def calculateOCCStep(self, iterN, isLastIterStep):
imgSet = self._getInputParticles()
numberOfClasses = self.numberOfRef
cpusRef = self._cpusPerClass(self.numberOfBlocks, numberOfClasses)
iterDir = self._iterWorkingDir(iterN)
if iterN == 1 and not isLastIterStep:
ProtFrealignBase._mergeAllParFiles(self, iterN, self.numberOfBlocks)
parFile = self._getBaseName('output_par', iter=iterN)
samplingRate = imgSet.getSamplingRate()
rootFn = self._getBaseName('output_par_class_tmp', iter=iterN)
args = self._rsampleCommand()
program = RSAMPLE_PATH
else:
args = self._occCommand()
tmp = ''
for ref in self._allRefs():
if not isLastIterStep:
self._mergeAllParFiles(iterN, ref, self.cpuList[ref-1])
args += '%s\n' % self._getBaseName('output_par_class', iter=iterN, ref=ref)
tmp += '%s\n' % self._getBaseName('output_par_class', iter=iterN, ref=ref)
args = args + tmp + 'eot'
program = CALC_OCC_PATH
self.runJob(program, args % locals(), cwd=iterDir)
if isLastIterStep:
self._setLastIter(iterN)
def calculateOCCStep(self, iterN, isLastIterStep):
imgSet = self._getInputParticles()
numberOfClasses = self.numberOfRef
cpusRef = self._cpusPerClass(self.numberOfBlocks, numberOfClasses)
iterDir = self._iterWorkingDir(iterN)
if iterN == 1 and not isLastIterStep:
ProtFrealignBase._mergeAllParFiles(self, iterN,
self.numberOfBlocks)
parFile = self._getBaseName('output_par', iter=iterN)
samplingRate = imgSet.getSamplingRate()
rootFn = self._getBaseName('output_par_class_tmp', iter=iterN)
args = self._rsampleCommand()
program = RSAMPLE_PATH
else:
args = self._occCommand()
tmp = ''
for ref in self._allRefs():
if not isLastIterStep:
self._mergeAllParFiles(iterN, ref, self.cpuList[ref - 1])
args += '%s\n' % self._getBaseName(
'output_par_class', iter=iterN, ref=ref)
tmp += '%s\n' % self._getBaseName(
'output_par_class', iter=iterN, ref=ref)
args = args + tmp + 'eot'
program = CALC_OCC_PATH
self.runJob(program, args % locals(), cwd=iterDir)
if isLastIterStep:
self._setLastIter(iterN)
def _validate(self):
errors = ProtFrealignBase._validate(self)
if self.numberOfClasses.get() <= 1:
errors.append('The number of classes must be at least 2')
return errors
def _validate(self):
errors = ProtFrealignBase._validate(self)
if self.numberOfClasses.get() <= 1:
errors.append('The number of classes must be at least 2')
return errors
def __init__(self, **args):
ProtFrealignBase.__init__(self, **args)
def __init__(self, **args):
ProtFrealignBase.__init__(self, **args)
