def test_valid_input(self):
self.assertAlmostEqual(affine('dva', 'deeva'), 1.5)
self.assertAlmostEqual(affine('dva', 'deeve', gap_start=2, gap_continuation=0.5), -0.5)
self.assertAlmostEqual(
affine('AAAGAATTCA', 'AAATCA', gap_continuation=0.2, sim_score=lambda s1, s2: (int(1 if s1 == s2 else 0))),
4.4)
self.assertAlmostEqual(
affine(' ', ' ', gap_continuation=0.2, sim_score=lambda s1, s2: (int(1 if s1 == s2 else 0))), 1)
def test_valid_input(self):
self.assertAlmostEqual(affine('dva', 'deeva'), 1.5)
self.assertAlmostEqual(
affine('dva', 'deeve', gap_start=2, gap_continuation=0.5), -0.5)
self.assertAlmostEqual(
affine('AAAGAATTCA',
'AAATCA',
gap_continuation=0.2,
sim_score=lambda s1, s2: (int(1 if s1 == s2 else 0))), 4.4)
self.assertAlmostEqual(
affine(' ',
' ',
gap_continuation=0.2,
sim_score=lambda s1, s2: (int(1 if s1 == s2 else 0))), 1)
def test_invalid_input3(self):
affine('MARHTA', 12.90)
def test_invalid_input2(self):
affine('MARHTA', None)
def test_invalid_input1(self):
affine(None, 'MARHTA')
def test_invalid_input5(self):
affine(None, None)
def test_invalid_input4(self):
affine(12.90, 'MARTHA')
def time_medium_medium(self):
simfunctions.affine(_medium_string_1, _medium_string_2)
def test_invalid_input2(self):
affine('MARHTA', None)
def test_invalid_input1(self):
affine(None, 'MARHTA')
def time_medium_long(self):
simfunctions.affine(_medium_string_1, _long_string_1)
def time_short_long(self):
simfunctions.affine(_short_string_1, _long_string_1)
def time_short_medium(self):
simfunctions.affine(_short_string_1, _medium_string_1)
def time_long_long(self):
simfunctions.affine(_long_string_1, _long_string_2)
def test_invalid_input4(self):
affine(12.90, 'MARTHA')
def test_invalid_input3(self):
affine('MARHTA', 12.90)
def test_invalid_input5(self):
affine(None, None)
def time_short_short(self):
simfunctions.affine(_short_string_1, _short_string_2)
