def test__getitem__tuple(self, sim=sim):
p = sim.Population(23, sim.HH_cond_exp())
pv1 = p[1, 5, 6, 8, 11, 12, 15, 16, 19, 20]
pv2 = pv1[(3, 5, 7)]
self.assertEqual(pv2.parent, pv1)
assert_array_almost_equal(pv2.all_cells, p.all_cells[[8, 12, 16]])
def test__getitem__slice(self, sim=sim):
# Should return a PopulationView with the correct parent and value
# of all_cells
p = sim.Population(17, sim.HH_cond_exp())
pv = p[3:9]
self.assertEqual(pv.parent, p)
assert_array_almost_equal(pv.all_cells, p.all_cells[3:9])
def setUp(self):
sim.setup(num_processes=2, rank=1, min_delay=0.123)
self.p1 = sim.Population(4, sim.IF_cond_exp(), structure=space.Line())
self.p2 = sim.Population(5, sim.HH_cond_exp(), structure=space.Line())
assert_array_equal(self.p2._mask_local,
numpy.array([0, 1, 0, 1, 0], dtype=bool))
connection_list = [
(0, 0, 0.0, 1.0),
(3, 0, 0.0, 1.0),
(2, 3, 0.0, 1.0), # local
(2, 2, 0.0, 1.0),
(0, 1, 0.0, 1.0), # local
]
list_connector = connectors.FromListConnector(connection_list)
syn = sim.StaticSynapse()
self.ref_prj = sim.Projection(self.p1, self.p2, list_connector, syn)
self.orig_gather_dict = recording.gather_dict # create reference to original function
# The gather_dict function in recording needs to be temporarily replaced so it can work with
# a mock version of the function to avoid it throwing an mpi4py import error when setting
# the rank in pyNN.mock by hand to > 1
def mock_gather_dict(D, all=False):
return D
recording.gather_dict = mock_gather_dict
def setUp(self):
sim.setup(num_processes=2, rank=1, min_delay=0.123)
self.p1 = sim.Population(9, sim.IF_cond_exp(),
structure=space.Grid2D(aspect_ratio=1.0, dx=1.0, dy=1.0))
self.p2 = sim.Population(9, sim.HH_cond_exp(),
structure=space.Grid2D(aspect_ratio=1.0, dx=1.0, dy=1.0))
assert_array_equal(self.p2._mask_local, numpy.array([1,0,1,0,1,0,1,0,1], dtype=bool))
def setUp(self):
sim.setup(num_processes=2, rank=1, min_delay=0.123)
self.p1 = sim.Population(4, sim.IF_cond_exp(), structure=space.Line())
self.p2 = sim.Population(5, sim.HH_cond_exp(), structure=space.Line())
assert_array_equal(self.p2._mask_local, numpy.array([0,1,0,1,0], dtype=bool))
random.mpi_rank = 1
random.num_processes = 2
def test___add__three(self, sim=sim):
# adding three population views should give an Assembly
pv1 = sim.Population(6, sim.IF_curr_exp())[0:3]
pv2 = sim.Population(17, sim.IF_cond_exp())[1, 5, 14]
pv3 = sim.Population(9, sim.HH_cond_exp())[3:8]
assembly = pv1 + pv2 + pv3
self.assertIsInstance(assembly, sim.Assembly)
self.assertEqual(assembly.populations, [pv1, pv2, pv3])
def setUp(self, sim=sim, **extra):
sim.setup(num_processes=2, rank=1, min_delay=0.123, **extra)
self.p1 = sim.Population(4, sim.IF_cond_exp(), structure=space.Line())
self.p2 = sim.Population(5, sim.HH_cond_exp(), structure=space.Line())
assert_array_equal(self.p1._mask_local,
np.array([0, 1, 0, 1], dtype=bool))
assert_array_equal(self.p2._mask_local,
np.array([0, 1, 0, 1, 0], dtype=bool))
def test___add__three(self, sim=sim):
# adding three populations should give an Assembly
p1 = sim.Population(6, sim.IF_curr_exp())
p2 = sim.Population(17, sim.IF_cond_exp())
p3 = sim.Population(9, sim.HH_cond_exp())
assembly = p1 + p2 + p3
self.assertIsInstance(assembly, sim.Assembly)
self.assertEqual(assembly.populations, [p1, p2, p3])
def test_create_with_slice_selector(self, sim=sim):
p = sim.Population(11, sim.HH_cond_exp())
mask1 = slice(0, 9, 1)
pv1 = sim.PopulationView(parent=p, selector=mask1)
assert_array_equal(pv1.all_cells, p.all_cells[0:9])
mask2 = slice(3, 9, 2)
pv2 = sim.PopulationView(parent=pv1, selector=mask2)
self.assertEqual(pv2.parent, pv1) # or would it be better to resolve the parent chain up to an actual Population?
assert_array_equal(pv2.all_cells, numpy.array([p.all_cells[3], p.all_cells[5], p.all_cells[7]]))
def setUp(self, sim=sim, **extra):
sim.setup(min_delay=0.123, **extra)
self.p1 = sim.Population(4, sim.IF_cond_exp(), structure=space.Line())
self.p2 = sim.Population(5, sim.HH_cond_exp(), structure=space.Line())
self.connection_list = [
(0, 0, 0.1, 0.1),
(3, 0, 0.2, 0.11),
(2, 3, 0.3, 0.12), # local
(2, 2, 0.4, 0.13),
(0, 1, 0.5, 0.14), # local
]
def test__getitem__slice(self, sim=sim):
# Should return a PopulationView with the correct parent and value
# of all_cells
p = sim.Population(17, sim.HH_cond_exp())
pv1 = p[1, 5, 6, 8, 11, 12, 15, 16]
pv2 = pv1[2:6]
self.assertEqual(pv2.parent, pv1)
self.assertEqual(pv2.grandparent, p)
assert_array_equal(pv2.all_cells, pv1.all_cells[[2, 3, 4, 5]])
assert_array_equal(pv2.all_cells, p.all_cells[[6, 8, 11, 12]])
def setUp(self):
sim.setup(num_processes=2, rank=1, min_delay=0.123)
self.p1 = sim.Population(4, sim.IF_cond_exp(), structure=space.Line())
self.p2 = sim.Population(5, sim.HH_cond_exp(), structure=space.Line())
assert_array_equal(self.p2._mask_local, numpy.array([0,1,0,1,0], dtype=bool))
self.connection_list = [
(0, 0, 0.1, 0.1),
(3, 0, 0.2, 0.11),
(2, 3, 0.3, 0.12), # local
(2, 2, 0.4, 0.13),
(0, 1, 0.5, 0.14), # local
]
def setUp(self):
sim.setup(num_processes=2, rank=0)
self.p1 = sim.Population(5, sim.IF_cond_exp())
self.p2 = sim.Population(5, sim.HH_cond_exp())
assert_array_equal(self.p2._mask_local, numpy.array([0,1,0,1,0], dtype=bool))
def test_set_invalid_name(self, sim=sim):
p = sim.Population(9, sim.HH_cond_exp())
self.assertRaises(errors.NonExistentParameterError, p.set, foo=13.2)
def test__getitem__tuple(self, sim=sim):
p = sim.Population(23, sim.HH_cond_exp())
pv = p[(3, 5, 7)]
self.assertEqual(pv.parent, p)
assert_array_almost_equal(pv.all_cells, p.all_cells[[3, 5, 7]])
def test__getitem__list(self, sim=sim):
p = sim.Population(23, sim.HH_cond_exp())
pv = p[list(range(3, 9))]
self.assertEqual(pv.parent, p)
assert_array_almost_equal(pv.all_cells, p.all_cells[3:9])
def setUp(self, sim=sim, **extra):
sim.setup(nmin_delay=0.123, **extra)
self.p1 = sim.Population(5, sim.IF_cond_exp(), structure=space.Line())
self.p2 = sim.Population(5, sim.HH_cond_exp(), structure=space.Line())
def setUp(self, sim=sim, **extra):
sim.setup(**extra)
self.p1 = sim.Population(5, sim.IF_cond_exp())
self.p2 = sim.Population(5, sim.HH_cond_exp())