def create_W_pics(self,
it=None,
comm=MPI.COMM_WORLD,
out_path=None,
comp_rate=1,
filenames=[]):
""" Creates sequence of images from W.
Requires None or list. If *it*=None creates pictures of all GF
saved at folder *.../h5file* (-.h5). If *it*=list checks for lenght.
Lenght == 1 : saves this iteration number. If length == 2, first <
second, saves pictures in this interval. *comp_rate*, integer that allows
to plot ONLY each comp_rate*i (i integer) field.
"""
if 'W' in self.variables:
W = self.h5file.root.W[:]
num_W, H, D = W.shape
D2 = np.int(np.sqrt(D))
if D2**2 != D: #We correct for channel splitting
D2 = np.int(np.sqrt(D // 2))
D = D2**2
temp_W = W.reshape(num_W, H, 2 * D2, D2)
W = (temp_W[:, :, 0:D2, :] -
temp_W[:, :, D2:2 * D2, :]).reshape(num_W, H, D)
del temp_W
if it == None:
iter_list = xrange(num_W) #Print_all case
#In all the rest of the cases it should be a list
elif it.__class__ != [].__class__:
raise TypeError("Input should be a list")
else: #Print a specific number
if len(it) == 1: iter_list = it
elif len(it) == 2:
if it[0] >= it[1]:
print '\n\n OK, nothing will be printed \n\n'
iter_list = xrange(it[0], it[1])
else:
raise ValueError("list should contain 1 or 2 elements!")
if out_path == None: out_dir = self.h5file.filename[0:-3]
else: out_dir = out_path
if comm.rank == 0:
mkdir(out_dir) #The path is only generated at processor 0
fields = range(0, H, comp_rate)
if len(iter_list) != len(filenames):
for indW in iter_list:
save_path = out_dir + '/W_' + iter_to_str(indW + 1,
num_W) + '.png'
self.create_W_pic(W[indW, :, :], save_path, fields)
else:
num_order = 0
for indW in iter_list:
save_path = out_dir + filenames[num_order]
self.create_W_pic(W[indW, :, :], save_path, fields)
num_order += 1
def create_W_pics(self, it=None, comm=MPI.COMM_WORLD, out_path=None, comp_rate=1, filenames=[]):
""" Creates sequence of images from W.
Requires None or list. If *it*=None creates pictures of all GF
saved at folder *.../h5file* (-.h5). If *it*=list checks for lenght.
Lenght == 1 : saves this iteration number. If length == 2, first <
second, saves pictures in this interval. *comp_rate*, integer that allows
to plot ONLY each comp_rate*i (i integer) field.
"""
if 'W' in self.variables:
W = self.h5file.root.W[:]
num_W, H, D = W.shape
D2 = np.int(np.sqrt(D))
if D2**2 != D: #We correct for channel splitting
D2 = np.int(np.sqrt(D//2))
D = D2**2
temp_W = W.reshape(num_W, H, 2*D2, D2)
W = (temp_W[:, :, 0:D2, :] - temp_W[:, :, D2:2*D2, :]).reshape(num_W, H, D)
del temp_W
if it == None: iter_list = xrange(num_W) #Print_all case
#In all the rest of the cases it should be a list
elif it.__class__ != [].__class__: raise TypeError("Input should be a list")
else: #Print a specific number
if len(it) == 1: iter_list = it
elif len(it) == 2:
if it[0] >= it[1]: print '\n\n OK, nothing will be printed \n\n'
iter_list = xrange(it[0], it[1])
else: raise ValueError("list should contain 1 or 2 elements!")
if out_path == None: out_dir = self.h5file.filename[0:-3]
else: out_dir = out_path
if comm.rank == 0: mkdir(out_dir) #The path is only generated at processor 0
fields = range(0, H, comp_rate)
if len(iter_list) != len(filenames):
for indW in iter_list:
save_path = out_dir + '/W_' + iter_to_str(indW+1, num_W) + '.png'
self.create_W_pic(W[indW, :,:], save_path, fields)
else:
num_order = 0
for indW in iter_list:
save_path = out_dir + filenames[num_order]
self.create_W_pic(W[indW, :,:], save_path, fields)
num_order +=1
def create_W_pics(self, iteration=None, destination=''):
""" Creates the pictures of the W matrices. If an iteration is given, only that very iteration
is saved into the same folder as the h5-file.
If no iteration is given, a subfolder names as the h5-file is created and all the W pics
are saved in there. (Notice the difference to DataPlotter here.)
"""
if 'W' in self.variables:
W = self.h5file.root.W[:]
num_of_W, H, D = W.shape
if iteration >= num_of_W:
raise ValueError("Given iteration is too large.")
out_dir = self.h5file.filename[0:-3].split('/')[-1]
if iteration == None:
D2 = np.sqrt(D)
rows = int(np.ceil(sqrt(H)))
cols = int(np.round(sqrt(H)))
pyplot.figure(1113)
mkdir(out_dir)
for indW in xrange(num_of_W):
W_tmp = W[indW, :, :]
for ind_plot in xrange(H):
spl = pl.subplot(rows, cols, ind_plot + 1)
spl.cla()
spl.imshow(W_tmp[ind_plot].reshape(D2, D2),
interpolation='nearest',
cmap=pyplot.cm.jet)
pyplot.axis('off')
pl.savefig(destination + out_dir + '/W_' +
iter_to_str(indW + 1, num_of_W) + '.png')
else:
W = W[iteration, :, :]
D2 = np.sqrt(D)
rows = int(np.ceil(sqrt(H)))
cols = rows
pyplot.figure(1113)
for ind_plot in xrange(H):
spl = pl.subplot(rows, cols, ind_plot + 1)
spl.cla()
spl.imshow(W[ind_plot].reshape(D2, D2),
interpolation='nearest',
cmap=pyplot.cm.jet)
pyplot.axis('off')
pl.savefig(destination + 'W_' + out_dir + '_iter_' +
np.str(iteration + 1) + '.png')