def test_build_no_hash(archive_dir: LocalPath, cache_file: LocalPath):
assert not os.path.exists(cache_file)
assert syphon.__main__.main(_init_args(archive_dir)) == 0
assert syphon.__main__.main(_archive_args(archive_dir)) == 0
arguments = _build_args(archive_dir, cache_file)
arguments.append("--no-hash")
assert syphon.__main__.main(arguments) == 0
assert os.path.exists(cache_file)
assert not os.path.exists(
cache_file.dirpath(syphon.core.check.DEFAULT_FILE))
assert cache_file.size() > 0
def assert_post_hash(
post_hash: bool,
cache_file: LocalPath,
hash_filepath: Optional[LocalPath],
verbose: bool = False,
):
import syphon.core.check
resolved_hashfile = (cache_file.dirpath(syphon.core.check.DEFAULT_FILE)
if hash_filepath is None else hash_filepath)
if post_hash:
assert syphon.core.check.check(cache_file,
hash_filepath=resolved_hashfile,
verbose=verbose)
else:
assert not os.path.exists(resolved_hashfile)
def test_only_update_hash_file_when_post_hash_true(
capsys: CaptureFixture,
archive_dir: LocalPath,
cache_file: LocalPath,
hash_file: Optional[LocalPath],
verbose: bool,
):
datafile: str = os.path.join(get_data_path(), "iris.csv")
assert syphon.archive(archive_dir, [datafile])
assert not os.path.exists(os.path.join(get_data_path(), "#lock"))
cache_file.write(rand_string())
resolved_hashfile = (cache_file.dirpath(syphon.core.check.DEFAULT_FILE)
if hash_file is None else hash_file)
pathlib.Path(resolved_hashfile).touch()
with syphon.hash.HashFile(resolved_hashfile) as hashfile:
hashfile.update(syphon.hash.HashEntry(cache_file))
assert syphon.check(cache_file, hash_filepath=resolved_hashfile)
assert syphon.build(
cache_file,
*get_data_files(archive_dir),
hash_filepath=hash_file,
incremental=False,
overwrite=True,
post_hash=False,
verbose=verbose,
)
assert_captured_outerr(capsys.readouterr(), verbose, False)
assert not syphon.check(cache_file, hash_filepath=resolved_hashfile)
assert syphon.build(
cache_file,
*get_data_files(archive_dir),
hash_filepath=hash_file,
incremental=False,
overwrite=True,
post_hash=True,
verbose=verbose,
)
assert_captured_outerr(capsys.readouterr(), verbose, False)
assert syphon.check(cache_file, hash_filepath=resolved_hashfile)
def test_build(
archive_dir: LocalPath,
cache_file: LocalPath,
hash_file: LocalPath,
specify_hashfile: bool,
):
assert not os.path.exists(cache_file)
assert syphon.__main__.main(_init_args(archive_dir)) == 0
assert syphon.__main__.main(_archive_args(archive_dir)) == 0
arguments = _build_args(archive_dir, cache_file)
if specify_hashfile:
arguments.append(str(hash_file))
assert syphon.__main__.main(arguments) == 0
assert os.path.exists(cache_file)
assert os.path.exists(hash_file if specify_hashfile else cache_file.
dirpath(syphon.core.check.DEFAULT_FILE))
# If we're using our own hash file, then the default should not be created.
if specify_hashfile:
assert not os.path.exists(
cache_file.dirpath(syphon.core.check.DEFAULT_FILE))
assert cache_file.size() > 0
def schema_file(request: FixtureRequest, archive_dir: LocalPath) -> Optional[LocalPath]:
return None if request.param else archive_dir.dirpath("schemafile")
def test_incremental_maintains_data_fidelity_when_new_data_new_and_missing_columns(
capsys: CaptureFixture,
archive_dir: LocalPath,
import_dir: LocalPath,
cache_file: LocalPath,
hash_file: Optional[LocalPath],
verbose: bool,
):
"""Incremental build maintains data fidelity when new data
* has columns not present in the existing data cache.
* is missing columns found in the existing data cache.
"""
pre_datafiles: List[str] = [
os.path.join(get_data_path(),
"iris_plus_partial-1-of-2-no-species.csv")
]
datafiles: List[str] = [
os.path.join(get_data_path(),
"iris_plus_partial-2-of-2-no-petalcolor.csv")
]
resolved_hashfile = (cache_file.dirpath(syphon.core.check.DEFAULT_FILE)
if hash_file is None else hash_file)
assert syphon.archive(archive_dir, pre_datafiles)
assert not os.path.exists(os.path.join(get_data_path(), "#lock"))
# Pre-build
assert syphon.build(
cache_file,
*get_data_files(archive_dir),
hash_filepath=hash_file,
incremental=False,
overwrite=False,
post_hash=True,
verbose=False,
)
# Get the hash of the cache file before our main build.
pre_cache_hash: str = syphon.hash.HashEntry(cache_file).hash
# Get the hash of the hash file for easy file change checking.
pre_hash_hash: str = syphon.hash.HashEntry(resolved_hashfile).hash
# Main build
assert syphon.build(
cache_file,
*datafiles,
hash_filepath=hash_file,
incremental=True,
overwrite=True,
post_hash=True,
verbose=verbose,
)
assert_captured_outerr(capsys.readouterr(), verbose, False)
post_cache_hash: str = syphon.hash.HashEntry(cache_file).hash
post_hash_hash: str = syphon.hash.HashEntry(resolved_hashfile).hash
expected_frame = DataFrame(
read_csv(
os.path.join(
get_data_path(),
"iris_plus_partial-new-data-new-and-missing-columns.csv",
),
dtype=str,
index_col="Index",
))
expected_frame.sort_index(inplace=True)
assert pre_cache_hash != post_cache_hash
assert pre_hash_hash != post_hash_hash
with syphon.hash.HashFile(resolved_hashfile) as hashfile:
for entry in hashfile:
if os.path.samefile(entry.filepath, str(cache_file)):
assert post_cache_hash == entry.hash
actual_frame = DataFrame(
read_csv(cache_file, dtype=str, index_col="Index"))
actual_frame.sort_index(inplace=True)
assert_frame_equal(expected_frame, actual_frame, check_exact=True)