def test_reaction_translated_compounds(self):
r = Reaction(Direction.Forward, [(Compound('Pb'), 1)],
[(Compound('Au'), 1)])
rt = r.translated_compounds(lambda name: name.lower())
self.assertEqual(
rt, Reaction(Direction.Forward, [(Compound('pb'), 1)],
[(Compound('au'), 1)]))
def test_reaction_translated_compounds(self):
r = Reaction(Direction.Forward, [(Compound('Pb'), 1)],
[(Compound('Au'), 1)])
rt = r.translated_compounds(lambda name: name.lower())
self.assertEqual(
rt, Reaction(Direction.Forward, [(Compound('pb'), 1)],
[(Compound('au'), 1)]))
if cpd not in wp2_structure:
no_structure = 1
if no_structure == 0:
lhs = []
rhs = []
for i in rx_original.left:
cpd = i[0].name
if cpd != 'C00080':
lhs.append(i)
for j in rx_original.right:
cpd = j[0].name
if cpd != 'C00080':
rhs.append(j)
no_h_rxn = Reaction(Direction.Both, lhs, rhs)
rx = str(no_h_rxn.translated_compounds(compound_name))
# rx = str(no_h_rxn)
rx_trans_string_no_comp = rx.replace('C00080[', '[')
for comp in nm.compartments:
rx_trans_string_no_comp = rx_trans_string_no_comp.replace(
'[%s]' % comp.id, '')
rx_trans_string_no_comp = rx_trans_string_no_comp.replace('(', '')
rx_trans_string_no_comp = rx_trans_string_no_comp.replace(')', '')
rx_trans_string_no_comp = rx_trans_string_no_comp.replace(
'<=>', '=')
rx_trans_string_no_comp = rx_trans_string_no_comp.replace(
'=>', '=')
rxn_list.append(rx_trans_string_no_comp)
rxn_dict[rx_trans_string_no_comp] = rxn
else:
