def process_xml(xml_string):
tp = TripsProcessor(xml_string)
tp.get_complexes()
tp.get_phosphorylation()
tp.get_activating_mods()
tp.get_activations()
return tp
def process_xml(xml_string):
"""Return a TripsProcessor by processing a TRIPS EKB XML string.
Parameters
----------
xml_string : str
A TRIPS extraction knowledge base (EKB) string to be processed.
http://trips.ihmc.us/parser/api.html
Returns
-------
tp : TripsProcessor
A TripsProcessor containing the extracted INDRA Statements
in tp.statements.
"""
tp = TripsProcessor(xml_string)
if tp.tree is None:
return None
tp.get_complexes()
tp.get_phosphorylation()
tp.get_activating_mods()
tp.get_activations()
tp.get_activations_causal()
return tp