def main(): """ NAME pt_rot.py DESCRIPTION rotates pt according to specified age and plate SYNTAX pt_rot.py [command line options] OPTIONS -h prints help and quits -f file with lon lat plate age Dplate as space delimited input Dplate is the destination plate coordinates desires - default is "fixed south africa" Dplate should be one of: [nwaf, neaf,saf,aus, eur, ind, sam, ant, grn, nam] -ff file Efile, file has lat lon data file and Efile has sequential rotation poles: Elat Elon Omega -F OFILE, output pmag_results formatted file with rotated points stored in vgp_lon, vgp_lat default is to print out rotated lon, lat to standard output """ dir_path='.' PTS=[] ResRecs=[] ofile="" Dplates=['nwaf', 'neaf','saf','aus', 'eur', 'ind', 'sam', 'ant', 'grn', 'nam'] if '-WD' in sys.argv: ind = sys.argv.index('-WD') dir_path=sys.argv[ind+1] if '-h' in sys.argv: print main.__doc__ sys.exit() if '-F' in sys.argv: ind = sys.argv.index('-F') ofile=dir_path+'/'+sys.argv[ind+1] if '-f' in sys.argv: ind = sys.argv.index('-f') file=dir_path+'/'+sys.argv[ind+1] f=open(file,'rU') data=f.readlines() elif '-ff' in sys.argv: ind = sys.argv.index('-ff') file=dir_path+'/'+sys.argv[ind+1] f=open(file,'rU') data=f.readlines() Efile=dir_path+'/'+sys.argv[ind+2] f=open(Efile,'rU') edata=f.readlines() Poles=[] for p in edata: rec=p.split() pole=[float(rec[0]),float(rec[1]),float(rec[2])] # pole is lat/lon/omega Poles.append(pole) else: data=sys.stdin.readlines() for line in data: PtRec={} rec=line.split() PtRec['site_lon']=rec[0] PtRec['site_lat']=rec[1] if '-ff' in sys.argv: pt_lat,pt_lon=float(rec[1]),float(rec[0]) for pole in Poles: ptrot= pmag.PTrot(pole,[pt_lat],[pt_lon]) pt_lat=ptrot[0][0] pt_lon=ptrot[1][0] if ofile=="": print ptrot[1][0], ptrot[0][0] else: ResRec={'vgp_lat': '%7.1f'%(ptrot[0][0]),'vgp_lon':'%7.1f'%( ptrot[1][0])} ResRecs.append(ResRec) else: PtRec['cont']=rec[2] if PtRec['cont']=='af':PtRec['cont']='saf' # use fixed south africa PtRec['age']=rec[3] if len(rec)>4: PtRec['dcont']=rec[4] PTS.append(PtRec) if '-ff' not in sys.argv: for pt in PTS: pole='not specified' pt_lat=float(pt['site_lat']) pt_lon=float(pt['site_lon']) age=float(pt['age']) ptrot=[[pt_lat],[pt_lon]] if pt['cont']=='ib': pole=frp.get_pole(pt['cont'],age) ptrot= pmag.PTrot(pole,[pt_lat],[pt_lon]) pt_lat=ptrot[0][0] pt_lon=ptrot[1][0] pt['cont']='eur' if pt['cont']!='saf': pole1=frp.get_pole(pt['cont'],age) ptrot= pmag.PTrot(pole1,[pt_lat],[pt_lon]) if 'dcont' in pt.keys(): pt_lat=ptrot[0][0] pt_lon=ptrot[1][0] pole=frp.get_pole(pt['dcont'],age) pole[2]=-pole[2] ptrot= pmag.PTrot(pole,[pt_lat],[pt_lon]) if ofile=="": print ptrot[1][0], ptrot[0][0] else: ResRec={'vgp_lat': '%7.1f'%(ptrot[0][0]),'vgp_lon':'%7.1f'%( ptrot[1][0])} ResRecs.append(ResRec) else: if 'dcont' in pt.keys(): pole=frp.get_pole(pt['dcont'],age) pole[2]=-pole[2] ptrot= pmag.PTrot(pole,[pt_lat],[pt_lon]) print ptrot if ofile=="": print ptrot[1][0], ptrot[0][0] else: ResRec={'vgp_lat': '%7.1f'%(ptrot[0][0]),'vgp_lon':'%7.1f'%( ptrot[1][0])} ResRecs.append(ResRec) else: if ofile=="": print ptrot[1][0], ptrot[0][0] else: ResRec={'vgp_lat': '%7.1f'%(ptrot[0][0]),'vgp_lon':'%7.1f'%( ptrot[1][0])} ResRecs.append(ResRec) if len(ResRecs)>0: pmag.magic_write(ofile,ResRecs,'pmag_results')
def main(): """ NAME cont_rot.py DESCRIPTION rotates continental fragments according to specified Euler pole SYNTAX cont_rot.py [command line options] OPTIONS -h prints help and quits -con [af, congo, kala, aus, balt, eur, ind, sam, ant, grn, lau, nam, gond] , specify colon delimited list of continents to be displayed, e.g., af, af:aus], etc -age use finite rotations of Torsvik et al. 2008 for specific age (5 Ma increments <325Ma) rotates to paleomagnetic reference frame available conts: [congo kala aus eur ind sam ant grn nam] -sac include rotation of south african craton to pmag reference -sym [ro, bs, g^, r., b-, etc.] [1,5,10] symbol and size for continent colors are r=red,b=blue,g=green, etc. symbols are '.' for points, ^, for triangle, s for square, etc. -, for lines, -- for dotted lines, see matplotlib online documentation for plot() -eye ELAT ELON [specify eyeball location] -pfr PLAT PLON OMEGA [specify pole of finite rotation lat,lon and degrees] -ffr FFILE, specifies series of finite rotations vector in tab delimited file -sr treat poles as sequential rotations -fpp PFILE, specifies series of paleopoles from which euler poles can be calculated: vector in tab delimited file -pt LAT LON, specify a point to rotate along with continent -fpt PTFILE, specifies file with a series of points to be plotted -res [c,l,i,h] specify resolution (crude, low, intermediate, high] -fmt [png,jpg,svg,pdf] format for saved figure - pdf is default -sav saves plots and quits -prj PROJ, specify one of the supported projections: (see basemap.py online documentation) aeqd = Azimuthal Equidistant poly = Polyconic gnom = Gnomonic moll = Mollweide tmerc = Transverse Mercator nplaea = North-Polar Lambert Azimuthal mill = Miller Cylindrical merc = Mercator stere = Stereographic npstere = North-Polar Stereographic geos = Geostationary laea = Lambert Azimuthal Equal Area sinu = Sinusoidal spstere = South-Polar Stereographic lcc = Lambert Conformal npaeqd = North-Polar Azimuthal Equidistant eqdc = Equidistant Conic cyl = Cylindrical Equidistant omerc = Oblique Mercator aea = Albers Equal Area spaeqd = South-Polar Azimuthal Equidistant ortho = Orthographic cass= Cassini-Soldner splaea = South-Polar Lambert Azimuthal robin = Robinson DEFAULTS con: nam res: c prj: mollweide ELAT,ELON = 0,0 NB: high resolution or lines can be very slow """ dir_path='.' ocean=0 res='c' proj='moll' euler_file='' Conts=[] Poles=[] PTS=[] lat_0,lon_0=0.,0. fmt='pdf' sym='r.' symsize=5 plot=0 SEQ,age,SAC=0,0,0 rconts=['af','congo','kala','aus','eur','ind','sam','ant','grn','nam'] if '-WD' in sys.argv: ind = sys.argv.index('-WD') dir_path=sys.argv[ind+1] if '-h' in sys.argv: print main.__doc__ sys.exit() if '-fmt' in sys.argv: ind = sys.argv.index('-fmt') fmt=sys.argv[ind+1] if '-con' in sys.argv: ind = sys.argv.index('-con') Conts=sys.argv[ind+1].split(':') if '-age' in sys.argv: ind = sys.argv.index('-age') age=int(sys.argv[ind+1]) if age%5!=0 and age>320: print main.__doc__ print 'age must be multiple of 5 less than 325' sys.exit() import pmagpy.frp as frp if '-res' in sys.argv: ind = sys.argv.index('-res') res=sys.argv[ind+1] if res!= 'c' and res!='l': print 'this resolution will take a while - be patient' if '-prj' in sys.argv: ind = sys.argv.index('-prj') proj=sys.argv[ind+1] if '-sav' in sys.argv: plot=1 if '-eye' in sys.argv: ind = sys.argv.index('-eye') lat_0=float(sys.argv[ind+1]) lon_0=float(sys.argv[ind+2]) if '-pt' in sys.argv: ind = sys.argv.index('-pt') pt_lat=float(sys.argv[ind+1]) pt_lon=float(sys.argv[ind+2]) PTS.append([pt_lat,pt_lon]) if '-sym' in sys.argv: ind = sys.argv.index('-sym') sym=sys.argv[ind+1] symsize=int(sys.argv[ind+2]) # if '-rsym' in sys.argv: # ind = sys.argv.index('-rsym') # rsym=sys.argv[ind+1] # rsymsize=int(sys.argv[ind+2]) if '-sr' in sys.argv: SEQ=1 if '-sac' in sys.argv: SAC=1 if '-pfr' in sys.argv: ind = sys.argv.index('-pfr') Poles.append([float(sys.argv[ind+1]),float(sys.argv[ind+2]),float(sys.argv[ind+3])]) elif '-ffr' in sys.argv: ind = sys.argv.index('-ffr') file=dir_path+'/'+sys.argv[ind+1] f=open(file,'rU') edata=f.readlines() for line in edata: rec=line.split() Poles.append([float(rec[0]),float(rec[1]),float(rec[2])]) elif '-fpp' in sys.argv: ind = sys.argv.index('-fpp') file=dir_path+'/'+sys.argv[ind+1] f=open(file,'rU') pdata=f.readlines() for line in pdata: rec=line.split() # transform paleopole to Euler pole taking shortest route Poles.append([0.,float(rec[1])-90.,90.-float(rec[0])]) if '-fpt' in sys.argv: ind = sys.argv.index('-fpt') file=dir_path+'/'+sys.argv[ind+1] f=open(file,'rU') ptdata=f.readlines() for line in ptdata: rec=line.split() PTS.append([float(rec[0]),float(rec[1])]) FIG={'map':1} pmagplotlib.plot_init(FIG['map'],6,6) # read in er_sites file if res=='c':skip=8 if res=='l':skip=5 if res=='i':skip=2 if res=='h':skip=1 cnt=0 Opts={'latmin':-90,'latmax':90,'lonmin':0.,'lonmax':360.,'lat_0':lat_0,'lon_0':lon_0,'proj':proj,'sym':sym,'symsize':3,'pltgrid':0,'res':res,'boundinglat':0.} if proj=='merc': Opts['latmin']=-70 Opts['latmax']=70 Opts['lonmin']=-180 Opts['lonmax']=180 pmagplotlib.plotMAP(FIG['map'],[],[],Opts) # plot the basemap Opts['pltgrid']=-1 # turn off replotting of gridlines if '-pt' in sys.argv: Opts['sym']=sym Opts['symsize']=symsize pmagplotlib.plotMAP(FIG['map'],[pt_lat],[pt_lon],Opts) if plot==0:pmagplotlib.drawFIGS(FIG) for cont in Conts: Opts['sym']=sym lats,lons=[],[] if age!=0: Poles=[] rcont=cont if rcont not in rconts: print main.__doc__ print rcont print 'continents must be one of following: ' print rconts sys.exit() if rcont=='congo':rcont='nwaf' if rcont=='kala':rcont='neaf' if rcont=='sam':rcont='sac' if rcont=='ant':rcont='eant' if rcont!='af': Poles.append(frp.get_pole(rcont,age)) else: Poles.append([0,0,0]) if SAC==1:Poles.append(frp.get_pole('saf',age)) SEQ=1 if Poles[-1]=='NONE': print 'continent does not exist for rotation, try again ' sys.exit() data=continents.get_continent(cont+'.asc') for line in data: if float(line[0])==0 and float(line[1])==0:line[0]='100.' # change stupid 0,0s to delimeters with lat=100 if float(line[0])>90: lats.append(float(line[0])) lons.append(float(line[1])) elif cnt%skip==0: lats.append(float(line[0])) lons.append(float(line[1])) cnt+=1 if len(lats)>0 and len(Poles)==0: pmagplotlib.plotMAP(FIG['map'],lats,lons,Opts) if plot==0:pmagplotlib.drawFIGS(FIG) newlats,newlons=[],[] for lat in lats:newlats.append(lat) for lon in lons:newlons.append(lon) Opts['pltgrid']=-1 # turns off replotting of meridians and parallels for pole in Poles: Rlats,Rlons=pmag.PTrot(pole,newlats,newlons) Opts['sym']=sym Opts['symsize']=3 if SEQ==0: pmagplotlib.plotMAP(FIG['map'],Rlats,Rlons,Opts) elif pole==Poles[-1]: # plot only last pole for sequential rotations pmagplotlib.plotMAP(FIG['map'],Rlats,Rlons,Opts) if plot==0:pmagplotlib.drawFIGS(FIG) if SEQ==1: # treat poles as sequential rotations newlats,newlons=[],[] for lat in Rlats:newlats.append(lat) for lon in Rlons:newlons.append(lon) for pt in PTS: pt_lat=pt[0] pt_lon=pt[1] Opts['sym']='r*' Opts['symsize']=5 pmagplotlib.plotMAP(FIG['map'],[pt[0]],[pt[1]],Opts) if plot==0:pmagplotlib.drawFIGS(FIG) Opts['pltgrid']=-1 # turns off replotting of meridians and parallels for pole in Poles: Opts['sym']=sym Opts['symsize']=symsize Rlats,Rlons=pmag.PTrot(pole,[pt_lat],[pt_lon]) print Rlats,Rlons pmagplotlib.plotMAP(FIG['map'],Rlats,Rlons,Opts) if plot==0:pmagplotlib.drawFIGS(FIG) Opts['sym']='g^' Opts['symsize']=5 pmagplotlib.plotMAP(FIG['map'],[pole[0]],[pole[1]],Opts) if plot==0:pmagplotlib.drawFIGS(FIG) files={} for key in FIG.keys(): files[key]='Cont_rot'+'.'+fmt if plot==1: pmagplotlib.saveP(FIG,files) sys.exit() if pmagplotlib.isServer: black = '#000000' purple = '#800080' titles={} titles['eq']='Site Map' FIG = pmagplotlib.addBorders(FIG,titles,black,purple) pmagplotlib.saveP(FIG,files) else: pmagplotlib.drawFIGS(FIG) ans=raw_input(" S[a]ve to save plot, Return to quit: ") if ans=="a": pmagplotlib.saveP(FIG,files)
def main(): """ NAME pt_rot.py DESCRIPTION rotates pt according to specified age and plate SYNTAX pt_rot.py [command line options] OPTIONS -h prints help and quits -f file with lon lat plate age Dplate as space delimited input Dplate is the destination plate coordinates desires - default is "fixed south africa" Dplate should be one of: [nwaf, neaf,saf,aus, eur, ind, sam, ant, grn, nam] -ff file Efile, file has lat lon data file and Efile has sequential rotation poles: Elat Elon Omega -F OFILE, output pmag_results formatted file with rotated points stored in vgp_lon, vgp_lat default is to print out rotated lon, lat to standard output """ dir_path='.' PTS=[] ResRecs=[] ofile="" Dplates=['nwaf', 'neaf','saf','aus', 'eur', 'ind', 'sam', 'ant', 'grn', 'nam'] if '-WD' in sys.argv: ind = sys.argv.index('-WD') dir_path=sys.argv[ind+1] if '-h' in sys.argv: print(main.__doc__) sys.exit() if '-F' in sys.argv: ind = sys.argv.index('-F') ofile=dir_path+'/'+sys.argv[ind+1] if '-f' in sys.argv: ind = sys.argv.index('-f') file=dir_path+'/'+sys.argv[ind+1] f=open(file,'r') data=f.readlines() elif '-ff' in sys.argv: ind = sys.argv.index('-ff') file=dir_path+'/'+sys.argv[ind+1] f=open(file,'r') data=f.readlines() Efile=dir_path+'/'+sys.argv[ind+2] f=open(Efile,'r') edata=f.readlines() Poles=[] for p in edata: rec=p.split() pole=[float(rec[0]),float(rec[1]),float(rec[2])] # pole is lat/lon/omega Poles.append(pole) else: data=sys.stdin.readlines() for line in data: PtRec={} rec=line.split() PtRec['site_lon']=rec[0] PtRec['site_lat']=rec[1] if '-ff' in sys.argv: pt_lat,pt_lon=float(rec[1]),float(rec[0]) for pole in Poles: ptrot= pmag.PTrot(pole,[pt_lat],[pt_lon]) pt_lat=ptrot[0][0] pt_lon=ptrot[1][0] if ofile=="": print(ptrot[1][0], ptrot[0][0]) else: ResRec={'vgp_lat': '%7.1f'%(ptrot[0][0]),'vgp_lon':'%7.1f'%( ptrot[1][0])} ResRecs.append(ResRec) else: PtRec['cont']=rec[2] if PtRec['cont']=='af':PtRec['cont']='saf' # use fixed south africa PtRec['age']=rec[3] if len(rec)>4: PtRec['dcont']=rec[4] PTS.append(PtRec) if '-ff' not in sys.argv: for pt in PTS: pole='not specified' pt_lat=float(pt['site_lat']) pt_lon=float(pt['site_lon']) age=float(pt['age']) ptrot=[[pt_lat],[pt_lon]] if pt['cont']=='ib': pole=frp.get_pole(pt['cont'],age) ptrot= pmag.PTrot(pole,[pt_lat],[pt_lon]) pt_lat=ptrot[0][0] pt_lon=ptrot[1][0] pt['cont']='eur' if pt['cont']!='saf': pole1=frp.get_pole(pt['cont'],age) ptrot= pmag.PTrot(pole1,[pt_lat],[pt_lon]) if 'dcont' in list(pt.keys()): pt_lat=ptrot[0][0] pt_lon=ptrot[1][0] pole=frp.get_pole(pt['dcont'],age) pole[2]=-pole[2] ptrot= pmag.PTrot(pole,[pt_lat],[pt_lon]) if ofile=="": print(ptrot[1][0], ptrot[0][0]) else: ResRec={'vgp_lat': '%7.1f'%(ptrot[0][0]),'vgp_lon':'%7.1f'%( ptrot[1][0])} ResRecs.append(ResRec) else: if 'dcont' in list(pt.keys()): pole=frp.get_pole(pt['dcont'],age) pole[2]=-pole[2] ptrot= pmag.PTrot(pole,[pt_lat],[pt_lon]) print(ptrot) if ofile=="": print(ptrot[1][0], ptrot[0][0]) else: ResRec={'vgp_lat': '%7.1f'%(ptrot[0][0]),'vgp_lon':'%7.1f'%( ptrot[1][0])} ResRecs.append(ResRec) else: if ofile=="": print(ptrot[1][0], ptrot[0][0]) else: ResRec={'vgp_lat': '%7.1f'%(ptrot[0][0]),'vgp_lon':'%7.1f'%( ptrot[1][0])} ResRecs.append(ResRec) if len(ResRecs)>0: pmag.magic_write(ofile,ResRecs,'pmag_results')