def _createActions(self, parentWidget):
"""
Define flyout toolbar actions for this mode.
"""
_superclass._createActions(self, parentWidget)
#Urmi 20080814: show this flyout toolbar only when rosetta plugin path
# is there
#Probably only rosetta_enabled_prefs_key check would have sufficed
plugin_name = "ROSETTA"
plugin_prefs_keys = (rosetta_enabled_prefs_key, rosetta_path_prefs_key)
errorcode, errortext_or_path = \
checkPluginPreferences(plugin_name, plugin_prefs_keys, ask_for_help = False)
#print "Error code =", errorcode, errortext_or_path
if errorcode == 0:
self.rosetta_enabled = True
else:
self.rosetta_enabled = False
# The subControlActionGroup is the parent of all flyout QActions.
self.subControlActionGroup = QActionGroup(parentWidget)
# Shouldn't the parent be self.win?
# Isn't parentWidget = BuildProteinPropertyManager?
# Ask Bruce about this. --Mark 2008-12-07.
self.subControlActionGroup.setExclusive(True)
self.modelProteinAction = \
NE1_QWidgetAction(self.subControlActionGroup, win = self.win)
self.modelProteinAction.setText("Model")
self.modelProteinAction.setIcon(geticon(
'ui/actions/Command Toolbar/BuildProtein/ModelProtein.png'))
self.modelProteinAction.setCheckable(True)
self.modelProteinAction.setChecked(True)
self.modelProteinAction.setObjectName('ACTION_MODEL_PROTEINS')
self.simulateProteinAction = \
NE1_QWidgetAction(self.subControlActionGroup, win = self.win)
self.simulateProteinAction.setText("Simulate")
self.simulateProteinAction.setIcon(geticon(
"ui/actions/Command Toolbar/BuildProtein/Simulate.png"))
self.simulateProteinAction.setCheckable(True)
self.simulateProteinAction.setObjectName('ACTION_SIMULATE_PROTEINS')
self.subControlActionGroup.addAction(self.modelProteinAction)
self.subControlActionGroup.addAction(self.simulateProteinAction)
self._createModelProteinsActions(parentWidget)
self._createSimulateProteinsActions(parentWidget)
def getExecutablePluginPath(self):
plugin_name = "ROSETTA"
plugin_prefs_keys = (rosetta_enabled_prefs_key, rosetta_path_prefs_key)
errorcode, errortext_or_path = \
checkPluginPreferences(plugin_name, plugin_prefs_keys)
if errorcode:
msg = redmsg("Verify Plugin: %s (code %d)" % (errortext_or_path, errorcode))
env.history.message(msg)
return None
program_path = errortext_or_path
return program_path
def getDatabasePluginPath(self):
plugin_name = "ROSETTA_DATABASE"
#Urmi 20080710: using the same code as exectuables. Its kind of bad
# but probably ok before RosettaCon
plugin_prefs_keys = (rosetta_database_enabled_prefs_key, rosetta_dbdir_prefs_key)
errorcode, errortext_or_path = \
checkPluginPreferences(plugin_name, plugin_prefs_keys)
if errorcode:
msg = redmsg("Verify Plugin: %s (code %d)" % (errortext_or_path, errorcode))
env.history.message(msg)
return None
dataBase_path = errortext_or_path
return dataBase_path
def testRosettaAndUpdateCommandToolbar(self, action):
if action == self.simulateProteinAction:
if not self.rosetta_enabled:
#print "Rosetta is not enabled"
plugin_name = "ROSETTA"
plugin_prefs_keys = (rosetta_enabled_prefs_key, rosetta_path_prefs_key)
errorcode, errortext_or_path = \
checkPluginPreferences(plugin_name, plugin_prefs_keys, ask_for_help = True)
#print "Error code =", errorcode, errortext_or_path
if errorcode == 0:
self.rosetta_enabled = True
else:
self.rosetta_enabled = False
self.modelProteinAction.setChecked(True)
self.simulateProteinAction.setChecked(False)
return
self.updateCommandToolbar()
def launch_qutemol(pdb_file):
"""
Launch and load QuteMolX with the PDB file I{pdb_file}.
@param pdb_file: the PDB filename to load
@type pdb_file: string
@return: (errorcode, errortext)
where errorcode is one of the following: ###k
0 = successful
8 = QuteMolX failed for an unknown reason.
@rtype: int, text
"""
plugin_name = "QuteMolX"
plugin_prefs_keys = (qutemol_enabled_prefs_key, qutemol_path_prefs_key)
errorcode, errortext_or_path = \
checkPluginPreferences(plugin_name, plugin_prefs_keys,
insure_executable = True)
if errorcode:
return errorcode, errortext_or_path
program_path = errortext_or_path
workdir, junk_exe = os.path.split(program_path)
# This provides a way to tell NE1 which version of QuteMolX is installed.
if debug_pref("QuteMol 0.4.1 or later",
Choice_boolean_True,
prefs_key = True):
version = "0.4.1"
else:
version = "0.4.0"
# Start QuteMolX.
try:
args = [pdb_file]
if env.debug():
print "Debug: Launching", plugin_name, \
"\n working directory=", workdir, \
"\n program_path=", program_path, \
"\n args are %r" % (args,)
arguments = QStringList()
for arg in args:
if arg != "":
arguments.append(arg)
p = Process()
# QuteMolX must run from the directory its executable lives. Otherwise,
# it has serious problems (but still runs). Mark 2007-06-02.
p.setWorkingDirectory(QString(workdir))
# Tried p.startDetached() so that QuteMolX would be its own process and
# continue to live even if NE1 exits. Unfortunately,
# setWorkingDirectory() doesn't work. Seems like a Qt bug to me.
# Mark 2007-06-02
p.start(program_path, arguments)
except:
print_compact_traceback( "exception in launch_qutemol(): " )
return 8, "%s failed for an unknown reason." % plugin_name
# set an appropriate exitcode and msg
if p.exitStatus() == QProcess.NormalExit:
exitcode = p.exitStatus()
if not exitcode:
msg = plugin_name + " launched."
else:
msg = plugin_name + " had exitcode %r" % exitcode
else:
exitcode = p.exitStatus()
exitcode = -1
msg = "Abnormal exit (or failure to launch)"
if exitcode:
return 8, "Error: " + msg
# this breaks the convention of the other error returns
return 0, plugin_name + " launched." # from launch_qutemol
def launch_qutemol(pdb_file):
"""
Launch and load QuteMolX with the PDB file I{pdb_file}.
@param pdb_file: the PDB filename to load
@type pdb_file: string
@return: (errorcode, errortext)
where errorcode is one of the following: ###k
0 = successful
8 = QuteMolX failed for an unknown reason.
@rtype: int, text
"""
plugin_name = "QuteMolX"
plugin_prefs_keys = (qutemol_enabled_prefs_key, qutemol_path_prefs_key)
errorcode, errortext_or_path = \
checkPluginPreferences(plugin_name, plugin_prefs_keys,
insure_executable = True)
if errorcode:
return errorcode, errortext_or_path
program_path = errortext_or_path
workdir, junk_exe = os.path.split(program_path)
# This provides a way to tell NE1 which version of QuteMolX is installed.
if debug_pref("QuteMol 0.4.1 or later",
Choice_boolean_True,
prefs_key=True):
version = "0.4.1"
else:
version = "0.4.0"
# Start QuteMolX.
try:
args = [pdb_file]
if env.debug():
print "Debug: Launching", plugin_name, \
"\n working directory=", workdir, \
"\n program_path=", program_path, \
"\n args are %r" % (args,)
arguments = QStringList()
for arg in args:
if arg != "":
arguments.append(arg)
p = Process()
# QuteMolX must run from the directory its executable lives. Otherwise,
# it has serious problems (but still runs). Mark 2007-06-02.
p.setWorkingDirectory(QString(workdir))
# Tried p.startDetached() so that QuteMolX would be its own process and
# continue to live even if NE1 exits. Unfortunately,
# setWorkingDirectory() doesn't work. Seems like a Qt bug to me.
# Mark 2007-06-02
p.start(program_path, arguments)
except:
print_compact_traceback("exception in launch_qutemol(): ")
return 8, "%s failed for an unknown reason." % plugin_name
# set an appropriate exitcode and msg
if p.exitStatus() == QProcess.NormalExit:
exitcode = p.exitStatus()
if not exitcode:
msg = plugin_name + " launched."
else:
msg = plugin_name + " had exitcode %r" % exitcode
else:
exitcode = p.exitStatus()
exitcode = -1
msg = "Abnormal exit (or failure to launch)"
if exitcode:
return 8, "Error: " + msg
# this breaks the convention of the other error returns
return 0, plugin_name + " launched." # from launch_qutemol
