def test_votes_normalization():
'''
Tests if min-max normalization of votes works.
Note that in a scale of 0-1 the value 0.775 has to be 0.5 (if the initial range is 0.55-1).
'''
prot1 = core.Protein(symbol="PROTEIN'\"",
positions=[1],
sentence=core.Sentence("This is a sentence"))
prot2 = core.Protein(symbol="PROTEIN2'\"",
positions=[2],
sentence=core.Sentence("This is a sentence"))
int_candidate = core.InteractionCandidate(prot1, prot2)
int_candidate.votes = 0.775
int_candidate._InteractionCandidate__normalize_pred()
assert (0.5 == int_candidate.votes)
def test_disambiguate():
'''
Tests disambuation of protein symbols
'''
prot = core.Protein(symbol="PROTEIN'\"",
positions=[1],
sentence=core.Sentence("This is a sentence"))
assert (prot.disambiguate() == "PROTEIN")
def test_disambiguation_negative():
'''
Tests a incorrect disambiguation
'''
protname = "tHISISNOTAKNOWNPROTEIn"
protein = core.Protein(symbol=protname,
positions=[1, 2],
sentence="placeholder")
disamb = protein.disambiguate()
assert (disamb == "THISISNOTAKNOWNPROTEIN")
def test_disambiguation_positive():
'''
Tests a correct disambiguation
'''
protname = "albumin"
protein = core.Protein(symbol=protname,
positions=[1, 2],
sentence="placeholder")
disamb = protein.disambiguate()
assert (disamb == "ALB")