted()
#transAxes1_fn = ax1.transData.transform
#transAxes2_fn = ax2.transData.transform
#transAxes1_fn = ut.identity
#transAxes2_fn = ut.identity
#coord_bl1 = transFigure.transform(transAxes1.transform(bottom_left1))
#coord_br1 = transFigure.transform(transAxes1.transform(bottom_right1))
#coord_bl1 = invTransFigure_fn1(transAxes1_fn(bottom_left1))
#print('bottom_left2 = %r' % (bottom_left2,))
#coord_bl1 = (5, 5)
#coord_bl2 = invTransFigure_fn2(transAxes2_fn(bottom_left2))
#print('coord_bl2 = %r' % (coord_bl2,))
#coord_br1 = invTransFigure_fn1(transAxes1_fn(bottom_right1))
#coord_br2 = invTransFigure_fn2(transAxes2_fn(bottom_right2))
##print('coord_bl1 = %r' % (coord_bl1,))
#line_coords1 = np.vstack([coord_bl1, coord_bl2])
#line_coords2 = np.vstack([coord_br1, coord_br2])
#print('line_coords1 = %r' % (line_coords1,))
#line1 = mpl.lines.Line2D((line_coords1[0]), (line_coords1[1]), transform=fig.transFigure)
#line2 = mpl.lines.Line2D((line_coords2[0]), (line_coords2[1]), transform=fig.transFigure)
#xs1, ys1 = line_coords1.T
#xs2, ys2 = line_coords2.T
#linekw = dict(transform=fig.transFigure)
#linekw = dict()
#print('xs1 = %r' % (xs1,))
#print('ys1 = %r' % (ys1,))
#line1 = mpl.lines.Line2D(xs1, ys1, **linekw)
#line2 = mpl.lines.Line2D(xs2, ys2, **linekw) # NOQA
#shrinkA=5, shrinkB=5, mutation_scale=20, fc="w")
#ax2.add_artist(con)
#fig.lines.append(line1)
#fig.lines.append(line2)
pass
return fig
def dump_feature_pair_analysis(allres):
print('[rr2] Doing: feature pair analysis')
# TODO: Measure score consistency over a spatial area.
# Measures entropy of matching vs nonmatching descriptors
# Measures scale of m vs nm desc
ibs = allres.ibs
qrid2_qres = allres.qrid2_qres
def _hist_prob_x(desc, bw_factor):
# Choose number of bins based on the bandwidth
bin_range = (0, 256) # assuming input is uint8
bins = bin_range[1] // bw_factor
bw_factor = bin_range[1] / bins
# Compute the probabilty mass function, each w.r.t a single descriptor
hist_params = dict(bins=bins, range=bin_range, density=True)
hist_func = np.histogram
desc_pmf = [hist_func(d, **hist_params)[0] for d in desc]
# Compute the probability that you saw what you saw
# TODO: could use linear interpolation for a bit more robustness here
bin_vals = [
np.array(np.floor(d / bw_factor), dtype=np.uint8) for d in desc
]
hist_prob_x = [pmf[vals] for pmf, vals in zip(desc_pmf, bin_vals)]
return hist_prob_x
def _gkde_prob_x(desc, bw_factor):
# Estimate the probabilty density function, each w.r.t a single descriptor
gkde_func = scipy.stats.gaussian_kde
desc_pdf = [gkde_func(d, bw_factor) for d in desc]
gkde_prob_x = [pdf(d) for pdf, d in zip(desc_pdf, desc)]
return gkde_prob_x
def descriptor_entropy(desc, bw_factor=4):
'computes the shannon entropy of each descriptor in desc'
# Compute shannon entropy = -sum(p(x)*log(p(x)))
prob_x = _hist_prob_x(desc, bw_factor)
entropy = [-(px * np.log2(px)).sum() for px in prob_x]
return entropy
# Load features if we need to
if ibs.feats.cx2_desc.size == 0:
print(' * forcing load of descriptors')
ibs.load_features()
cx2_desc = ibs.feats.cx2_desc
cx2_kpts = ibs.feats.cx2_kpts
def measure_feat_pairs(allres, orgtype='top_true'):
print('Measure ' + orgtype + ' pairs')
orgres = allres.__dict__[orgtype]
entropy_list = []
scale_list = []
score_list = []
lbl = 'Measuring ' + orgtype + ' pair '
fmt_str = utool.make_progress_fmt_str(len(orgres), lbl)
rank_skips = []
gt_skips = []
for ix, (qrid, rid, score, rank) in enumerate(orgres.iter()):
utool.print_(fmt_str % (ix + 1, ))
# Skip low ranks
if rank > 5:
rank_skips.append(qrid)
continue
other_rids = ibs.get_other_indexed_rids(qrid)
# Skip no groundtruth
if len(other_rids) == 0:
gt_skips.append(qrid)
continue
qres = qrid2_qres[qrid]
# Get matching feature indexes
fm = qres.cx2_fm[rid]
# Get their scores
fs = qres.cx2_fs[rid]
# Get matching descriptors
printDBG('\nfm.shape=%r' % (fm.shape, ))
desc1 = cx2_desc[qrid][fm[:, 0]]
desc2 = cx2_desc[rid][fm[:, 1]]
# Get matching keypoints
kpts1 = cx2_kpts[qrid][fm[:, 0]]
kpts2 = cx2_kpts[rid][fm[:, 1]]
# Get their scale
scale1_m = ktool.get_scales(kpts1)
scale2_m = ktool.get_scales(kpts2)
# Get their entropy
entropy1 = descriptor_entropy(desc1, bw_factor=1)
entropy2 = descriptor_entropy(desc2, bw_factor=1)
# Append to results
entropy_tup = np.array(zip(entropy1, entropy2))
scale_tup = np.array(zip(scale1_m, scale2_m))
entropy_tup = entropy_tup.reshape(len(entropy_tup), 2)
scale_tup = scale_tup.reshape(len(scale_tup), 2)
entropy_list.append(entropy_tup)
scale_list.append(scale_tup)
score_list.append(fs)
print('Skipped %d total.' % (len(rank_skips) + len(gt_skips), ))
print('Skipped %d for rank > 5, %d for no gt' % (
len(rank_skips),
len(gt_skips),
))
print(np.unique(map(len, entropy_list)))
def evstack(tup):
return np.vstack(tup) if len(tup) > 0 else np.empty((0, 2))
def ehstack(tup):
return np.hstack(tup) if len(tup) > 0 else np.empty((0, 2))
entropy_pairs = evstack(entropy_list)
scale_pairs = evstack(scale_list)
scores = ehstack(score_list)
print('\n * Measured %d pairs' % len(entropy_pairs))
return entropy_pairs, scale_pairs, scores
tt_entropy, tt_scale, tt_scores = measure_feat_pairs(allres, 'top_true')
tf_entropy, tf_scale, tf_scores = measure_feat_pairs(allres, 'top_false')
# Measure ratios
def measure_ratio(arr):
return arr[:, 0] / arr[:, 1] if len(arr) > 0 else np.array([])
tt_entropy_ratio = measure_ratio(tt_entropy)
tf_entropy_ratio = measure_ratio(tf_entropy)
tt_scale_ratio = measure_ratio(tt_scale)
tf_scale_ratio = measure_ratio(tf_scale)
title_suffix = allres.title_suffix
# Entropy vs Score
df2.figure(fnum=1, docla=True)
df2.figure(fnum=1, plotnum=(2, 2, 1))
df2.plot2(tt_entropy[:, 0], tt_scores, 'gx', 'entropy1', 'score',
'Top True')
df2.figure(fnum=1, plotnum=(2, 2, 2))
df2.plot2(tf_entropy[:, 0], tf_scores, 'rx', 'entropy1', 'score',
'Top False')
df2.figure(fnum=1, plotnum=(2, 2, 3))
df2.plot2(tt_entropy[:, 1], tt_scores, 'gx', 'entropy2', 'score',
'Top True')
df2.figure(fnum=1, plotnum=(2, 2, 4))
df2.plot2(tf_entropy[:, 1], tf_scores, 'rx', 'entropy2', 'score',
'Top False')
df2.set_figtitle('Entropy vs Score -- ' + title_suffix)
viz.__dump_or_browse(allres, 'pair_analysis')
# Scale vs Score
df2.figure(fnum=2, plotnum=(2, 2, 1), docla=True)
df2.plot2(tt_scale[:, 0], tt_scores, 'gx', 'scale1', 'score', 'Top True')
df2.figure(fnum=2, plotnum=(2, 2, 2))
df2.plot2(tf_scale[:, 0], tf_scores, 'rx', 'scale1', 'score', 'Top False')
df2.figure(fnum=2, plotnum=(2, 2, 3))
df2.plot2(tt_scale[:, 1], tt_scores, 'gx', 'scale2', 'score', 'Top True')
df2.figure(fnum=2, plotnum=(2, 2, 4))
df2.plot2(tf_scale[:, 1], tf_scores, 'rx', 'scale2', 'score', 'Top False')
df2.set_figtitle('Scale vs Score -- ' + title_suffix)
viz.__dump_or_browse(allres, 'pair_analysis')
# Entropy Ratio vs Score
df2.figure(fnum=3, plotnum=(1, 2, 1), docla=True)
df2.plot2(tt_entropy_ratio, tt_scores, 'gx', 'entropy-ratio', 'score',
'Top True')
df2.figure(fnum=3, plotnum=(1, 2, 2))
df2.plot2(tf_entropy_ratio, tf_scores, 'rx', 'entropy-ratio', 'score',
'Top False')
df2.set_figtitle('Entropy Ratio vs Score -- ' + title_suffix)
viz.__dump_or_browse(allres, 'pair_analysis')
# Scale Ratio vs Score
df2.figure(fnum=4, plotnum=(1, 2, 1), docla=True)
df2.plot2(tt_scale_ratio, tt_scores, 'gx', 'scale-ratio', 'score',
'Top True')
df2.figure(fnum=4, plotnum=(1, 2, 2))
df2.plot2(tf_scale_ratio, tf_scores, 'rx', 'scale-ratio', 'score',
'Top False')
df2.set_figtitle('Entropy Ratio vs Score -- ' + title_suffix)
viz.__dump_or_browse(allres, 'pair_analysis')
def _start_interaction(self):
#self.fig = df2.figure(fnum=self.fnum, doclf=True, docla=True)
self.fig = df2.figure(fnum=self.fnum, doclf=True)
ih.connect_callback(self.fig, 'close_event', self.on_close)
register_interaction(self)
self.is_running = True
def select_ith_match(self, mx):
"""
Selects the ith match and visualizes and prints information concerning
features weights, keypoint details, and sift descriptions
Args:
mx (int) - the ith match to visualize
qaid (int) - query annotation id
aid (int) - database annotation id
CommandLine:
python -m ibeis.viz.interact.interact_matches --test-select_ith_match --show
Example:
>>> # DISABLE_DOCTEST
>>> from ibeis.viz.interact.interact_matches import * # NOQA
>>> self = testdata_match_interact(mx=1)
>>> pt.show_if_requested()
"""
ibs = self.ibs
qaid = self.qaid
aid = self.daid
fnum = self.fnum
figtitle = self.figtitle
rchip1 = self.rchip1
rchip2 = self.rchip2
aid = self.daid
same_fig = self.same_fig
self.mx = mx
print('+--- SELECT --- ')
print('qaid=%r, daid=%r' % (qaid, aid))
print('... selecting mx-th=%r feature match' % mx)
if False:
print('score stats:')
print(ut.get_stats_str(self.fsv, axis=0, newlines=True))
print('fsv[mx] = %r' % (self.fsv[mx], ))
print('fs[mx] = %r' % (self.fs[mx], ))
"""
# test feature weights of actual chips
fx1, fx2 = fm[mx]
daid = aid
ibs.get_annot_fgweights([daid])[0][fx2]
ibs.get_annot_fgweights([qaid])[0][fx1]
"""
#----------------------
# Get info for the select_ith_match plot
self.mode = 1
# Get the mx-th feature match
fx1, fx2 = self.fm[mx]
fscore2 = self.fs[mx]
fk2 = self.fk[mx]
kpts1 = ibs.get_annot_kpts([self.qaid],
config2_=self.query_config2_)[0]
kpts2 = ibs.get_annot_kpts([self.daid], config2_=self.data_config2_)[0]
desc1 = ibs.get_annot_vecs([self.qaid],
config2_=self.query_config2_)[0]
desc2 = ibs.get_annot_vecs([self.daid], config2_=self.data_config2_)[0]
kp1, kp2 = kpts1[fx1], kpts2[fx2]
sift1, sift2 = desc1[fx1], desc2[fx2]
info1 = '\nquery'
info2 = '\nk=%r fscore=%r' % (fk2, fscore2)
#last_state.last_fx = fx1
self.last_fx = fx1
# Extracted keypoints to draw
extracted_list = [(rchip1, kp1, sift1, fx1, self.qaid, info1),
(rchip2, kp2, sift2, fx2, self.daid, info2)]
# Normalizng Keypoint
#if hasattr(cm, 'filt2_meta') and 'lnbnn' in cm.filt2_meta:
# qfx2_norm = cm.filt2_meta['lnbnn']
# # Normalizing chip and feature
# (aid3, fx3, normk) = qfx2_norm[fx1]
# rchip3 = ibs.get_annot_chips(aid3)
# kp3 = ibs.get_annot_kpts(aid3)[fx3]
# sift3 = ibs.get_annot_vecs(aid3)[fx3]
# info3 = '\nnorm %s k=%r' % (vh.get_aidstrs(aid3), normk)
# extracted_list.append((rchip3, kp3, sift3, fx3, aid3, info3))
#else:
# pass
# print('WARNING: meta doesnt exist')
#----------------------
# Draw the select_ith_match plot
nRows, nCols = len(extracted_list) + same_fig, 3
# Draw matching chips and features
sel_fm = np.array([(fx1, fx2)])
pnum1 = (nRows, 1, 1) if same_fig else (1, 1, 1)
vert = self.vert if self.vert is not None else False
self.chipmatch_view(pnum1,
ell_alpha=.4,
ell_linewidth=1.8,
colors=df2.BLUE,
sel_fm=sel_fm,
vert=vert)
# Draw selected feature matches
px = nCols * same_fig # plot offset
prevsift = None
if not same_fig:
#fnum2 = fnum + len(viz.FNUMS)
fnum2 = self.fnum2
fig2 = df2.figure(fnum=fnum2, docla=True, doclf=True)
else:
fnum2 = fnum
for (rchip, kp, sift, fx, aid, info) in extracted_list:
px = viz_featrow.draw_feat_row(rchip,
fx,
kp,
sift,
fnum2,
nRows,
nCols,
px,
prevsift=prevsift,
aid=aid,
info=info)
prevsift = sift
if not same_fig:
ih.connect_callback(fig2, 'button_press_event', self.on_click)
df2.set_figtitle(figtitle + vh.get_vsstr(qaid, aid))
def plot_scores(hs, qcx_list, fnum=1):
print('[dev] plot_scores(fnum=%r)' % fnum)
topN_gt = 1
topN_ranks = 3
qcx2_res = get_qcx2_res(hs, qcx_list)
data_scores = [] # matching scores
data_qpairs = [] # query info (qcx, cx)
data_gtranks = [] # query info (gtrank)
# Append all scores to a giant list
for res in qcx2_res.itervalues():
# Get gt scores first
qcx = res.qcx
top_cxs = np.array(res.topN_cxs(hs, N=topN_ranks, only_gt=False))
gt_cxs = np.array(res.topN_cxs(hs, N=topN_gt, only_gt=True))
top_scores = res.cx2_score[top_cxs]
np.intersect1d(top_cxs, gt_cxs)
# list of ranks if score is ground truth otherwise -1
isgt_ranks = [tx if cx in set(gt_cxs) else -1 for (tx, cx) in enumerate(top_cxs)]
qcx_pairs = [(hs.cx2_cid(qcx), hs.cx2_cid(cx)) for cx in top_cxs]
# Append all scores
data_scores.extend(top_scores.tolist())
data_qpairs.extend(qcx_pairs)
data_gtranks.extend(isgt_ranks)
data_scores = np.array(data_scores)
data_qpairs = np.array(data_qpairs)
data_gtranks = np.array(data_gtranks)
data_sortx = data_scores.argsort()
sorted_scores = data_scores[data_sortx]
# Draw and info
rank_colorbounds = [
((-1, 0), df2.GRAY),
((0, 1), df2.TRUE_GREEN),
((1, 5), df2.UNKNOWN_PURP),
((5, None), df2.FALSE_RED),
]
print('[dev] matching chipscore stats: ' + utool.stats_str(data_scores))
df2.figure(fnum=fnum, doclf=True, docla=True)
# Finds the knee
df2.plot(sorted_scores, color=df2.ORANGE, label='all scores')
# Plot results with ranks within (low, high) bounds
colorbounds_iter = reversed(list(enumerate(rank_colorbounds)))
for count, ((low, high), rankX_color) in colorbounds_iter:
datarank_flag = utool.inbounds(data_gtranks, low, high)
rankX_xs = np.where(datarank_flag[data_sortx])[0]
rankX_ys = sorted_scores[rankX_xs]
if high is None:
rankX_label = '%d <= gt rank' % low
else:
rankX_label = '%d <= gt rank < %d' % (low, high)
if len(rankX_ys) > 0:
df2.plot(rankX_xs, rankX_ys, 'o', color=rankX_color, label=rankX_label, alpha=.5)
rowid = qcx2_res.itervalues().next().rowid
df2.set_logyscale_from_data(data_scores)
df2.set_xlabel('chipmatch index')
df2.dark_background()
df2.set_figtitle('matching scores\n' + rowid)
df2.legend(loc='upper left')
df2.iup()
fnum += 1
score_table = np.vstack((data_scores, data_gtranks, data_qpairs.T)).T
score_table = score_table[data_sortx[::-1]]
column_labels = ['score', 'gtrank', 'qcid', 'cid']
header = 'score_table\nuid=%r' % rowid
column_type = [float, int, int, int]
csv_txt = utool.util_csv.numpy_to_csv(score_table, column_labels, header, column_type)
print(csv_txt)
#utool.embed()
return fnum
def show_sv(chip1,
chip2,
kpts1,
kpts2,
fm,
homog_tup=None,
aff_tup=None,
mx=None,
show_assign=True,
show_lines=True,
show_kpts=True,
show_aff=None,
fnum=1,
refine_method=None,
**kwargs):
""" Visualizes spatial verification
CommandLine:
python -m vtool.spatial_verification --test-spatially_verify_kpts --show
"""
#import plottool as pt
# GEt Matching chips
kpts1_m = kpts1[fm.T[0]]
kpts2_m = kpts2[fm.T[1]]
wh2 = vt.get_size(chip2)
#
# Get Affine Chips, Keypoints, Inliers
if show_aff is None:
show_aff_ = aff_tup is not None
else:
show_aff_ = show_aff
if show_aff_:
(aff_inliers, Aff) = aff_tup
chip1_At = vt.warpAffine(chip1, Aff, wh2)
#kpts1_mAt = ktool.transform_kpts(kpts1_m, Aff)
chip2_blendA = vt.blend_images(chip1_At, chip2)
#
# Get Homog Chips, Keypoints, Inliers
show_homog = homog_tup is not None
if show_homog:
(hom_inliers, H) = homog_tup
#kpts1_mHt = ktool.transform_kpts(kpts1_m, H)
chip1_Ht = vt.warpHomog(chip1, H, wh2)
chip2_blendH = vt.blend_images(chip1_Ht, chip2)
#
# Drawing settings
nRows = (show_assign) + (show_aff_) + (show_homog)
nCols1 = (show_assign) + (show_aff_) + (show_homog)
nCols2 = 2
pnum1_ = df2.get_pnum_func(nRows, nCols1)
pnum2_ = df2.get_pnum_func(nRows, nCols2)
#in_kwargs = dict(rect=True, ell_alpha=.7, eig=False, ori=True, pts=True)
#out_kwargs = dict(rect=False, ell_alpha=.3, eig=False)
in_kwargs = dict(rect=False, ell_alpha=.7, eig=False, ori=False, pts=False)
out_kwargs = dict(rect=False, ell_alpha=.7, eig=False, ori=False)
def _draw_kpts(*args, **kwargs):
if not show_kpts:
return
df2.draw_kpts2(*args, **kwargs)
def draw_inlier_kpts(kpts_m, inliers, color, H=None):
_draw_kpts(kpts_m[inliers], color=color, H=H, **in_kwargs)
if mx is not None:
_draw_kpts(kpts_m[mx:(mx + 1)],
color=color,
ell_linewidth=3,
H=H,
**in_kwargs)
def _draw_matches(px, title, inliers):
dmkwargs = dict(fs=None,
title=title,
all_kpts=False,
draw_lines=True,
docla=True,
draw_border=True,
fnum=fnum,
pnum=pnum1_(px),
colors=df2.ORANGE)
__fm = np.vstack((inliers, inliers)).T
df2.show_chipmatch2(chip1, chip2, kpts1_m, kpts2_m, __fm, **dmkwargs)
return px + 1
from plottool import color_funcs
colors = df2.distinct_colors(2, brightness=.95)
color1, color2 = colors[0], colors[1]
color1_dark = color_funcs.darken_rgb(color1, .2)
color2_dark = color_funcs.darken_rgb(color2, .2)
def _draw_chip(px, title, chip, inliers, kpts1_m, kpts2_m, H1=None):
if isinstance(px, tuple):
pnum = px
df2.imshow(chip, title=title, fnum=fnum, pnum=pnum)
px = pnum[2]
else:
df2.imshow(chip, title=title, fnum=fnum, pnum=pnum2_(px))
if kpts1_m is not None:
_draw_kpts(kpts1_m, color=color1_dark, H=H1, **out_kwargs)
draw_inlier_kpts(kpts1_m, inliers, color1, H=H1)
if kpts2_m is not None:
_draw_kpts(kpts2_m, color=color2_dark, **out_kwargs)
draw_inlier_kpts(kpts2_m, inliers, color2)
if kpts2_m is not None and kpts1_m is not None and show_lines:
__fm = np.vstack((inliers, inliers)).T
df2.draw_lines2(kpts1_m,
kpts2_m,
__fm,
color_list=[custom_constants.ORANGE],
lw=2,
line_alpha=1,
H1=H1)
return px + 1
#
# Begin the drawing
df2.figure(fnum=fnum, pnum=(nRows, nCols1, 1), docla=True, doclf=True)
px = 0
if show_assign:
# Draw the Assigned -> Affine -> Homography matches
px = _draw_matches(px, '%d Assigned matches ' % len(fm),
np.arange(len(fm)))
if show_aff_:
px = _draw_matches(px, '%d Initial inliers ' % len(aff_inliers),
aff_inliers)
if show_homog:
if refine_method is None:
refine_method = ''
if len(refine_method) > 0:
refine_method_ = '(%s) ' % (refine_method, )
else:
refine_method_ = ''
px = _draw_matches(
px,
'%d Refined %sinliers' % (len(hom_inliers), refine_method_),
hom_inliers)
#
# Draw the Affine Transformations
px = nCols2 * show_assign
#if show_aff_ or show_homog:
if show_aff_:
#px = _draw_chip(px, 'Source', chip1, aff_inliers, kpts1_m, None)
#px = _draw_chip(px, 'Dest', chip2, aff_inliers, None, kpts2_m)
px = _draw_chip(px,
'Initial Warped',
chip1_At,
aff_inliers,
kpts1_m,
None,
H1=Aff)
px = _draw_chip(px,
'Initial Blend',
chip2_blendA,
aff_inliers,
kpts1_m,
kpts2_m,
H1=Aff)
#px = _draw_chip(px, 'Affine', chip1_At, aff_inliers, kpts1_mAt, None)
#px = _draw_chip(px, 'Aff Blend', chip2_blendA, aff_inliers, kpts1_mAt, kpts2_m)
pass
#
# Draw the Homography Transformation
if show_homog:
#px = _draw_chip(px, 'Source', chip1, hom_inliers, kpts1_m, None)
#px = _draw_chip(px, 'Dest', chip2, hom_inliers, None, kpts2_m)
#px = _draw_chip(px, 'Homog', chip1_Ht, hom_inliers, kpts1_mHt, None)
#px = _draw_chip(px, 'Homog Blend', chip2_blendH, hom_inliers, kpts1_mHt, kpts2_m)
px = _draw_chip(px,
'Refined Warped',
chip1_Ht,
hom_inliers,
kpts1_m,
None,
H1=H)
px = _draw_chip(px,
'Refined Blend',
chip2_blendH,
hom_inliers,
kpts1_m,
kpts2_m,
H1=H)
def show_descriptors_match_distances(orgres2_distance, fnum=1, db_name='', **kwargs):
disttype_list = orgres2_distance.itervalues().next().keys()
orgtype_list = orgres2_distance.keys()
(nRow, nCol) = len(orgtype_list), len(disttype_list)
nColors = nRow * nCol
color_list = df2.distinct_colors(nColors)
df2.figure(fnum=fnum, docla=True, doclf=True)
pnum_ = lambda px: (nRow, nCol, px + 1)
plot_type = utool.get_arg('--plot-type', default='plot')
# Remember min and max val for each distance type (l1, emd...)
distkey2_min = {distkey: np.uint64(-1) for distkey in disttype_list}
distkey2_max = {distkey: 0 for distkey in disttype_list}
def _distplot(dists, color, label, distkey, plot_type=plot_type):
data = sorted(dists)
ax = df2.gca()
min_ = distkey2_min[distkey]
max_ = distkey2_max[distkey]
if plot_type == 'plot':
df2.plot(data, color=color, label=label, yscale='linear')
#xticks = np.linspace(np.min(data), np.max(data), 3)
#yticks = np.linspace(0, len(data), 5)
#ax.set_xticks(xticks)
#ax.set_yticks(yticks)
ax.set_ylim(min_, max_)
ax.set_xlim(0, len(dists))
ax.set_ylabel('distance')
ax.set_xlabel('matches indexes (sorted by distance)')
df2.legend(loc='lower right')
if plot_type == 'pdf':
df2.plot_pdf(data, color=color, label=label)
ax.set_ylabel('pr')
ax.set_xlabel('distance')
ax.set_xlim(min_, max_)
df2.legend(loc='upper left')
df2.dark_background(ax)
df2.small_xticks(ax)
df2.small_yticks(ax)
px = 0
for orgkey in orgtype_list:
for distkey in disttype_list:
dists = orgres2_distance[orgkey][distkey]
if len(dists) == 0:
continue
min_ = dists.min()
max_ = dists.max()
distkey2_min[distkey] = min(distkey2_min[distkey], min_)
distkey2_max[distkey] = max(distkey2_max[distkey], max_)
for count, orgkey in enumerate(orgtype_list):
for distkey in disttype_list:
printDBG('[allres-viz] plotting: %r' % ((orgkey, distkey),))
dists = orgres2_distance[orgkey][distkey]
df2.figure(fnum=fnum, pnum=pnum_(px))
color = color_list[px]
title = distkey + ' ' + orgkey
label = 'P(%s | %s)' % (distkey, orgkey)
_distplot(dists, color, label, distkey, **kwargs)
if count == 0:
ax = df2.gca()
ax.set_title(distkey)
px += 1
subtitle = 'the matching distances between sift descriptors'
title = '(sift) matching distances'
if db_name != '':
title = db_name + ' ' + title
df2.set_figtitle(title, subtitle)
df2.adjust_subplots_safe()
def test_ori_extract_main():
"""
CommandLine:
python -m pyhesaff.tests.test_exhaustive_ori_extract --test-test_ori_extract_main
python -m pyhesaff.tests.test_exhaustive_ori_extract --test-test_ori_extract_main --show
Example:
>>> # GUI_DOCTEST
>>> from pyhesaff.tests.test_exhaustive_ori_extract import * # NOQA
>>> test_ori_extract_main()
>>> ut.show_if_requested()
"""
import pyhesaff
from plottool import draw_func2 as df2
from plottool.viz_keypoints import show_keypoints
import vtool # NOQA
import vtool.image as gtool
import vtool.keypoint as ktool
np.set_printoptions(threshold=5000, linewidth=5000, precision=3)
# Read data
print('[rotinvar] loading test data')
img_fpath = ut.grab_test_imgpath('jeff.png')
imgL = gtool.cvt_BGR2L(gtool.imread(img_fpath))
detect_kw0 = {}
detect_kw1 = {'scale_min': 20, 'scale_max': 100}
detect_kw2 = {'scale_min': 40, 'scale_max': 60}
detect_kw3 = {'scale_min': 45, 'scale_max': 49}
# Remove skew and anisotropic scaling
def force_isotropic(kpts):
kpts_ = kpts.copy()
kpts_[:, ktool.SKEW_DIM] = 0
kpts_[:, ktool.SCAX_DIM] = kpts_[:, ktool.SCAY_DIM]
vecs_ = pyhesaff.extract_vecs(img_fpath, kpts_)
return kpts_, vecs_
def force_ori(kpts, ori):
kpts_ = kpts.copy()
kpts_[:, ktool.ORI_DIM] = ori
vecs_ = pyhesaff.extract_vecs(img_fpath, kpts_)
return kpts_, vecs_
def shift_kpts(kpts, x, y):
kpts_ = kpts.copy()
kpts_[:, ktool.XDIM] += x
kpts_[:, ktool.YDIM] += y
vecs_ = pyhesaff.extract_vecs(img_fpath, kpts_)
return kpts_, vecs_
# --- Experiment ---
kpts0, vecs0 = double_detect(img_fpath, **detect_kw0)
kpts1, vecs1 = double_detect(img_fpath, **detect_kw1)
kpts2, vecs2 = double_detect(img_fpath, **detect_kw2)
#
kpts3, vecs3 = double_detect(img_fpath, **detect_kw3)
kpts4, vecs4 = force_isotropic(kpts3)
kpts5, vecs5 = force_ori(kpts3, 1.45)
kpts6, vecs6 = shift_kpts(kpts5, -60, -50)
kpts7, vecs7 = force_ori(kpts6, 0)
kpts8, vecs8 = force_ori(kpts7, 2.40)
kpts9, vecs9 = force_ori(kpts8, 5.40)
kpts10, vecs10 = force_ori(kpts9, 10.40)
# --- Print ---
# ---- Draw ----
nRow, nCol = 1, 2
df2.figure(fnum=2, doclf=True, docla=True)
df2.figure(fnum=1, doclf=True, docla=True)
def show_kpts_(fnum, pnum, kpts, vecs, title):
print('--------')
print('show_kpts: %r.%r' % (fnum, pnum))
print('kpts = %r' % (kpts, ))
print('scales = %r' % ktool.get_scales(kpts))
# FIXME: this exists in ibeis. move to vtool
#dev_consistency.check_vecs(vecs3)
show_keypoints(imgL,
kpts,
sifts=vecs,
pnum=pnum,
rect=True,
ori=True,
fnum=fnum,
title=title,
ell_alpha=1)
show_kpts_(1, (nRow, nCol, 1), kpts3, vecs3, 'kpts3: original')
show_kpts_(1, (nRow, nCol, 2), kpts4, vecs4, 'kpts4: isotropic + redetect')
show_kpts_(2, (2, 3, 1), kpts5, vecs5, 'kpts5: force_ori + redetect')
show_kpts_(2, (2, 3, 2), kpts6, vecs6, 'kpts6: shift')
show_kpts_(2, (2, 3, 3), kpts7, vecs7, 'kpts7: shift + reorient')
show_kpts_(2, (2, 3, 4), kpts8, vecs8, 'kpts8: shift + reorient')
show_kpts_(2, (2, 3, 5), kpts9, vecs9, 'kpts9: reorient')
show_kpts_(2, (2, 3, 6), kpts10, vecs10, 'kpts10: reorient')
def _viz_keypoints(fnum, pnum=(1, 1, 1), **kwargs):
df2.figure(fnum=fnum, docla=True, doclf=True)
show_keypoints(chip, kpts, fnum=fnum, pnum=pnum, **kwargs)
if figtitle is not None:
df2.set_figtitle(figtitle)
def test_ori_extract_main():
"""
CommandLine:
python -m pyhesaff.tests.test_exhaustive_ori_extract --test-test_ori_extract_main
python -m pyhesaff.tests.test_exhaustive_ori_extract --test-test_ori_extract_main --show
Example:
>>> # GUI_DOCTEST
>>> from pyhesaff.tests.test_exhaustive_ori_extract import * # NOQA
>>> test_ori_extract_main()
>>> ut.show_if_requested()
"""
import pyhesaff
from plottool import draw_func2 as df2
from plottool.viz_keypoints import show_keypoints
import vtool # NOQA
import vtool.image as gtool
import vtool.keypoint as ktool
np.set_printoptions(threshold=5000, linewidth=5000, precision=3)
# Read data
print('[rotinvar] loading test data')
img_fpath = ut.grab_test_imgpath('jeff.png')
imgL = gtool.cvt_BGR2L(gtool.imread(img_fpath))
detect_kw0 = {
}
detect_kw1 = {
'scale_min': 20,
'scale_max': 100
}
detect_kw2 = {
'scale_min': 40,
'scale_max': 60
}
detect_kw3 = {
'scale_min': 45,
'scale_max': 49
}
# Remove skew and anisotropic scaling
def force_isotropic(kpts):
kpts_ = kpts.copy()
kpts_[:, ktool.SKEW_DIM] = 0
kpts_[:, ktool.SCAX_DIM] = kpts_[:, ktool.SCAY_DIM]
vecs_ = pyhesaff.extract_vecs(img_fpath, kpts_)
return kpts_, vecs_
def force_ori(kpts, ori):
kpts_ = kpts.copy()
kpts_[:, ktool.ORI_DIM] = ori
vecs_ = pyhesaff.extract_vecs(img_fpath, kpts_)
return kpts_, vecs_
def shift_kpts(kpts, x, y):
kpts_ = kpts.copy()
kpts_[:, ktool.XDIM] += x
kpts_[:, ktool.YDIM] += y
vecs_ = pyhesaff.extract_vecs(img_fpath, kpts_)
return kpts_, vecs_
# --- Experiment ---
kpts0, vecs0 = double_detect(img_fpath, **detect_kw0)
kpts1, vecs1 = double_detect(img_fpath, **detect_kw1)
kpts2, vecs2 = double_detect(img_fpath, **detect_kw2)
#
kpts3, vecs3 = double_detect(img_fpath, **detect_kw3)
kpts4, vecs4 = force_isotropic(kpts3)
kpts5, vecs5 = force_ori(kpts3, 1.45)
kpts6, vecs6 = shift_kpts(kpts5, -60, -50)
kpts7, vecs7 = force_ori(kpts6, 0)
kpts8, vecs8 = force_ori(kpts7, 2.40)
kpts9, vecs9 = force_ori(kpts8, 5.40)
kpts10, vecs10 = force_ori(kpts9, 10.40)
# --- Print ---
# ---- Draw ----
nRow, nCol = 1, 2
df2.figure(fnum=2, doclf=True, docla=True)
df2.figure(fnum=1, doclf=True, docla=True)
def show_kpts_(fnum, pnum, kpts, vecs, title):
print('--------')
print('show_kpts: %r.%r' % (fnum, pnum))
print('kpts = %r' % (kpts,))
print('scales = %r' % ktool.get_scales(kpts))
# FIXME: this exists in ibeis. move to vtool
#dev_consistency.check_vecs(vecs3)
show_keypoints(imgL, kpts, sifts=vecs, pnum=pnum, rect=True,
ori=True, fnum=fnum, title=title, ell_alpha=1)
show_kpts_(1, (nRow, nCol, 1), kpts3, vecs3, 'kpts3: original')
show_kpts_(1, (nRow, nCol, 2), kpts4, vecs4, 'kpts4: isotropic + redetect')
show_kpts_(2, (2, 3, 1), kpts5, vecs5, 'kpts5: force_ori + redetect')
show_kpts_(2, (2, 3, 2), kpts6, vecs6, 'kpts6: shift')
show_kpts_(2, (2, 3, 3), kpts7, vecs7, 'kpts7: shift + reorient')
show_kpts_(2, (2, 3, 4), kpts8, vecs8, 'kpts8: shift + reorient')
show_kpts_(2, (2, 3, 5), kpts9, vecs9, 'kpts9: reorient')
show_kpts_(2, (2, 3, 6), kpts10, vecs10, 'kpts10: reorient')
def plot_scores2(hs, qcx_list, fnum=1):
print('[dev] plot_scores(fnum=%r)' % fnum)
qcx2_res = get_qcx2_res(hs, qcx_list)
all_score_list = []
gtscore_ys = []
gtscore_xs = []
gtscore_ranks = []
EXCLUDE_ZEROS = False
N = 1
# Append all scores to a giant list
for res in qcx2_res.itervalues():
cx2_score = res.cx2_score
# Get gt scores first
#gt_cxs = hs.get_other_indexed_cxs(res.qcx)
gt_cxs = np.array(res.topN_cxs(hs, N=N, only_gt=True))
gt_ys = cx2_score[gt_cxs]
if EXCLUDE_ZEROS:
nonzero_cxs = np.where(cx2_score != 0)[0]
gt_cxs = gt_cxs[gt_ys != 0]
gt_ranks = res.get_gt_ranks(gt_cxs)
gt_cxs = np.array(utool.list_index(nonzero_cxs, gt_cxs))
gt_ys = gt_ys[gt_ys != 0]
score_list = cx2_score[nonzero_cxs].tolist()
else:
score_list = cx2_score.tolist()
gt_ranks = res.get_gt_ranks(gt_cxs)
gtscore_ys.extend(gt_ys)
gtscore_xs.extend(gt_cxs + len(all_score_list))
gtscore_ranks.extend(gt_ranks)
# Append all scores
all_score_list.extend(score_list)
all_score_list = np.array(all_score_list)
gtscore_ranks = np.array(gtscore_ranks)
gtscore_ys = np.array(gtscore_ys)
# Sort all chipmatch scores
allx_sorted = all_score_list.argsort() # mapping from sortedallx to allx
allscores_sorted = all_score_list[allx_sorted]
# Change the groundtruth positions to correspond to sorted cmatch scores
# Find position of gtscore_xs in allx_sorted
gtscore_sortxs = utool.list_index(allx_sorted, gtscore_xs)
gtscore_sortxs = np.array(gtscore_sortxs)
# Draw and info
rank_bounds = [
(0, 1),
(1, 5),
(5, None)
]
rank_colors = [
df2.TRUE_GREEN,
df2.UNKNOWN_PURP,
df2.FALSE_RED
]
print('[dev] matching chipscore stats: ' + utool.stats_str(all_score_list))
df2.figure(fnum=fnum, doclf=True, docla=True)
# Finds the knee
df2.plot(allscores_sorted, color=df2.ORANGE, label='all scores')
# get positions which are within rank bounds
for count, ((low, high), rankX_color) in reversed(list(enumerate(zip(rank_bounds, rank_colors)))):
rankX_flag_low = gtscore_ranks >= low
if high is not None:
rankX_flag_high = gtscore_ranks < high
rankX_flag = np.logical_and(rankX_flag_low, rankX_flag_high)
else:
rankX_flag = rankX_flag_low
rankX_allgtx = np.where(rankX_flag)[0]
rankX_gtxs = gtscore_sortxs[rankX_allgtx]
rankX_gtys = gtscore_ys[rankX_allgtx]
rankX_label = '%d <= gt rank' % low
if high is not None:
rankX_label += ' < %d' % high
if len(rankX_gtxs) > 0:
df2.plot(rankX_gtxs, rankX_gtys, 'o', color=rankX_color, label=rankX_label)
rowid = qcx2_res.itervalues().next().rowid
df2.set_logyscale_from_data(allscores_sorted)
df2.set_xlabel('chipmatch index')
df2.dark_background()
df2.set_figtitle('matching scores\n' + rowid)
df2.legend(loc='upper left')
#xmin = 0
#xmax = utool.order_of_magnitude_ceil(len(allscores_sorted))
#print('len_ = %r' % (len(allscores_sorted),))
#print('xmin = %r' % (xmin,))
#print('xmax = %r' % (xmax,))
#df2.gca().set_xlim(xmin, xmax)
df2.update()
#utool.embed()
# Second Plot
#data = sorted(zip(gtscore_sortxs, gtscore_ys, gtscore_ranks))
#gtxs = [x for (x, y, z) in data]
#gtys = [y for (x, y, z) in data]
#gtrs = [z for (x, y, z) in data]
#nongtxs = np.setdiff1d(np.arange(gtxs[0], gtxs[-1]), gtxs)
#min_ = min(gtxs)
#max_ = len(allscores_sorted)
#len_ = max_ - min_
#normsum = 0
#ratsum = 0
#gtxs = np.array(gtxs)
#nongtxs = np.array(nongtxs)
#for ix in xrange(min_, max_):
#nongtxs_ = nongtxs[nongtxs >= ix]
#gtxs_ = gtxs[gtxs >= ix]
#numer = allscores_sorted[gtxs_].sum()
#denom = allscores_sorted[nongtxs_].sum()
#ratio = (1 + numer) / (denom + 1)
#total_support = (len(gtxs_) + len(nongtxs_))
#normrat = ratio / total_support
#ratsum += ratio
#normsum += normrat
#print(total_support)
#print(ratsum / len_)
#print(normsum / len_)
#print(ratsum / allscores_sorted[min_:max_].sum())
#print(normsum / allscores_sorted[min_:max_].sum())
#index_gap = np.diff(gtxs)
#score_gap = np.diff(gtys)
#badness = (index_gap - 1) * score_gap
#np.arange(len(gtxs))
fnum += 1
return fnum
def plot_clusters(data, datax2_clusterx, centroids, num_pca_dims=3,
whiten=False):
""" Plots centroids and datapoints. Plots accurately up to 3 dimensions.
If there are more than 3 dimensions, PCA is used to recude the dimenionality
to the <num_pca_dims> principal components
"""
# http://www.janeriksolem.net/2012/03/isomap-with-scikit-learn.html
from plottool import draw_func2 as df2
data_dims = data.shape[1]
show_dims = min(num_pca_dims, data_dims)
if data_dims != show_dims:
# we can't physiologically see the data, so look at a projection
print('[akmeans] Doing PCA')
from sklearn import decomposition
pcakw = dict(copy=True, n_components=show_dims, whiten=whiten)
pca = decomposition.PCA(**pcakw).fit(data)
pca_data = pca.transform(data)
pca_clusters = pca.transform(centroids)
print('[akmeans] ...Finished PCA')
else:
# pca is not necessary
print('[akmeans] No need for PCA')
pca_data = data
pca_clusters = centroids
K = len(centroids)
print(pca_data.shape)
# Make a color for each cluster
colors = np.array(df2.distinct_colors(K, brightness=.95))
data_x = pca_data[:, 0]
data_y = pca_data[:, 1]
data_colors = colors[np.array(datax2_clusterx, dtype=np.int32)]
clus_x = pca_clusters[:, 0]
clus_y = pca_clusters[:, 1]
clus_colors = colors
# Create a figure
fig = df2.figure(1, doclf=True, docla=True)
if show_dims == 2:
ax = df2.plt.gca()
df2.plt.scatter(data_x, data_y, s=20, c=data_colors, marker='o', alpha=.2)
df2.plt.scatter(clus_x, clus_y, s=500, c=clus_colors, marker='*')
ax.autoscale(enable=False)
ax.set_aspect('equal')
df2.dark_background(ax)
if show_dims == 3:
from mpl_toolkits.mplot3d import Axes3D # NOQA
ax = fig.add_subplot(111, projection='3d')
data_z = pca_data[:, 2]
clus_z = pca_clusters[:, 2]
ax.scatter(data_x, data_y, data_z, s=20, c=data_colors, marker='o', alpha=.2)
ax.scatter(clus_x, clus_y, clus_z, s=500, c=clus_colors, marker='*')
ax.autoscale(enable=False)
ax.set_aspect('equal')
df2.dark_background(ax)
#ax.set_alpha(.1)
#ut.embed()
#ax.set_frame_on(False)
ax = df2.plt.gca()
waswhitestr = ' +whitening' * whiten
titlestr = ('AKmeans: K={K}.'
'PCA projection {data_dims}D -> {show_dims}D'
'{waswhitestr}').format(**locals())
ax.set_title(titlestr)
return fig