class MapTester(object):
"test object that collects results"
def __init__(self):
self.mappings = []
self.mapper = PslMap(self)
def mapBlock(self, psl, blk, qRngStart, qRngEnd, tRngStart, tRngEnd):
self.mappings.append(("blk", psl.qName, blk.iBlk, qRngStart, qRngEnd, tRngStart, tRngEnd))
@staticmethod
def __iBlkOrNone(blk):
return blk.iBlk if blk is not None else None
def mapGap(self, psl, prevBlk, nextBlk, qRngStart, qRngEnd, tRngStart, tRngEnd):
self.mappings.append(("gap", psl.qName, MapTester.__iBlkOrNone(prevBlk), MapTester.__iBlkOrNone(nextBlk), qRngStart, qRngEnd, tRngStart, tRngEnd))
def __joinMappings(self):
"join mappings into a tuple for testing and clear for next test"
m = tuple(self.mappings)
self.mappings = []
return m
def targetToQueryMap(self, psl, tRngStart, tRngEnd):
self.mapper.targetToQueryMap(psl, tRngStart, tRngEnd)
return self.__joinMappings()
def queryToTargetMap(self, psl, qRngStart, qRngEnd):
self.mapper.queryToTargetMap(psl, qRngStart, qRngEnd)
return self.__joinMappings()
def __init__(self):
self.mappings = []
self.mapper = PslMap(self)
