def __init__(self, id, session, managerlocation, **kwargs):
node.Node.__init__(self, id, session, managerlocation, **kwargs)
self.instrument = instrument.Proxy(self.objectservice, self.session,
self.panel)
self.calclients = ordereddict.OrderedDict()
self.calclients[
'image shift'] = calibrationclient.ImageShiftCalibrationClient(
self)
self.calclients[
'stage position'] = calibrationclient.StageCalibrationClient(self)
self.calclients[
'modeled stage position'] = calibrationclient.ModeledStageCalibrationClient(
self)
self.calclients[
'beam shift'] = calibrationclient.BeamShiftCalibrationClient(self)
self.calclients[
'image beam shift'] = calibrationclient.ImageBeamShiftCalibrationClient(
self)
self.pcal = calibrationclient.PixelSizeCalibrationClient(self)
self.presetsclient = presets.PresetsClient(self)
self.stagelocations = []
self.getLocationsFromDB()
self.correlator = correlator.Correlator()
self.peakfinder = peakfinder.PeakFinder()
self.oldimagedata = None
self.newimagedata = None
self.oldstate = None
self.newstate = None
self.addEventInput(event.MoveToTargetEvent, self.handleMoveEvent)
self.start()
def __init__(self, node, tilt_axis, correlation_binning=1, lpf=None):
self.correlation = correlator.Correlator()
self.peakfinder = peakfinder.PeakFinder(lpf)
self.node = node
self.tiltcorrector = leginon.tiltcorrector.VirtualStageTilter(
self.node)
self.reset()
self.setCorrelationBinning(correlation_binning)
self.hanning = None
self.channel = None
def __init__(self, id, session, managerlocation, **kwargs): self.correlator = correlator.Correlator() self.peakfinder = peakfinder.PeakFinder() self.settle = 5.0 self.threadstop = threading.Event() self.threadlock = threading.Lock() calibrator.Calibrator.__init__(self, id, session, managerlocation, **kwargs) self.calclient = calibrationclient.ModeledStageCalibrationClient(self) self.pcal = calibrationclient.PixelSizeCalibrationClient(self) self.corchannel = None self.axes = ['x', 'y'] self.start()
def __init__(self, id, session, managerlocation, **kwargs):
watchfor = [event.DriftMonitorRequestEvent]
watcher.Watcher.__init__(self, id, session, managerlocation, watchfor,
**kwargs)
self.correlator = correlator.Correlator()
self.peakfinder = peakfinder.PeakFinder()
self.instrument = instrument.Proxy(self.objectservice, self.session,
self.panel)
self.pixsizeclient = calibrationclient.PixelSizeCalibrationClient(self)
self.presetsclient = presets.PresetsClient(self)
self.abortevent = threading.Event()
self.start()
def __init__(self, id, session, managerlocation, **kwargs):
targetfinder.TargetFinder.__init__(self, id, session, managerlocation, **kwargs)
self.images = {
'original': None,
'templateA': None,
'templateB-unshifted': None,
'templateB': None,
'correlation': None,
}
self.cortypes = ['cross', 'phase']
self.userpause = threading.Event()
self.correlator = correlator.Correlator()
self.start()
def __init__(self, id, session, managerlocation, **kwargs):
node.Node.__init__(self, id, session, managerlocation, **kwargs)
TargetTransformer.__init__(self)
self.correlator = correlator.Correlator()
self.peakfinder = peakfinder.PeakFinder()
self.instrument = instrument.Proxy(self.objectservice, self.session,
self.panel)
self.calclients = ordereddict.OrderedDict()
self.calclients[
'image shift'] = calibrationclient.ImageShiftCalibrationClient(
self)
self.calclients[
'stage position'] = calibrationclient.StageCalibrationClient(self)
self.calclients[
'modeled stage position'] = calibrationclient.ModeledStageCalibrationClient(
self)
self.calclients[
'image beam shift'] = calibrationclient.ImageBeamShiftCalibrationClient(
self)
self.calclients[
'beam shift'] = calibrationclient.BeamShiftCalibrationClient(self)
self.pixsizeclient = calibrationclient.PixelSizeCalibrationClient(self)
self.presetsclient = presets.PresetsClient(self)
self.navclient = navigator.NavigatorClient(self)
self.target_to_transform = None
self.addEventInput(event.TransformTargetEvent,
self.handleTransformTargetEvent)
self.registrations = {
'correlation': transformregistration.CorrelationRegistration(self),
}
if not hide_incomplete:
self.registrations.update({
'keypoints':
transformregistration.KeyPointsRegistration(self),
'logpolar':
transformregistration.LogPolarRegistration(self),
'identity':
transformregistration.IdentityRegistration(self),
})
self.abortevent = threading.Event()
self.player = player.Player(callback=self.onPlayer)
self.panel.playerEvent(self.player.state())
self.start()
def __init__(self):
self.scale = 1.0
self.targetlist = []
self.correlator = correlator.Correlator()
self.peakfinder = peakfinder.PeakFinder()
self.tiles = []
self.positionmethods = {}
self.positionmethods['correlation'] = self.positionByCorrelation
self.positionmethods['automatic'] = self.automaticPosition
self.automaticpriority = ['correlation']
#self.positionmethod = self.positionmethods.keys()[0]
self.positionmethod = 'automatic'
def simpleCorrelation(array1, array2):
c = correlator.Correlator()
p = peakfinder.PeakFinder()
c.setImage(0, array1)
c.setImage(1, array2)
shape = array1.shape
corrimage = c.phaseCorrelate()
p.setImage(corrimage)
peak = peakfinder.findSubpixelPeak(corrimage, lpf=1.5)
shift = [0.0, 0.0]
for i in (0, 1):
if peak['subpixel peak'][i] > shape[i] / 2:
shift[i] = peak['subpixel peak'][i] - shape[i]
else:
shift[i] = peak['subpixel peak'][i]
return shift
def __init__(self, id, session, managerlocation, **kwargs):
self.correlator = correlator.Correlator()
self.correlation_types = ['cross', 'phase']
self.tableau_types = ['beam tilt series-power', 'split image-power']
if not hide_incomplete:
self.tableau_types.append('beam tilt series-image')
self.tiltdelta = 5e-3
self.tabscale = None
manualfocuschecker.ManualFocusChecker.__init__(self, id, session,
managerlocation,
**kwargs)
self.parameter_choice = 'Beam Tilt X'
self.increment = 5e-4
self.btcalclient = calibrationclient.BeamTiltCalibrationClient(self)
self.imageshiftcalclient = calibrationclient.ImageShiftCalibrationClient(
self)
self.euclient = calibrationclient.EucentricFocusClient(self)
def correlate(im1, im2):
c = correlator.Correlator()
c.insertImage(im1)
c.insertImage(im2)
pc = c.phaseCorrelate()
def __init__(self, *args, **kwargs):
super(CorrelationRegistration, self).__init__(*args, **kwargs)
self.correlator = correlator.Correlator()
self.peakfinder = peakfinder.PeakFinder()