def multires_inference(runs_dirpath, ori_image, ori_metadata,
ori_disp_polygons, model_disp_max_abs_value, batch_size,
ds_fac_list, run_name_list):
"""
Returns the last segmentation image that was computed (from the finest resolution)
:param ori_image:
:param ori_metadata:
:param ori_disp_polygons:
:param model_disp_max_abs_value:
:param ds_fac_list:
:param run_name_list:
:return:
"""
aligned_disp_polygons = ori_disp_polygons # init
segmentation_image = None
# Launch the resolution chain pipeline:
for index, (ds_fac, run_name) in enumerate(zip(ds_fac_list,
run_name_list)):
print("# --- downsampling_factor: {} --- #".format(ds_fac))
try:
aligned_disp_polygons, segmentation_image = inference(
runs_dirpath, ori_image, ori_metadata, aligned_disp_polygons,
model_disp_max_abs_value, batch_size, ds_fac, run_name)
except ValueError as e:
print_utils.print_warning(str(e))
return aligned_disp_polygons, segmentation_image
def read_image(filepath, pixelsize=None):
image_array = skimage.io.imread(filepath)
if pixelsize is None:
pixelsize = geo_utils.get_pixelsize(filepath)
assert type(
pixelsize) == float, "pixelsize should be float, not {}".format(
type(pixelsize))
if pixelsize < 1e-3:
print_utils.print_warning(
"WARNING: pixel size of image is detected to be {}m which seems very small to be correct. "
"If problems occur specify pixelsize with the pixelsize command-line argument"
.format(pixelsize))
image_metadata = {
"filepath": filepath,
"pixelsize": pixelsize,
}
return image_array, image_metadata
def load_config(config_name="config", config_dirpath=""):
config_filepath = os.path.join(config_dirpath, config_name + ".json")
try:
with open(config_filepath, 'r') as f:
minified = jsmin(f.read())
config = json.loads(minified)
return config
except FileNotFoundError:
if config_name == "config" and config_dirpath == "":
print_utils.print_warning(
"WARNING: the default config file was not found....")
return None
else:
print_utils.print_warning(
"WARNING: config file {} was not found, opening default config file config.json instead."
.format(config_filepath))
return load_config()
def get_polygons_from_shapefile(image_filepath, input_shapefile_filepath):
coor, gt, coor_system = get_coor_in_space(image_filepath)
transform_mat = compute_epsg_to_image_mat(coor, gt)
file = ogr.Open(input_shapefile_filepath)
assert file is not None, "File {} does not exist!".format(
input_shapefile_filepath)
shape = file.GetLayer(0)
feature_count = shape.GetFeatureCount()
polygons = []
properties_list = []
for feature_index in range(feature_count):
feature = shape.GetFeature(feature_index)
raw_json = feature.ExportToJson()
parsed_json = json.loads(raw_json)
# Extract polygon:
polygon = np.array(parsed_json["geometry"]["coordinates"][0])
assert len(polygon.shape) == 2, "polygon should have shape (n, d)"
if 2 < polygon.shape[1]:
print_utils.print_warning(
"WARNING: polygon from shapefile has shape {}. Will discard extra values to have polygon with shape ({}, 2)"
.format(polygon.shape, polygon.shape[0]))
polygon = polygon[:, :2]
polygon_epsg_space = polygon
polygon_image_space = apply_transform_mat(polygon_epsg_space,
transform_mat)
polygon_image_space = polygon_utils.swap_coords(polygon_image_space)
polygons.append(polygon_image_space)
# Extract properties:
if "properties" in parsed_json:
properties = parsed_json["properties"]
properties_list.append(properties)
if properties_list:
return polygons, properties_list
else:
return polygons
def process_dataset(dataset_fold, dataset_raw_dirpath,
image_info_list, overwrite_polygon_dir_name, patch_stride, patch_res,
data_aug_rot,
downsampling_factors,
disp_max_abs_value):
print("Processing images from {}".format(dataset_raw_dirpath))
for image_index, image_info in enumerate(image_info_list):
print("Processing city {}. Progression: {}/{}"
.format(image_info["city"], image_index + 1, len(image_info_list)))
if "number" in image_info:
# This is one image
tile_info_list = [image_info]
elif "numbers" in image_info:
# This is multiple images
tile_info_list = [
{
"city": image_info["city"],
"number": number,
"min_downsampling_factor": image_info["min_downsampling_factor"],
}
for number in image_info["numbers"]
]
else:
print_utils.print_warning(
"WARNING: image_info dict should have one of those keys: \"number\" or \"numbers\"")
tile_info_list = []
for tile_info in tile_info_list:
image_name = read.IMAGE_NAME_FORMAT.format(city=tile_info["city"], number=tile_info["number"])
print("Processing city {}, number {}"
.format(tile_info["city"], tile_info["number"]))
include_polygons = (dataset_fold == "val" or dataset_fold == "test")
if data_aug_rot and dataset_fold == "train":
# Account for data augmentation when rotating patches on the training set
adjusted_patch_res = math.ceil(patch_res * math.sqrt(2))
adjusted_patch_stride = math.floor(
patch_stride * math.sqrt(
2) / 2) # Divided by 2 so that no pixels are left out when rotating by 45 degrees
else:
adjusted_patch_res = patch_res
adjusted_patch_stride = patch_stride
# Filter out downsampling_factors that are lower than city_min_downsampling_factor
image_downsampling_factors = [downsampling_factor for downsampling_factor in downsampling_factors if
tile_info["min_downsampling_factor"] <= downsampling_factor]
# Create writers
writers = {}
for downsampling_factor in downsampling_factors:
filename_format = os.path.join(config.TFRECORDS_DIR,
config.TFRECORD_FILEPATH_FORMAT.format(dataset_fold, image_name,
downsampling_factor))
shard_writer = dataset_utils.TFRecordShardWriter(filename_format, config.RECORDS_PER_SHARD)
writers[downsampling_factor] = shard_writer
process_image(dataset_raw_dirpath, tile_info, overwrite_polygon_dir_name,
adjusted_patch_stride, adjusted_patch_res,
image_downsampling_factors,
disp_max_abs_value,
include_polygons,
writers)
# Close writers
for downsampling_factor in downsampling_factors:
writers[downsampling_factor].close()
