def print_point_statistics(data,
models,
externalmodels=None,
externalforecasts=None,
indexers=None):
ret = "Model & Order & RMSE & SMAPE & Theil's U \\\\ \n"
for count, model in enumerate(models, start=0):
_rmse, _smape, _u = Measures.get_point_statistics(
data, model, indexers)
ret += model.shortname + " & "
ret += str(model.order) + " & "
ret += str(_rmse) + " & "
ret += str(_smape) + " & "
ret += str(_u)
#ret += str(round(Measures.TheilsInequality(np.array(data[fts.order:]), np.array(forecasts[:-1])), 4))
ret += " \\\\ \n"
if externalmodels is not None:
l = len(externalmodels)
for k in np.arange(0, l):
ret += externalmodels[k] + " & "
ret += " 1 & "
ret += str(round(Measures.rmse(data, externalforecasts[k][:-1]),
2)) + " & "
ret += str(
round(Measures.smape(data, externalforecasts[k][:-1]),
2)) + " & "
ret += str(
round(Measures.UStatistic(data, externalforecasts[k][:-1]), 2))
ret += " \\\\ \n"
print(ret)
def forecast_params(data, train_split, method, params, plot=False):
train, test = sampling.train_test_split(data, train_split)
fcst = method(train, test, params)
_output = params['output']
_step = params.get('step', 1)
_offset = params['order'] + _step - 1
yobs = test[_output].iloc[_offset:].values
if plot:
plt.figure(figsize=(20, 10))
plt.plot(yobs)
plt.plot(fcst)
plt.show()
rmse = Measures.rmse(yobs, fcst)
print("RMSE: ", rmse)
nrmse = metrics.normalized_rmse(yobs, fcst)
print("nRMSE: ", nrmse)
smape = Measures.smape(yobs, fcst)
print("SMAPE: ", smape)
u = Measures.UStatistic(yobs, fcst)
print("U Statistic: ", u)
return rmse, nrmse, smape, u
def print_point_statistics(data, models, externalmodels = None, externalforecasts = None, indexers=None):
"""
Run point benchmarks on given models and data and print the results
:param data: test data
:param models: a list of FTS models to benchmark
:param externalmodels: a list with benchmark models (façades for other methods)
:param externalforecasts:
:param indexers:
:return:
"""
ret = "Model & Order & RMSE & SMAPE & Theil's U \\\\ \n"
for count,model in enumerate(models,start=0):
_rmse, _smape, _u = Measures.get_point_statistics(data, model, indexers)
ret += model.shortname + " & "
ret += str(model.order) + " & "
ret += str(_rmse) + " & "
ret += str(_smape)+ " & "
ret += str(_u)
#ret += str(round(Measures.TheilsInequality(np.array(data[fts.order:]), np.array(forecasts[:-1])), 4))
ret += " \\\\ \n"
if externalmodels is not None:
l = len(externalmodels)
for k in np.arange(0,l):
ret += externalmodels[k] + " & "
ret += " 1 & "
ret += str(round(Measures.rmse(data, externalforecasts[k][:-1]), 2)) + " & "
ret += str(round(Measures.smape(data, externalforecasts[k][:-1]), 2))+ " & "
ret += str(round(Measures.UStatistic(data, externalforecasts[k][:-1]), 2))
ret += " \\\\ \n"
print(ret)
def compareModelsTable(original, models_fo, models_ho):
fig = plt.figure(figsize=[12, 4])
fig.suptitle("Comparação de modelos ")
columns = ['Modelo', 'Ordem', 'Partições', 'RMSE', 'MAPE (%)']
rows = []
for model in models_fo:
fts = model["model"]
error_r = Measures.rmse(model["forecasted"], original)
error_m = round(Measures.mape(model["forecasted"], original) * 100, 2)
rows.append(
[model["name"], fts.order,
len(fts.sets), error_r, error_m])
for model in models_ho:
fts = model["model"]
error_r = Measures.rmse(model["forecasted"][fts.order:],
original[fts.order:])
error_m = round(
Measures.mape(model["forecasted"][fts.order:],
original[fts.order:]) * 100, 2)
rows.append(
[model["name"], fts.order,
len(fts.sets), error_r, error_m])
ax1 = fig.add_axes([0, 0, 1, 1]) # left, bottom, width, height
ax1.set_xticks([])
ax1.set_yticks([])
ax1.table(cellText=rows,
colLabels=columns,
cellLoc='center',
bbox=[0, 0, 1, 1])
sup = "\\begin{tabular}{"
header = ""
body = ""
footer = ""
for c in columns:
sup = sup + "|c"
if len(header) > 0:
header = header + " & "
header = header + "\\textbf{" + c + "} "
sup = sup + "|} \\hline\n"
header = header + "\\\\ \\hline \n"
for r in rows:
lin = ""
for c in r:
if len(lin) > 0:
lin = lin + " & "
lin = lin + str(c)
body = body + lin + "\\\\ \\hline \n"
return sup + header + body + "\\end{tabular}"
def cluster_method(individual, train, test):
from pyFTS.common import Util, Membership
from pyFTS.models import hofts
from pyFTS.partitioners import Grid, Entropy
from pyFTS.benchmarks import Measures
if individual['mf'] == 1:
mf = Membership.trimf
elif individual['mf'] == 2:
mf = Membership.trapmf
elif individual['mf'] == 3 and individual['partitioner'] != 2:
mf = Membership.gaussmf
else:
mf = Membership.trimf
if individual['partitioner'] == 1:
partitioner = Grid.GridPartitioner(data=train, npart=individual['npart'], func=mf)
elif individual['partitioner'] == 2:
npart = individual['npart'] if individual['npart'] > 10 else 10
partitioner = Entropy.EntropyPartitioner(data=train, npart=npart, func=mf)
model = hofts.WeightedHighOrderFTS(partitioner=partitioner,
lags=individual['lags'],
alpha_cut=individual['alpha'],
order=individual['order'])
model.fit(train)
rmse, mape, u = Measures.get_point_statistics(test, model)
size = len(model)
return individual, rmse, size, mape, u
def cluster_method(individual, dataset, **kwargs):
from pyFTS.common import Util, Membership
from pyFTS.models import hofts
from pyFTS.partitioners import Grid, Entropy
from pyFTS.benchmarks import Measures
import numpy as np
if individual['mf'] == 1:
mf = Membership.trimf
elif individual['mf'] == 2:
mf = Membership.trapmf
elif individual['mf'] == 3 and individual['partitioner'] != 2:
mf = Membership.gaussmf
else:
mf = Membership.trimf
window_size = kwargs.get('window_size', 800)
train_rate = kwargs.get('train_rate', .8)
increment_rate = kwargs.get('increment_rate', .2)
parameters = kwargs.get('parameters', {})
errors = []
sizes = []
for count, train, test in Util.sliding_window(dataset,
window_size,
train=train_rate,
inc=increment_rate):
if individual['partitioner'] == 1:
partitioner = Grid.GridPartitioner(data=train,
npart=individual['npart'],
func=mf)
elif individual['partitioner'] == 2:
npart = individual['npart'] if individual['npart'] > 10 else 10
partitioner = Entropy.EntropyPartitioner(data=train,
npart=npart,
func=mf)
model = hofts.WeightedHighOrderFTS(partitioner=partitioner,
lags=individual['lags'],
alpha_cut=individual['alpha'],
order=individual['order'])
model.fit(train)
forecasts = model.predict(test)
#rmse, mape, u = Measures.get_point_statistics(test, model)
rmse = Measures.rmse(test[model.max_lag:], forecasts)
size = len(model)
errors.append(rmse)
sizes.append(size)
return {
'parameters': individual,
'rmse': np.nanmean(errors),
'size': np.nanmean(size)
}
def evaluation1(dataset, individual):
from pyFTS.common import Util
from pyFTS.benchmarks import Measures
try:
results = []
lengths = []
for count, train, test in Util.sliding_window(dataset,
800,
train=.8,
inc=.25):
model = phenotype(individual, train)
if model is None:
return (None)
rmse, _, _ = Measures.get_point_statistics(test, model)
lengths.append(len(model))
results.append(rmse)
_lags = sum(model.lags) * 100
rmse = np.nansum(
[.6 * np.nanmean(results), .4 * np.nanstd(results)])
len_lags = np.nansum([.4 * np.nanmean(lengths), .6 * _lags])
return len_lags, rmse
except Exception as ex:
print("EXCEPTION!", str(ex), str(individual))
return np.inf
def forecast_best_params(data,
train_split,
method_id,
method,
space,
plot=False,
save=False):
print("Running experiment ", method_id)
best = pickle.load(open("best_" + method_id + ".pkl", "rb"))
train, test = sampling.train_test_split(data, train_split)
best_params = space_eval(space, best)
fcst = method(train, test, best_params)
_order = best_params['order']
_output = best_params['output']
yobs = test[_output].iloc[_order:].values
if plot:
plt.figure(figsize=(20, 10))
plt.plot(yobs)
plt.plot(fcst)
plt.show()
rmse = Measures.rmse(yobs, fcst)
print("RMSE: ", rmse)
nrmse = metrics.normalized_rmse(yobs, fcst)
print("nRMSE: ", nrmse)
smape = Measures.smape(yobs, fcst)
print("SMAPE: ", smape)
u = Measures.UStatistic(yobs, fcst)
print("U Statistic: ", u)
if save:
results = {
"method_id": method_id,
"forecast": fcst,
"RMSE": rmse,
"SMAPE": smape,
"U": u
}
pickle.dump(results, open("results_" + method_id + ".pkl", "wb"))
return rmse, nrmse, smape, u
def run_interval(mfts, partitioner, train_data, test_data, window_key=None, **kwargs):
"""
Run the interval forecasting benchmarks
:param mfts: FTS model
:param partitioner: Universe of Discourse partitioner
:param train_data: data used to train the model
:param test_data: ata used to test the model
:param window_key: id of the sliding window
:param transformation: data transformation
:param indexer: seasonal indexer
:return: a dictionary with the benchmark results
"""
import time
from pyFTS.models import hofts,ifts,pwfts
from pyFTS.partitioners import Grid, Entropy, FCM
from pyFTS.benchmarks import Measures, arima, quantreg
tmp = [hofts.HighOrderFTS, ifts.IntervalFTS, pwfts.ProbabilisticWeightedFTS]
tmp2 = [Grid.GridPartitioner, Entropy.EntropyPartitioner, FCM.FCMPartitioner]
tmp4 = [arima.ARIMA, quantreg.QuantileRegression]
tmp3 = [Measures.get_interval_statistics]
steps_ahead = kwargs.get('steps_ahead', 1)
method = kwargs.get('method', None)
if mfts.benchmark_only:
_key = mfts.shortname + str(mfts.order if mfts.order is not None else "") + str(mfts.alpha)
else:
pttr = str(partitioner.__module__).split('.')[-1]
_key = mfts.shortname + " n = " + str(mfts.order) + " " + pttr + " q = " + str(partitioner.partitions)
mfts.partitioner = partitioner
mfts.append_transformation(partitioner.transformation)
_key += str(steps_ahead)
_key += str(method) if method is not None else ""
_start = time.time()
mfts.fit(train_data, **kwargs)
_end = time.time()
times = _end - _start
_start = time.time()
#_sharp, _res, _cov, _q05, _q25, _q75, _q95, _w05, _w25
metrics = Measures.get_interval_statistics(test_data, mfts, **kwargs)
_end = time.time()
times += _end - _start
ret = {'key': _key, 'obj': mfts, 'sharpness': metrics[0], 'resolution': metrics[1], 'coverage': metrics[2],
'time': times,'Q05': metrics[3], 'Q25': metrics[4], 'Q75': metrics[5], 'Q95': metrics[6],
'winkler05': metrics[7], 'winkler25': metrics[8],
'window': window_key,'steps': steps_ahead, 'method': method}
return ret
def evaluate(dataset, individual, **kwargs):
"""
Evaluate an individual using a sliding window cross validation over the dataset.
:param dataset: Evaluation dataset
:param individual: genotype to be tested
:param window_size: The length of scrolling window for train/test on dataset
:param train_rate: The train/test split ([0,1])
:param increment_rate: The increment of the scrolling window, relative to the window_size ([0,1])
:param parameters: dict with model specific arguments for fit method.
:return: a tuple (len_lags, rmse) with the parsimony fitness value and the accuracy fitness value
"""
from pyFTS.models import hofts, ifts, pwfts
from pyFTS.common import Util
from pyFTS.benchmarks import Measures
from pyFTS.hyperparam.Evolutionary import phenotype, __measures
import numpy as np
window_size = kwargs.get('window_size', 800)
train_rate = kwargs.get('train_rate', .8)
increment_rate = kwargs.get('increment_rate', .2)
fts_method = kwargs.get('fts_method', hofts.WeightedHighOrderFTS)
parameters = kwargs.get('parameters', {})
if individual['f1'] is not None and individual['f2'] is not None:
return {key: individual[key] for key in __measures}
errors = []
lengths = []
for count, train, test in Util.sliding_window(dataset,
window_size,
train=train_rate,
inc=increment_rate):
model = phenotype(individual,
train,
fts_method=fts_method,
parameters=parameters)
forecasts = model.predict(test)
rmse = Measures.rmse(test[model.max_lag:], forecasts[:-1])
lengths.append(len(model))
errors.append(rmse)
_lags = sum(model.lags) * 100
_rmse = np.nanmean(errors)
_len = np.nanmean(lengths)
f1 = np.nansum([.6 * _rmse, .4 * np.nanstd(errors)])
f2 = np.nansum([.4 * _len, .6 * _lags])
return {'f1': f1, 'f2': f2, 'rmse': _rmse, 'size': _len}
def evaluate_individual_model(model, partitioner, train, test, window_size, time_displacement):
import numpy as np
from pyFTS.partitioners import Grid
from pyFTS.benchmarks import Measures
try:
model.train(train, sets=partitioner.sets, order=model.order, parameters=window_size)
forecasts = model.forecast(test, time_displacement=time_displacement, window_size=window_size)
_rmse = Measures.rmse(test[model.order:], forecasts[:-1])
_mape = Measures.mape(test[model.order:], forecasts[:-1])
_u = Measures.UStatistic(test[model.order:], forecasts[:-1])
except Exception as e:
print(e)
_rmse = np.nan
_mape = np.nan
_u = np.nan
return {'model': model.shortname, 'partitions': partitioner.partitions, 'order': model.order,
'rmse': _rmse, 'mape': _mape, 'u': _u}
def print_distribution_statistics(original, models, steps, resolution):
ret = "Model & Order & Interval & Distribution \\\\ \n"
for fts in models:
_crps1, _crps2, _t1, _t2 = Measures.get_distribution_statistics(
original, fts, steps, resolution)
ret += fts.shortname + " & "
ret += str(fts.order) + " & "
ret += str(_crps1) + " & "
ret += str(_crps2) + " \\\\ \n"
print(ret)
def rolling_window_forecast_params(data, train_percent, window_size, method,
params):
# get training days
training_days = pd.unique(data.index.date)
fcst = []
yobs = []
for day in training_days:
print("Processing :", day)
daily_data = data[data.index.date == day]
nsamples = len(daily_data.index)
train_size = round(nsamples * train_percent)
test_end = 0
index = 0
while test_end < nsamples:
train_start, train_end, test_start, test_end = get_data_index(
index, train_size, window_size, nsamples)
train = data[train_start:train_end]
test = data[test_start:test_end]
index += window_size
f = method(train, test, params)
fcst.extend(f)
_step = params.get('step', 1)
_output = params['output']
_offset = params['order'] + _step - 1
yobs.extend(test[_output].iloc[_offset:].values)
rmse = Measures.rmse(yobs, fcst)
print("RMSE: ", rmse)
nrmse = metrics.normalized_rmse(yobs, fcst)
print("nRMSE: ", nrmse)
smape = Measures.smape(yobs, fcst)
print("SMAPE: ", smape)
u = Measures.UStatistic(yobs, fcst)
print("U Statistic: ", u)
return rmse, nrmse, smape, u
def evaluate(dataset, individual, **kwargs):
"""
Evaluate an individual using a sliding window cross validation over the dataset.
:param dataset: Evaluation dataset
:param individual: genotype to be tested
:param window_size: The length of scrolling window for train/test on dataset
:param train_rate: The train/test split ([0,1])
:param increment_rate: The increment of the scrolling window, relative to the window_size ([0,1])
:param parameters: dict with model specific arguments for fit method.
:return: a tuple (len_lags, rmse) with the parsimony fitness value and the accuracy fitness value
"""
from pyFTS.common import Util
from pyFTS.benchmarks import Measures
from pyFTS.fcm.GA import phenotype
import numpy as np
window_size = kwargs.get('window_size', 800)
train_rate = kwargs.get('train_rate', .8)
increment_rate = kwargs.get('increment_rate', .2)
#parameters = kwargs.get('parameters',{})
errors = []
for count, train, test in Util.sliding_window(dataset,
window_size,
train=train_rate,
inc=increment_rate):
model = phenotype(individual, train)
if model is None:
raise Exception("Phenotype returned None")
model.uod_clip = False
forecasts = model.predict(test)
rmse = Measures.rmse(
test[model.max_lag:],
forecasts[:-1]) #.get_point_statistics(test, model)
errors.append(rmse)
_rmse = np.nanmean(errors)
_std = np.nanstd(errors)
#print("EVALUATION {}".format(individual))
return {'rmse': .6 * _rmse + .4 * _std}
def print_interval_statistics(original, models):
ret = "Model & Order & Sharpness & Resolution & Coverage & .05 & .25 & .75 & .95 \\\\ \n"
for fts in models:
_sharp, _res, _cov, _q5, _q25, _q75, _q95 = Measures.get_interval_statistics(
original, fts)
ret += fts.shortname + " & "
ret += str(fts.order) + " & "
ret += str(_sharp) + " & "
ret += str(_res) + " & "
ret += str(_cov) + " &"
ret += str(_q5) + " &"
ret += str(_q25) + " &"
ret += str(_q75) + " &"
ret += str(_q95) + "\\\\ \n"
print(ret)
def compare_residuals(data, models):
"""
Compare residual's statistics of several models
:param data: test data
:param models:
:return:
"""
ret = "Model & Order & Mean & STD & Box-Pierce & Box-Ljung & P-value \\\\ \n"
for mfts in models:
forecasts = mfts.forecast(data)
res = residuals(data, forecasts, mfts.order)
mu = np.mean(res)
sig = np.std(res)
ret += mfts.shortname + " & "
ret += str(mfts.order) + " & "
ret += str(round(mu, 2)) + " & "
ret += str(round(sig, 2)) + " & "
q1 = Measures.BoxPierceStatistic(res, 10)
ret += str(round(q1, 2)) + " & "
q2 = Measures.BoxLjungStatistic(res, 10)
ret += str(round(q2, 2)) + " & "
ret += str(chi_squared(q2, 10))
ret += " \\\\ \n"
return ret
def print_distribution_statistics(original, models, steps, resolution):
"""
Run probabilistic benchmarks on given models and data and print the results
:param data: test data
:param models: a list of FTS models to benchmark
:return:
"""
ret = "Model & Order & Interval & Distribution \\\\ \n"
for fts in models:
_crps1, _crps2, _t1, _t2 = Measures.get_distribution_statistics(original, fts, steps, resolution)
ret += fts.shortname + " & "
ret += str(fts.order) + " & "
ret += str(_crps1) + " & "
ret += str(_crps2) + " \\\\ \n"
print(ret)
def print_interval_statistics(original, models):
"""
Run interval benchmarks on given models and data and print the results
:param data: test data
:param models: a list of FTS models to benchmark
:return:
"""
ret = "Model & Order & Sharpness & Resolution & Coverage & .05 & .25 & .75 & .95 \\\\ \n"
for fts in models:
_sharp, _res, _cov, _q5, _q25, _q75, _q95 = Measures.get_interval_statistics(original, fts)
ret += fts.shortname + " & "
ret += str(fts.order) + " & "
ret += str(_sharp) + " & "
ret += str(_res) + " & "
ret += str(_cov) + " &"
ret += str(_q5) + " &"
ret += str(_q25) + " &"
ret += str(_q75) + " &"
ret += str(_q95) + "\\\\ \n"
print(ret)
def rolling_window_benchmark(data, train=0.8, **kwargs):
resample = __pop('resample', None, kwargs)
output = __pop('output', None, kwargs)
if resample:
data = sampling.resample_data(data, resample)
train_data, test_data = sampling.train_test_split(data, train)
methods = __pop('methods', None, kwargs)
orders = __pop("orders", [1, 2, 3], kwargs)
steps_ahead = __pop('steps_ahead', [1], kwargs)
for method in methods:
for order in orders:
for step in steps_ahead:
m = method()
if isinstance(m, fts.FTS):
partitioners = __pop("partitioners",
[Grid.GridPartitioner], kwargs)
partitions = __pop("partitions", [10], kwargs)
for partitioner in partitioners:
for partition in partitions:
data_train_fs = partitioner(data=train_data,
npart=partition)
m.partitioner = data_train_fs
# medir tempo de treinamento
m.fit(train_data, **kwargs)
# medir tempo de forecast
yhat = m.predict()
#_start = time.time()
# implementar metricas de avaliacao
_rmse = Measures.rmse(test_data[output].iloc[order:],
yhat[:-step])
print("RMSE: ", _rmse)
from pyFTS.benchmarks import Measures
from pyFTS.partitioners import Grid, Entropy
from pyFTS.models import hofts
from pyFTS.common import Membership
x = [k for k in np.arange(-2 * np.pi, 2 * np.pi, 0.1)]
y = [np.sin(k) for k in x]
rows = []
fig, ax = plt.subplots(nrows=1, ncols=1, figsize=[15, 5])
ax.plot(y, label='Original', color='black')
for npart in np.arange(5, 35, 5):
part = Grid.GridPartitioner(data=y, npart=npart)
model = hofts.HighOrderFTS(order=1, partitioner=part)
model.fit(y)
forecasts = model.predict(y)
ax.plot(forecasts[:-1], label=str(npart) + " partitions")
rmse, mape, u = Measures.get_point_statistics(y, model)
rows.append([npart, rmse, mape, u])
handles, labels = ax.get_legend_handles_labels()
lgd = ax.legend(handles, labels, loc=2, bbox_to_anchor=(1, 1))
df = pd.DataFrame(rows, columns=['Partitions', 'RMSE', 'MAPE', 'U'])
def normalized_rmse(targets, forecasts):
if isinstance(targets, list):
targets = np.array(targets)
return Measures.rmse(targets, forecasts) / np.nanmean(targets)
def evaluate(dataset, individual, **kwargs):
"""
Evaluate an individual using a sliding window cross validation over the dataset.
:param dataset: Evaluation dataset
:param individual: genotype to be tested
:param window_size: The length of scrolling window for train/test on dataset
:param train_rate: The train/test split ([0,1])
:param increment_rate: The increment of the scrolling window, relative to the window_size ([0,1])
:param parameters: dict with model specific arguments for fit method.
:return: a tuple (len_lags, rmse) with the parsimony fitness value and the accuracy fitness value
"""
import logging
from pyFTS.models import hofts, ifts, pwfts
from pyFTS.common import Util
from pyFTS.benchmarks import Measures
from pyFTS.hyperparam.Evolutionary import __measures
from pyFTS.hyperparam.mvfts import phenotype
from pyFTS.models.multivariate import mvfts, wmvfts, partitioner, variable, cmvfts, grid, granular, common
import numpy as np
window_size = kwargs.get('window_size', 800)
train_rate = kwargs.get('train_rate', .8)
increment_rate = kwargs.get('increment_rate', .2)
fts_method = kwargs.get('fts_method', wmvfts.WeightedMVFTS)
parameters = kwargs.get('parameters', {})
tvar = kwargs.get('target_variable', None)
if individual['f1'] is not None and individual['f2'] is not None:
return {key: individual[key] for key in __measures}
errors = []
lengths = []
kwargs2 = kwargs.copy()
kwargs2.pop('fts_method')
if 'parameters' in kwargs2:
kwargs2.pop('parameters')
for count, train, test in Util.sliding_window(dataset,
window_size,
train=train_rate,
inc=increment_rate):
try:
model = phenotype(individual,
train,
fts_method=fts_method,
parameters=parameters,
**kwargs2)
forecasts = model.predict(test)
rmse = Measures.rmse(
test[tvar['data_label']].values[model.max_lag:],
forecasts[:-1])
lengths.append(len(model))
errors.append(rmse)
except Exception as ex:
logging.exception("Error")
lengths.append(np.nan)
errors.append(np.nan)
try:
_rmse = np.nanmean(errors)
_len = np.nanmean(lengths)
f1 = np.nansum([.6 * _rmse, .4 * np.nanstd(errors)])
f2 = np.nansum([.9 * _len, .1 * np.nanstd(lengths)])
return {'f1': f1, 'f2': f2, 'rmse': _rmse, 'size': _len}
except Exception as ex:
logging.exception("Error")
return {'f1': np.inf, 'f2': np.inf, 'rmse': np.inf, 'size': np.inf}
from pyFTS.data import TAIEX, SP500, NASDAQ, Malaysia
dataset = Malaysia.get_data('temperature')[:1000]
p = Grid.GridPartitioner(data=dataset, npart=20)
print(p)
model = hofts.WeightedHighOrderFTS(partitioner=p, order=2)
model.fit(dataset) #[22, 22, 23, 23, 24])
print(model)
Measures.get_point_statistics(dataset, model)
'''
#dataset = SP500.get_data()[11500:16000]
#dataset = NASDAQ.get_data()
#print(len(dataset))
bchmk.sliding_window_benchmarks(dataset, 1000, train=0.8, inc=0.2,
methods=[chen.ConventionalFTS], #[pwfts.ProbabilisticWeightedFTS],
benchmark_models=False,
transformations=[None],
#orders=[1, 2, 3],
partitions=np.arange(10, 100, 2),
progress=False, type="point",
#steps_ahead=[1,2,4,6,8,10],
distributed=False, nodes=['192.168.0.110', '192.168.0.107', '192.168.0.106'],
def run_probabilistic(mfts,
partitioner,
train_data,
test_data,
window_key=None,
**kwargs):
"""
Probabilistic forecast benchmark function to be executed on cluster nodes
:param mfts: FTS model
:param partitioner: Universe of Discourse partitioner
:param train_data: data used to train the model
:param test_data: ata used to test the model
:param steps:
:param resolution:
:param window_key: id of the sliding window
:param transformation: data transformation
:param indexer: seasonal indexer
:return: a dictionary with the benchmark results
"""
import time
import numpy as np
from pyFTS.models import hofts, ifts, pwfts
from pyFTS.models.ensemble import ensemble
from pyFTS.partitioners import Grid, Entropy, FCM
from pyFTS.benchmarks import Measures, arima, quantreg, knn
from pyFTS.models.seasonal import SeasonalIndexer
tmp = [
hofts.HighOrderFTS, ifts.IntervalFTS, pwfts.ProbabilisticWeightedFTS,
arima.ARIMA, ensemble.AllMethodEnsembleFTS, knn.KNearestNeighbors
]
tmp2 = [
Grid.GridPartitioner, Entropy.EntropyPartitioner, FCM.FCMPartitioner
]
tmp3 = [
Measures.get_distribution_statistics, SeasonalIndexer.SeasonalIndexer,
SeasonalIndexer.LinearSeasonalIndexer
]
indexer = kwargs.get('indexer', None)
steps_ahead = kwargs.get('steps_ahead', 1)
method = kwargs.get('method', None)
if mfts.benchmark_only:
_key = mfts.shortname + str(
mfts.order if mfts.order is not None else "") + str(mfts.alpha)
else:
pttr = str(partitioner.__module__).split('.')[-1]
_key = mfts.shortname + " n = " + str(
mfts.order) + " " + pttr + " q = " + str(partitioner.partitions)
mfts.partitioner = partitioner
mfts.append_transformation(partitioner.transformation)
_key += str(steps_ahead)
_key += str(method) if method is not None else ""
if mfts.has_seasonality:
mfts.indexer = indexer
_start = time.time()
mfts.fit(train_data, **kwargs)
_end = time.time()
times = _end - _start
_crps1, _t1, _brier = Measures.get_distribution_statistics(
test_data, mfts, **kwargs)
_t1 += times
ret = {
'key': _key,
'obj': mfts,
'CRPS': _crps1,
'time': _t1,
'brier': _brier,
'window': window_key,
'steps': steps_ahead,
'method': method
}
return ret
def run_point(mfts,
partitioner,
train_data,
test_data,
window_key=None,
**kwargs):
"""
Point forecast benchmark function to be executed on cluster nodes
:param mfts: FTS model
:param partitioner: Universe of Discourse partitioner
:param train_data: data used to train the model
:param test_data: ata used to test the model
:param window_key: id of the sliding window
:param transformation: data transformation
:param indexer: seasonal indexer
:return: a dictionary with the benchmark results
"""
import time
from pyFTS.models import yu, chen, hofts, pwfts, ismailefendi, sadaei, song, cheng, hwang
from pyFTS.partitioners import Grid, Entropy, FCM
from pyFTS.benchmarks import Measures, naive, arima, quantreg
from pyFTS.common import Transformations
tmp = [
song.ConventionalFTS, chen.ConventionalFTS, yu.WeightedFTS,
ismailefendi.ImprovedWeightedFTS, cheng.TrendWeightedFTS,
sadaei.ExponentialyWeightedFTS, hofts.HighOrderFTS, hwang.HighOrderFTS,
pwfts.ProbabilisticWeightedFTS
]
tmp2 = [
Grid.GridPartitioner, Entropy.EntropyPartitioner, FCM.FCMPartitioner
]
tmp4 = [naive.Naive, arima.ARIMA, quantreg.QuantileRegression]
tmp3 = [Measures.get_point_statistics]
tmp5 = [Transformations.Differential]
indexer = kwargs.get('indexer', None)
steps_ahead = kwargs.get('steps_ahead', 1)
method = kwargs.get('method', None)
if mfts.benchmark_only:
_key = mfts.shortname + str(
mfts.order if mfts.order is not None else "")
else:
pttr = str(partitioner.__module__).split('.')[-1]
_key = mfts.shortname + " n = " + str(
mfts.order) + " " + pttr + " q = " + str(partitioner.partitions)
mfts.partitioner = partitioner
mfts.append_transformation(partitioner.transformation)
_key += str(steps_ahead)
_key += str(method) if method is not None else ""
_start = time.time()
mfts.fit(train_data, **kwargs)
_end = time.time()
times = _end - _start
_start = time.time()
_rmse, _smape, _u = Measures.get_point_statistics(test_data, mfts,
**kwargs)
_end = time.time()
times += _end - _start
ret = {
'key': _key,
'obj': mfts,
'rmse': _rmse,
'smape': _smape,
'u': _u,
'time': times,
'window': window_key,
'steps': steps_ahead,
'method': method
}
return ret
def simpleSearch_RMSE(train,
test,
model,
partitions,
orders,
save=False,
file=None,
tam=[10, 15],
plotforecasts=False,
elev=30,
azim=144,
intervals=False,
parameters=None,
partitioner=Grid.GridPartitioner,
transformation=None,
indexer=None):
_3d = len(orders) > 1
ret = []
if _3d:
errors = np.array([[0 for k in range(len(partitions))]
for kk in range(len(orders))])
else:
errors = []
forecasted_best = []
fig = plt.figure(figsize=tam)
# fig.suptitle("Comparação de modelos ")
if plotforecasts:
ax0 = fig.add_axes([0, 0.4, 0.9, 0.5]) # left, bottom, width, height
ax0.set_xlim([0, len(train)])
ax0.set_ylim([min(train) * 0.9, max(train) * 1.1])
ax0.set_title('Forecasts')
ax0.set_ylabel('F(T)')
ax0.set_xlabel('T')
min_rmse = 1000000.0
best = None
for pc, p in enumerate(partitions, start=0):
sets = partitioner(data=train, npart=p,
transformation=transformation).sets
for oc, o in enumerate(orders, start=0):
fts = model("q = " + str(p) + " n = " + str(o))
fts.append_transformation(transformation)
fts.train(train, sets=sets, order=o, parameters=parameters)
if not intervals:
forecasted = fts.forecast(test)
if not fts.has_seasonality:
error = Measures.rmse(np.array(test[o:]),
np.array(forecasted[:-1]))
else:
error = Measures.rmse(np.array(test[o:]),
np.array(forecasted))
for kk in range(o):
forecasted.insert(0, None)
if plotforecasts: ax0.plot(forecasted, label=fts.name)
else:
forecasted = fts.forecast_interval(test)
error = 1.0 - Measures.rmse_interval(np.array(test[o:]),
np.array(forecasted[:-1]))
if _3d:
errors[oc, pc] = error
else:
errors.append(error)
if error < min_rmse:
min_rmse = error
best = fts
forecasted_best = forecasted
# print(min_rmse)
if plotforecasts:
# handles0, labels0 = ax0.get_legend_handles_labels()
# ax0.legend(handles0, labels0)
ax0.plot(test, label="Original", linewidth=3.0, color="black")
if _3d: ax1 = Axes3D(fig, rect=[0, 1, 0.9, 0.9], elev=elev, azim=azim)
if _3d and not plotforecasts:
ax1 = Axes3D(fig, rect=[0, 1, 0.9, 0.9], elev=elev, azim=azim)
ax1.set_title('Error Surface')
ax1.set_ylabel('Model order')
ax1.set_xlabel('Number of partitions')
ax1.set_zlabel('RMSE')
X, Y = np.meshgrid(partitions, orders)
surf = ax1.plot_surface(X,
Y,
errors,
rstride=1,
cstride=1,
antialiased=True)
else:
ax1 = fig.add_axes([0, 1, 0.9, 0.9])
ax1.set_title('Error Curve')
ax1.set_xlabel('Number of partitions')
ax1.set_ylabel('RMSE')
ax1.plot(partitions, errors)
ret.append(best)
ret.append(forecasted_best)
ret.append(min_rmse)
# plt.tight_layout()
cUtil.show_and_save_image(fig, file, save)
return ret
df = loader.series_to_supervised(signals[key], n_in=_order, n_out=1)
data_input = df.iloc[:, :_order].values
data_output = df.iloc[:, -1].values
l = len(df.index)
limit = l // 2
train = data_input[:limit]
test = data_input[limit:]
ax[row].plot(data_output[limit + _order:], label="Original")
ax[row].set_title(key)
persistence_forecast = data_output[limit + _order - 1:-1]
ax[row].plot(persistence_forecast, label="Persistence")
_rmse = Measures.rmse(data_output[limit + _order:], persistence_forecast)
data = [key, "Persistence", _rmse]
evolving_model = evolvingclusterfts.EvolvingClusterFTS(
defuzzy='weighted', membership_threshold=0.6, variance_limit=0.001)
evolving_model.fit(train, order=_order)
y_hat_df = pd.DataFrame(evolving_model.predict(test))
forecasts = y_hat_df.iloc[:, -1].values
ax[row].plot(forecasts, label="EvolvingFTS")
_rmse = Measures.rmse(data_output[limit + _order:], forecasts[:-1])
data = [key, "EvolvingFTS", _rmse]
rows.append(data)
fbem_model = FBeM.FBeM()
fbem_model.n = _order
fbem_model.fit(train, order=_order)
def sliding_window_simple_search(data, windowsize, model, partitions, orders,
**kwargs):
_3d = len(orders) > 1
ret = []
errors = np.array([[0 for k in range(len(partitions))]
for kk in range(len(orders))])
forecasted_best = []
figsize = kwargs.get('figsize', [10, 15])
fig = plt.figure(figsize=figsize)
plotforecasts = kwargs.get('plotforecasts', False)
if plotforecasts:
ax0 = fig.add_axes([0, 0.4, 0.9, 0.5]) # left, bottom, width, height
ax0.set_xlim([0, len(data)])
ax0.set_ylim([min(data) * 0.9, max(data) * 1.1])
ax0.set_title('Forecasts')
ax0.set_ylabel('F(T)')
ax0.set_xlabel('T')
min_rmse = 1000000.0
best = None
intervals = kwargs.get('intervals', False)
threshold = kwargs.get('threshold', 0.5)
progressbar = kwargs.get('progressbar', None)
rng1 = enumerate(partitions, start=0)
if progressbar:
from tqdm import tqdm
rng1 = enumerate(tqdm(partitions), start=0)
for pc, p in rng1:
fs = Grid.GridPartitioner(data=data, npart=p)
rng2 = enumerate(orders, start=0)
if progressbar:
rng2 = enumerate(tqdm(orders), start=0)
for oc, o in rng2:
_error = []
for ct, train, test in Util.sliding_window(data, windowsize, 0.8,
**kwargs):
fts = model("q = " + str(p) + " n = " + str(o), partitioner=fs)
fts.fit(train, order=o)
if not intervals:
forecasted = fts.forecast(test)
if not fts.has_seasonality:
_error.append(
Measures.rmse(np.array(test[o:]),
np.array(forecasted[:-1])))
else:
_error.append(
Measures.rmse(np.array(test[o:]),
np.array(forecasted)))
for kk in range(o):
forecasted.insert(0, None)
if plotforecasts: ax0.plot(forecasted, label=fts.name)
else:
forecasted = fts.forecast_interval(test)
_error.append(1.0 - Measures.rmse_interval(
np.array(test[o:]), np.array(forecasted[:-1])))
error = np.nanmean(_error)
errors[oc, pc] = error
if (min_rmse - error) > threshold:
min_rmse = error
best = fts
forecasted_best = forecasted
# print(min_rmse)
if plotforecasts:
# handles0, labels0 = ax0.get_legend_handles_labels()
# ax0.legend(handles0, labels0)
elev = kwargs.get('elev', 30)
azim = kwargs.get('azim', 144)
ax0.plot(test, label="Original", linewidth=3.0, color="black")
if _3d: ax1 = Axes3D(fig, rect=[0, 1, 0.9, 0.9], elev=elev, azim=azim)
if not plotforecasts:
ax1 = Axes3D(fig, rect=[0, 1, 0.9, 0.9], elev=elev, azim=azim)
# ax1 = fig.add_axes([0.6, 0.5, 0.45, 0.45], projection='3d')
if _3d:
ax1.set_title('Error Surface')
ax1.set_ylabel('Model order')
ax1.set_xlabel('Number of partitions')
ax1.set_zlabel('RMSE')
X, Y = np.meshgrid(partitions, orders)
surf = ax1.plot_surface(X,
Y,
errors,
rstride=1,
cstride=1,
antialiased=True)
else:
ax1 = fig.add_axes([0, 1, 0.9, 0.9])
ax1.set_title('Error Curve')
ax1.set_ylabel('Number of partitions')
ax1.set_xlabel('RMSE')
ax0.plot(errors, partitions)
ret.append(best)
ret.append(forecasted_best)
# plt.tight_layout()
file = kwargs.get('file', None)
save = kwargs.get('save', False)
Util.show_and_save_image(fig, file, save)
return ret
def SelecaoSimples_MenorRMSE(original, parameters, modelo):
ret = []
errors = []
forecasted_best = []
print("Série Original")
fig = plt.figure(figsize=[20, 12])
fig.suptitle("Comparação de modelos ")
ax0 = fig.add_axes([0, 0.5, 0.65, 0.45]) # left, bottom, width, height
ax0.set_xlim([0, len(original)])
ax0.set_ylim([min(original), max(original)])
ax0.set_title('Série Temporal')
ax0.set_ylabel('F(T)')
ax0.set_xlabel('T')
ax0.plot(original, label="Original")
min_rmse = 100000.0
best = None
for p in parameters:
sets = Grid.GridPartitioner(data=original, npart=p).sets
fts = modelo(str(p) + " particoes")
fts.train(original, sets=sets)
# print(original)
forecasted = fts.forecast(original)
forecasted.insert(0, original[0])
# print(forecasted)
ax0.plot(forecasted, label=fts.name)
error = Measures.rmse(np.array(forecasted), np.array(original))
print(p, error)
errors.append(error)
if error < min_rmse:
min_rmse = error
best = fts
forecasted_best = forecasted
handles0, labels0 = ax0.get_legend_handles_labels()
ax0.legend(handles0, labels0)
ax1 = fig.add_axes([0.7, 0.5, 0.3, 0.45]) # left, bottom, width, height
ax1.set_title('Comparação dos Erros Quadráticos Médios')
ax1.set_ylabel('RMSE')
ax1.set_xlabel('Quantidade de Partições')
ax1.set_xlim([min(parameters), max(parameters)])
ax1.plot(parameters, errors)
ret.append(best)
ret.append(forecasted_best)
# Modelo diferencial
print("\nSérie Diferencial")
difffts = Transformations.differential(original)
errors = []
forecastedd_best = []
ax2 = fig.add_axes([0, 0, 0.65, 0.45]) # left, bottom, width, height
ax2.set_xlim([0, len(difffts)])
ax2.set_ylim([min(difffts), max(difffts)])
ax2.set_title('Série Temporal')
ax2.set_ylabel('F(T)')
ax2.set_xlabel('T')
ax2.plot(difffts, label="Original")
min_rmse = 100000.0
bestd = None
for p in parameters:
sets = Grid.GridPartitioner(data=difffts, npart=p)
fts = modelo(str(p) + " particoes")
fts.train(difffts, sets=sets)
forecasted = fts.forecast(difffts)
forecasted.insert(0, difffts[0])
ax2.plot(forecasted, label=fts.name)
error = Measures.rmse(np.array(forecasted), np.array(difffts))
print(p, error)
errors.append(error)
if error < min_rmse:
min_rmse = error
bestd = fts
forecastedd_best = forecasted
handles0, labels0 = ax2.get_legend_handles_labels()
ax2.legend(handles0, labels0)
ax3 = fig.add_axes([0.7, 0, 0.3, 0.45]) # left, bottom, width, height
ax3.set_title('Comparação dos Erros Quadráticos Médios')
ax3.set_ylabel('RMSE')
ax3.set_xlabel('Quantidade de Partições')
ax3.set_xlim([min(parameters), max(parameters)])
ax3.plot(parameters, errors)
ret.append(bestd)
ret.append(forecastedd_best)
return ret
model = method(**parameters[ct])
model.fit(train)
start = model.order + 1
end = start + horizon
intervals = model.predict(test[:10],
type='interval',
alpha=.25,
steps_ahead=horizon)
distributions = model.predict(test[:10],
type='distribution',
smooth='histogram',
steps_ahead=horizon,
num_bins=100)
print(
model.name,
Measures.get_interval_ahead_statistics(test[start:end], intervals))
print(
model.name,
Measures.get_distribution_ahead_statistics(test[start:end],
distributions))
print('end')
#f, ax = plt.subplots(1, 1, figsize=[20, 5])
#ax.plot(data)
#bchmk.plot_interval(ax, forecasts, 3, "")
#print(forecasts)
'''
mu_local = 5
sigma_local = 0.25
