def population_init(self):
'''(re-)initializes population'''
self.population = initialize_population(self.Config,
self.Config.mean_age,
self.Config.max_age,
self.Config.xbounds,
self.Config.ybounds)
def __init__(self):
self.Config = Configuration()
self.frame = 0
self.population = initialize_population(self.Config,
self.Config.xbounds,
self.Config.ybounds)
self.pop_tracker = Population_trackers()
self.peak_infections = 0
mean_age=mean_age,
max_age=max_age,
age_dependent_risk=age_dependent_risk,
risk_age=risk_age,
critical_age=critical_age,
critical_mortality_chance=critical_mortality_chance,
risk_increase=risk_increase,
proportion_distancing=proportion_distancing,
recovery_duration=recovery_duration,
mortality_chance=mortality_chance,
treatment_factor=treatment_factor,
no_treatment_factor=no_treatment_factor,
treatment_dependent_risk=treatment_dependent_risk)
#initalize population
population = initialize_population(configuration)
population[:,13] = wander_range_x #set wander ranges to default specified value
population[:,14] = wander_range_y #set wander ranges to default specified value
#initialize destination matrix
destinations = initialize_destination_matrix(pop_size, 1)
#create render folder if doesn't exist
if not os.path.exists('render/'):
os.makedirs('render/')
#define figure
fig = plt.figure(figsize=(5,7))
spec = fig.add_gridspec(ncols=1, nrows=2, height_ratios=[5,2])
ax1 = fig.add_subplot(spec[0,0])
# risk parameters
age_dependent_risk = True # whether risk increases with age
risk_age = 55 # age where mortality risk starts increasing
critical_age = 75 # age at and beyond which mortality risk reaches maximum
critical_mortality_chance = 0.1 # maximum mortality risk for older age
treatment_dependent_risk = True # whether risk is affected by treatment
# whether risk between risk and critical age increases 'linear' or 'quadratic'
risk_increase = "quadratic"
no_treatment_factor = 3 # risk increase factor to use if healthcare system is full
######################################
##### END OF SETTABLE PARAMETERS #####
######################################
# initalize population
population = initialize_population(pop_size, mean_age, max_age, xbounds,
ybounds)
population[:,
13] = wander_range_x # set wander ranges to default specified value
population[:,
14] = wander_range_y # set wander ranges to default specified value
# initialize destination matrix
destinations = initialize_destination_matrix(pop_size, 1)
# create render folder if doesn't exist
if not os.path.exists("render/"):
os.makedirs("render/")
# define figure
fig = plt.figure(figsize=(5, 7))
spec = fig.add_gridspec(ncols=1, nrows=2, height_ratios=[5, 2])
# Load dataset
df = pd.read_csv(args.d + "/" + args.d + ".data", header=None)
# One-hot-encode attributes if tic-tac-toe dataset
if args.d == "tic-tac-toe":
df = pd.get_dummies(df,
columns=list(df.columns.values)[:-1],
drop_first=True)
# Removing & appending label column at the end and renaming the columns
col_9 = df.pop(9)
df[9] = col_9
df.columns = list(range(len(df.columns.values)))
# Initialize population: returns list of individuals
program_list = population.initialize_population(
df, operators_mapping, args.p)
# Run GP
generation.run_each_generation(program_list, args.g, df, args.gap,
args.tdp, MAX_PROGRAM_SIZE, args.d,
NUMBER_OF_REGISTERS, vr_obj)
print('Overall time: ' +
str(round(timeit.default_timer() - overall_start, 3)) +
' seconds.\n')
except Exception as err:
print("Unexpected problem encountered: \n", str(err))
traceback.print_exc()
age_dependent_risk = True #whether risk increases with age
risk_age = 55 #age where mortality risk starts increasing
critical_age = 75 #age at and beyond which mortality risk reaches maximum
critical_mortality_chance = 0.1 #maximum mortality risk for older age
treatment_dependent_risk = True #whether risk is affected by treatment
#whether risk between risk and critical age increases 'linear' or 'quadratic'
risk_increase = 'quadratic'
no_treatment_factor = 3 #risk increase factor to use if healthcare system is full
######################################
##### END OF SETTABLE PARAMETERS #####
######################################
#initalize population
population = initialize_population(pop_size,
xbounds=xbounds,
ybounds=ybounds)
population[:,
13] = wander_range_x #set wander ranges to default specified value
population[:,
14] = wander_range_y #set wander ranges to default specified value
#initialize destination matrix
destinations = initialize_destination_matrix(pop_size, 1)
#place hospital on map x(-2, -1.5) y(-0.5, 0.5)
#put hospital workers (first 50?) in their own bounds
#population[0:healthcare_workers], \
#destinations[0:healthcare_workers] = set_destination_bounds(population[0:healthcare_workers],
# destinations[0:healthcare_workers],