def runDER():
# 2 objects. all variables ending with _AN should be an array of objects
OAN = 2
# number of vertices
nv = 32
# max time step
max_dt = 5e-3
# min time step
min_dt = 1e-4
# limit f*dt per step
limit_f_times_dt = 0.0025
# initial center of circle
x0_AN = [[-0.5, 0.75], [0.5, 0.75]]
# initial bulk velocity
u0_AN = [[1.25, -2.5], [-1.25, -2.5]]
# initial inflation pressure (N/m)
InflationPressure_AN = [2.5, 2.5]
# circle radius
CircleRadius_AN = [0.15, 0.15]
# circumference length
CircumferenceLength_AN = [2 * pi * i for i in CircleRadius_AN]
# Density
rho_AN = [1000.0, 1000.0]
# Cross-sectional radius of rod
r0 = 3.25e-3
# Young's modulus
Y_AN = [1e7, 1e7]
# gravity
g = [0.0, -9.81]
# dynamic friction coeff.
μ = 0.4
# Tolerance on force function. This is multiplied by ScaleSolver so that we do not have to update it based on edge length and time step size
tol = 5e-7
# Maximum number of iterations in Newton Solver
maximum_iter = 100
# Total simulation time (it exits after t=totalTime)
totalTime = 5
# Utility quantities
EI_AN = [Y * pi * r0 ** 4 / 4 for Y in Y_AN]
EA_AN = [Y * pi * r0 ** 2 for Y in Y_AN]
dm_AN = [pi * r0 ** 2 * CircumferenceLength_AN[oa] * rho_AN[oa] / nv for oa in range(OAN)] # mass per node
nodes_AN = []
for oa in range(OAN):
nodes_oa = np.empty((nv, 2))
x0_oa = x0_AN[oa]
for c in range(nv):
nodes_oa[c, 0] = x0_oa[0] + CircleRadius_AN[oa] * cos(c * 2 * pi / nv + pi / 2)
nodes_oa[c, 1] = x0_oa[1] + CircleRadius_AN[oa] * sin(c * 2 * pi / nv + pi / 2)
nodes_AN.append(nodes_oa)
ScaleSolver_AN = [dm * np.linalg.norm(g) for dm in dm_AN] # i don't know why. maybe just take it as granted
# mass
m_AN = [np.full(2 * nv, dm) for dm in dm_AN]
# gravity
garr = np.tile(g, nv)
# Reference length and Voronoi length
refLen_AN = []
for oa in range(OAN):
refLen_oa = np.empty(nv)
nodes_oa = nodes_AN[oa]
for c in range(nv - 1):
dx = nodes_oa[c + 1] - nodes_oa[c]
refLen_oa[c] = np.linalg.norm(dx)
refLen_oa[nv - 1] = np.linalg.norm(nodes_oa[0] - nodes_oa[nv - 1])
refLen_AN.append(refLen_oa)
voronoiRefLen_AN = []
for oa in range(OAN):
voronoiRefLen_oa = np.empty(nv)
refLen_oa = refLen_AN[oa]
for c in range(nv):
voronoiRefLen_oa[c] = 0.5 * (refLen_oa[c - 1] + refLen_oa[c])
voronoiRefLen_AN.append(voronoiRefLen_oa)
# Initial
q0_AN = []
for oa in range(OAN):
q0 = np.zeros(2 * nv)
nodes = nodes_AN[oa]
for c in range(nv):
q0[2 * c] = nodes[c, 0] # initial x-coord
q0[2 * c + 1] = nodes[c, 1] # initial y-coord
q0_AN.append(q0)
# Reference Area
refA_AN = [area(q0, nv) for q0 in q0_AN]
# Constrained dofs
mapCons_AN = [np.zeros(2 * nv) for _ in range(OAN)]
ForceAll_AN = [np.zeros(2 * nv) for _ in range(OAN)]
u_AN = []
for oa in range(OAN):
u_oa = np.zeros(2 * nv)
u0_oa = u0_AN[oa]
for c in range(nv):
u_oa[2 * c] = u0_oa[0]
u_oa[2 * c + 1] = u0_oa[1]
u_AN.append(u_oa)
# set dt as max at the beginning
dt = max_dt
def objfunBW(q, oa, mapCons):
nonlocal ForceAll_AN
mMatInv = np.diag(1 / m_AN[oa])
Ident2nv = np.eye(2 * nv)
imposedAcceleration = np.zeros(2 * nv)
q0 = q0_AN[oa]
u = u_AN[oa]
m = m_AN[oa]
# Figure out the imposed acceleration
for c in range(nv):
xPos = q0[2 * c]
# Case 2: one dof is constrained
if mapCons[2 * c + 1] == 1:
dY = q0[2 * c + 1] - slopeWall(xPos) * q0[2 * c]
dRDesired = dY * math.sin(thetaNormal)
q0Point = np.array([q0[2 * c], q0[2 * c + 1]])
u0Point = np.array([u[2 * c], u[2 * c + 1]])
qDesired = q0Point - nWall(xPos).T * dRDesired
imposedAcceleration[2 * c : 2 * c + 2] = (qDesired - q0Point) / dt - (nWall(xPos) * np.dot(u0Point, nWall(xPos))).T
mMatInv[2 * c: 2 * c + 2, 2 * c: 2 * c + 2] = np.dot(invMass(xPos), np.array([[1 / m[2 * c], 0], [0, 1 / m[2 * c + 1]]]))
else:
imposedAcceleration[2 * c : 2 * c + 2] = np.array([0, 0])
mMatInv[2 * c: 2 * c + 2, 2 * c: 2 * c + 2] = np.array([[1 / m[2 * c], 0], [0, 1 / m[2 * c + 1]]])
# Newton-Raphson scheme
iter = 0 # number of iterations
# Initial guess for delta V
dV = (q - q0) / dt - u
normfRecords = []
while True:
# Figure out the velocities
uNew = u + dV
# Figure out the positions
q = q0 + dt * uNew
# Get forces
Fb, Jb = getFb(q, EI_AN[oa], nv, voronoiRefLen_AN[oa], -2 * pi / nv, isCircular=True)
Fs, Js = getFs(q, EA_AN[oa], nv, refLen_AN[oa], isCircular=True)
Fg = m * garr
Ff = getFf(q, u, nv, mapCons_AN[oa], μ, ForceAll_AN[oa])
pressureRatio = refA_AN[oa] / area(q, nv)
Fp, Jp = getFp(q, nv, refLen_AN[oa], InflationPressure_AN[oa] * pressureRatio)
Forces = Fb + Fs + Fg + Fp + Ff
# Equation of motion
ForceAll_AN[oa] = m * dV / dt - Forces # actual force
f = dV - np.dot(dt * mMatInv, Forces) - imposedAcceleration # force used for Baraff-Witkin mass modification
# Get the norm
normf = np.linalg.norm(f) * np.mean(m) / dt
normfRecords.append(normf)
if normf < tol * ScaleSolver_AN[oa]:
print("Converged after %d loops" % iter)
break
if iter > maximum_iter:
print("Normf before exit", normfRecords)
raise Exception('Cannot converge')
Jelastic = Jb + Js + Jp
J = Ident2nv - dt ** 2 * np.dot(mMatInv, Jelastic)
dV = dV - np.linalg.solve(J, f)
iter += 1
return q, ForceAll_AN[oa]
# Time marching
ctime = 0
outputData = [{'time': ctime, 'data': [q0.tolist() for q0 in q0_AN]}]
def checkMaxAndHackTimeIfNecessary(ForceAll): # check whether max force is too large. if so, go back in time and reduce step size
nonlocal dt, ctime
maxF = np.amax(ForceAll)
if (dt > min_dt) and (maxF * dt > limit_f_times_dt): # du too large!
relax_ratio = limit_f_times_dt / maxF / dt # we may contract dt by this ratio. but to be efficient, we don't contract that much
dt = max((0.3 * relax_ratio + 0.45) * dt, min_dt)
print('Reducing dt and recompute')
return True
else:
return False
steps_attempted = 0
while ctime <= totalTime:
print('t = %f, dt = %f' % (ctime, dt))
steps_attempted += 1
q0_work_AN = q0_AN.copy()
u_work_AN = u_AN.copy()
mapCons_work_AN = [mapCons.copy() for mapCons in mapCons_AN]
redo = False
for oa in range(OAN):
q0 = q0_AN[oa]
mapCons = mapCons_work_AN[oa]
# step 1: predictor
qNew, ForceAll = objfunBW(q0, oa, mapCons)
if checkMaxAndHackTimeIfNecessary(ForceAll):
redo = True
break
# step 2: corrector
changeMade = False # flag to identify if another step is needed
for c in range(nv):
xPos = qNew[2 * c]
yPos = qNew[2 * c + 1]
boundaryY = slopeWall(xPos) * xPos
if (not mapCons[2 * c + 1]) and yPos < boundaryY:
print("Adding constraint @ %d" % c)
mapCons[2 * c + 1] = 1
changeMade = True
# detect and delete constrained dof
for c in range(nv):
xPos = qNew[2 * c]
yPos = qNew[2 * c + 1]
boundaryY = slopeWall(xPos) * xPos
# Delete unnecessary constraints
if mapCons[2 * c + 1]:
fReaction = ForceAll[2 * c: 2 * c + 2]
fNormal = np.dot(fReaction, nWall(xPos))
# Based on reaction force, release the constraint
if fNormal <= 0 and yPos >= boundaryY - 2e-6: # reaction force is negative
print("Removing constraint @ %d" % c)
mapCons[2 * c + 1] = 0 # unconstrain it
changeMade = True
if changeMade:
qNew, ForceAll = objfunBW(q0, oa, mapCons)
if checkMaxAndHackTimeIfNecessary(ForceAll):
redo = True
break
u_work_AN[oa] = (qNew - q0) / dt
# Update x0
q0_work_AN[oa] = qNew
if redo:
continue
# detect collision with each other
for target in range(OAN):
q_target = q0_work_AN[target]
for surface in range(OAN):
if target == surface:
continue
q_surface = q0_work_AN[surface]
polygon = Polygon([(q_surface[2 * c], q_surface[2 * c + 1]) for c in range(nv)])
for c in range(nv):
if polygon.contains(Point(q_target[2 * c], q_target[2 * c + 1])):
# we have a problem here
pass
q0_AN = q0_work_AN
u_AN = u_work_AN
mapCons_AN = mapCons_work_AN
ctime += dt
output = {'time': ctime, 'data': [q0.tolist() for q0 in q0_AN]}
outputData.append(output)
relax_ratio = limit_f_times_dt / max([np.amax(ForceAll) for ForceAll in ForceAll_AN]) / dt
if (dt < max_dt) and (relax_ratio > 1):
dt = min((0.6 * relax_ratio + 0.4) * dt, max_dt)
print('Increasing dt')
print('Steps attempted: %d' % steps_attempted)
print('Steps succeeded: %d' % (len(outputData) - 1))
return {'meta': {'radius': r0, 'closed': True, 'ground': True, 'groundAngle': math.degrees(thetaNormal) - 90, 'numberOfStructure': OAN}, 'frames': outputData}
def objfunBW(q, oa, mapCons):
nonlocal ForceAll_AN
mMatInv = np.diag(1 / m_AN[oa])
Ident2nv = np.eye(2 * nv)
imposedAcceleration = np.zeros(2 * nv)
q0 = q0_AN[oa]
u = u_AN[oa]
m = m_AN[oa]
# Figure out the imposed acceleration
for c in range(nv):
xPos = q0[2 * c]
# Case 2: one dof is constrained
if mapCons[2 * c + 1] == 1:
dY = q0[2 * c + 1] - slopeWall(xPos) * q0[2 * c]
dRDesired = dY * math.sin(thetaNormal)
q0Point = np.array([q0[2 * c], q0[2 * c + 1]])
u0Point = np.array([u[2 * c], u[2 * c + 1]])
qDesired = q0Point - nWall(xPos).T * dRDesired
imposedAcceleration[2 * c : 2 * c + 2] = (qDesired - q0Point) / dt - (nWall(xPos) * np.dot(u0Point, nWall(xPos))).T
mMatInv[2 * c: 2 * c + 2, 2 * c: 2 * c + 2] = np.dot(invMass(xPos), np.array([[1 / m[2 * c], 0], [0, 1 / m[2 * c + 1]]]))
else:
imposedAcceleration[2 * c : 2 * c + 2] = np.array([0, 0])
mMatInv[2 * c: 2 * c + 2, 2 * c: 2 * c + 2] = np.array([[1 / m[2 * c], 0], [0, 1 / m[2 * c + 1]]])
# Newton-Raphson scheme
iter = 0 # number of iterations
# Initial guess for delta V
dV = (q - q0) / dt - u
normfRecords = []
while True:
# Figure out the velocities
uNew = u + dV
# Figure out the positions
q = q0 + dt * uNew
# Get forces
Fb, Jb = getFb(q, EI_AN[oa], nv, voronoiRefLen_AN[oa], -2 * pi / nv, isCircular=True)
Fs, Js = getFs(q, EA_AN[oa], nv, refLen_AN[oa], isCircular=True)
Fg = m * garr
Ff = getFf(q, u, nv, mapCons_AN[oa], μ, ForceAll_AN[oa])
pressureRatio = refA_AN[oa] / area(q, nv)
Fp, Jp = getFp(q, nv, refLen_AN[oa], InflationPressure_AN[oa] * pressureRatio)
Forces = Fb + Fs + Fg + Fp + Ff
# Equation of motion
ForceAll_AN[oa] = m * dV / dt - Forces # actual force
f = dV - np.dot(dt * mMatInv, Forces) - imposedAcceleration # force used for Baraff-Witkin mass modification
# Get the norm
normf = np.linalg.norm(f) * np.mean(m) / dt
normfRecords.append(normf)
if normf < tol * ScaleSolver_AN[oa]:
print("Converged after %d loops" % iter)
break
if iter > maximum_iter:
print("Normf before exit", normfRecords)
raise Exception('Cannot converge')
Jelastic = Jb + Js + Jp
J = Ident2nv - dt ** 2 * np.dot(mMatInv, Jelastic)
dV = dV - np.linalg.solve(J, f)
iter += 1
return q, ForceAll_AN[oa]
def runDER():
# number of vertices
nv = 32
# max time step
max_dt = 5e-3
# min time step
min_dt = 1e-4
# limit f*dt per step
limit_f_times_dt = 0.002
# initial center of circle
x0 = [0.0, 0.2]
# initial inflation pressure (N/m)
InflationPressure = 0
# circle radius
CircleRadius = 0.15
# circumference length
CircumferenceLength = 2 * pi * CircleRadius
# Density
rho = 1000.0
# Cross-sectional radius of rod
r0 = 3.25e-3
# Young's modulus
Y = 1.5e6
# gravity
g = [0.0, -9.81]
# dynamic friction coeff.
μ = 0.5
# Tolerance on force function. This is multiplied by ScaleSolver so that we do not have to update it based on edge length and time step size
tol = 5e-7
# Maximum number of iterations in Newton Solver
maximum_iter = 100
# Total simulation time (it exits after t=totalTime)
totalTime = 12.5
# Utility quantities
EI = Y * pi * r0**4 / 4
EA = Y * pi * r0**2
dm = pi * r0**2 * CircumferenceLength * rho / nv # mass per node
nodes = np.empty((nv, 2))
for c in range(nv):
nodes[c, 0] = x0[0] + CircleRadius * cos(c * 2 * pi / nv + pi / 2)
nodes[c, 1] = x0[1] + CircleRadius * sin(c * 2 * pi / nv + pi / 2)
ScaleSolver = dm * np.linalg.norm(
g) # i don't know why. maybe just take it as granted
# mass
m = np.full(2 * nv, dm)
# gravity
garr = np.tile(g, nv)
# Reference length and Voronoi length
refLen = np.empty(nv)
for c in range(nv - 1):
dx = nodes[c + 1] - nodes[c]
refLen[c] = np.linalg.norm(dx)
refLen[nv - 1] = np.linalg.norm(nodes[0] - nodes[nv - 1])
voronoiRefLen = np.empty(nv)
for c in range(nv):
voronoiRefLen[c] = 0.5 * (refLen[c - 1] + refLen[c])
# Initial
q0 = np.zeros(2 * nv)
for c in range(nv):
q0[2 * c] = nodes[c, 0] # initial x-coord
q0[2 * c + 1] = nodes[c, 1] # initial y-coord
# Reference Area
refA = area(q0, nv)
# Constrained dofs
mapCons = np.zeros(2 * nv)
ForceAll = np.zeros(2 * nv)
u = np.zeros(2 * nv)
for c in range(nv):
u[2 * c] = 0.0
u[2 * c + 1] = 0.0
# set dt as max at the beginning
dt = max_dt
def objfunBW(q, uProjected):
nonlocal ForceAll
mMatInv = np.diag(1 / m)
Ident2nv = np.eye(2 * nv)
imposedAcceleration = np.zeros(2 * nv)
# Figure out the imposed acceleration
for c in range(nv):
xPos = q0[2 * c]
# Case 1: both dofs are constrained
if mapCons[2 * c] and mapCons[2 * c + 1] == 1:
uProjectedPoint = uProjected[2 * c:2 * c + 2]
uPerp = np.dot(uProjectedPoint, nWall(xPos)) * nWall(xPos)
normU = np.linalg.norm(uPerp)
if normU < (CircumferenceLength / 9.81) * 1e-3: # very small
normUinv = 0
else:
normUinv = 1 / normU
dY = q0[2 * c + 1] - slopeWall(xPos) * q0[2 * c]
dRDesired = dY * math.sin(thetaNormal)
tpseudo = dRDesired * normUinv
q0Point = np.array([q0[2 * c], q0[2 * c + 1]])
u0Point = np.array([u[2 * c], u[2 * c + 1]])
qDesired = q0Point + tpseudo * uProjectedPoint
imposedAcceleration[2 * c:2 * c +
2] = (qDesired - q0Point) / dt - u0Point
mMatInv[2 * c:2 * c + 2, 2 * c:2 * c + 2] = np.array([[0, 0],
[0, 0]])
# Case 2: one dof is constrained
elif mapCons[2 * c + 1] == 1:
dY = q0[2 * c + 1] - slopeWall(xPos) * q0[2 * c]
dRDesired = dY * math.sin(thetaNormal)
q0Point = np.array([q0[2 * c], q0[2 * c + 1]])
u0Point = np.array([u[2 * c], u[2 * c + 1]])
qDesired = q0Point - nWall(xPos).T * dRDesired
imposedAcceleration[2 * c:2 * c +
2] = (qDesired - q0Point) / dt - (
nWall(xPos) *
np.dot(u0Point, nWall(xPos))).T
mMatInv[2 * c:2 * c + 2, 2 * c:2 * c + 2] = np.dot(
invMass(xPos),
np.array([[1 / m[2 * c], 0], [0, 1 / m[2 * c + 1]]]))
else:
imposedAcceleration[2 * c:2 * c + 2] = np.array([0, 0])
mMatInv[2 * c:2 * c + 2,
2 * c:2 * c + 2] = np.array([[1 / m[2 * c], 0],
[0, 1 / m[2 * c + 1]]])
# Newton-Raphson scheme
iter = 0 # number of iterations
# Initial guess for delta V
dV = (q - q0) / dt - u
normfRecords = []
while True:
# Figure out the velocities
uNew = u + dV
# Figure out the positions
q = q0 + dt * uNew
# Get forces
Fb, Jb = getFb(q,
EI,
nv,
voronoiRefLen,
-2 * pi / nv,
isCircular=True)
Fs, Js = getFs(q, EA, nv, refLen, isCircular=True)
Fg = m * garr
Ff = getFf(q, u, nv, mapCons, μ, ForceAll)
pressureRatio = refA / area(q, nv)
Fp, Jp = getFp(q, nv, refLen, InflationPressure * pressureRatio)
Forces = Fb + Fs + Fg + Fp + Ff
# Equation of motion
ForceAll = m * dV / dt - Forces # actual force
f = dV - np.dot(
dt * mMatInv, Forces
) - imposedAcceleration # force used for Baraff-Witkin mass modification
# Get the norm
normf = np.linalg.norm(f) * np.mean(m) / dt
normfRecords.append(normf)
if normf < tol * ScaleSolver:
print("Converged after %d loops" % iter)
break
if iter > maximum_iter:
print("Normf before exit", normfRecords)
raise Exception('Cannot converge')
Jelastic = Jb + Js + Jp
J = Ident2nv - dt**2 * np.dot(mMatInv, Jelastic)
dV = dV - np.linalg.solve(J, f)
iter += 1
return q, ForceAll
# Time marching
ctime = 0
outputData = [{'time': ctime, 'data': q0.tolist()}]
def checkMaxAndHackTimeIfNecessary(
): # check whether max force is too large. if so, go back in time and reduce step size
nonlocal dt, ctime
maxF = np.amax(ForceAll)
if (dt > min_dt) and (maxF * dt > limit_f_times_dt): # du too large!
relax_ratio = limit_f_times_dt / maxF / dt # we may contract dt by this ratio. but to be efficient, we don't contract that much
dt = max((0.3 * relax_ratio + 0.45) * dt, min_dt)
print('Reducing dt and recompute')
return True
else:
return False
steps_attempted = 0
while ctime <= totalTime:
print('t = %f, dt = %f' % (ctime, dt))
steps_attempted += 1
mapConsBackup = mapCons.copy()
uProjected = u.copy()
# step 1: predictor
qNew, ForceAll = objfunBW(q0, uProjected)
if checkMaxAndHackTimeIfNecessary():
continue
# step 2: corrector
changeMade = False # flag to identify if another step is needed
for c in range(nv):
xPos = qNew[2 * c]
yPos = qNew[2 * c + 1]
boundaryY = slopeWall(xPos) * xPos
if (not mapCons[2 * c + 1]) and yPos < boundaryY:
print("Adding constraint @ %d" % c)
mapCons[2 * c + 1] = 1
uProjected[2 * c] = (qNew[2 * c] - q0[2 * c]) / dt
uProjected[2 * c + 1] = (qNew[2 * c + 1] - q0[2 * c + 1]) / dt
changeMade = True
# detect and delete constrained dof
for c in range(nv):
xPos = qNew[2 * c]
yPos = qNew[2 * c + 1]
boundaryY = slopeWall(xPos) * xPos
# Delete unnecessary constraints
if mapCons[2 * c + 1]:
fReaction = ForceAll[2 * c:2 * c + 2]
fNormal = np.dot(fReaction, nWall(xPos))
# Based on reaction force, release the constraint
if fNormal <= 0 and yPos >= boundaryY - 2e-6: # reaction force is negative
print("Removing constraint @ %d" % c)
mapCons[2 * c + 1] = 0 # unconstrain it
changeMade = True
if changeMade:
qNew, ForceAll = objfunBW(q0, uProjected)
if checkMaxAndHackTimeIfNecessary():
mapCons = mapConsBackup
continue
ctime += dt
u = (qNew - q0) / dt
# Update x0
q0 = qNew
output = {'time': ctime, 'data': q0.tolist()}
outputData.append(output)
relax_ratio = limit_f_times_dt / np.amax(ForceAll) / dt
if (dt < max_dt) and (relax_ratio > 1):
dt = min((0.6 * relax_ratio + 0.4) * dt, max_dt)
print('Increasing dt')
print('Steps attempted: %d' % steps_attempted)
print('Steps succeeded: %d' % (len(outputData) - 1))
return {
'meta': {
'radius': r0,
'closed': True,
'ground': True,
'groundAngle': math.degrees(thetaNormal) - 90
},
'frames': outputData
}