def get_attr(attrname):
if attrname == 'labnumber':
if self.user_defined_aliquot and not self.is_special():
v = make_rid(self.labnumber, self.aliquot)
else:
v = self.labnumber
elif attrname.endswith('script'):
# remove mass spectrometer name
v = getattr(self, attrname)
# v = self._remove_mass_spectrometer_name(v)
v = remove_extension(v)
elif attrname == 'overlap':
o, m = self.overlap
if m:
v = '{},{}'.format(*self.overlap)
else:
v = o
else:
try:
v = getattr(self, attrname)
except AttributeError as e:
v = ''
return v
def make_gosub(self):
selection = self.control.code.textCursor().selectedText()
dlg = FileDialog(action='save as',
default_directory=os.path.dirname(self.path))
p = None
# root = os.path.dirname(self.path)
# p = os.path.join(root, 'common', 'test_gosub.py')
if dlg.open():
p = dlg.path
if p:
p = add_extension(p, '.py')
# p='/Users/ross/Desktop/foosub.py'
with open(p, 'w') as wfile:
wfile.write('# Extracted Gosub\n')
wfile.write('# Source: from {}\n'.format(self.path))
wfile.write('# Date: {}\n'.format(datetime.now().strftime('%m-%d-%Y %H:%M')))
wfile.write('def main():\n')
for li in selection.split(u'\u2029'):
wfile.write(u' {}\n'.format(li.lstrip()))
p = remove_extension(p)
rp = os.path.relpath(p, self.path)
rp = rp.replace('/', ':')
self.control.code.replace_selection("gosub('{}')".format(rp[3:]))
def get_attr(attrname):
if attrname == 'labnumber':
if self.user_defined_aliquot and not self.is_special():
v = make_rid(self.labnumber, self.aliquot)
else:
v = self.labnumber
elif attrname.endswith('script'):
# remove mass spectrometer name
v = getattr(self, attrname)
# v = self._remove_mass_spectrometer_name(v)
v = remove_extension(v)
elif attrname == 'overlap':
o, m = self.overlap
if m:
v = '{},{}'.format(*self.overlap)
else:
v = o
else:
try:
v = getattr(self, attrname)
except AttributeError as e:
v = ''
return v
def _sync_measurement(self, meas_analysis, load_aux):
if meas_analysis:
meas = meas_analysis.measurement
if meas:
if meas.script:
self.measurement_script_name = remove_extension(meas.script.name)
self.analysis_type = meas.analysis_type.name
self.mass_spectrometer = meas.mass_spectrometer.name.lower()
self.collection_time_zero_offset = meas.time_zero_offset or 0
if load_aux:
try:
sp = meas.spectrometer_parameters
keys = QTEGRA_SOURCE_KEYS
names = QTEGRA_SOURCE_NAMES
sd = [DValue(n, getattr(sp, k)) for n, k in zip(names, keys)]
self.source_parameters = sd
except AttributeError, e:
# self.source_parameters = [DValue(str(i), i) for i in range(10)]
self.debug('No source parameters available')
defls = meas.deflections
try:
names = sort_detectors([di.detector.name for di in meas.deflections])
self.deflections = [DValue(ni, defls[i].deflection or '---') for i, ni in enumerate(names)]
except AttributeError, e:
# self.deflections = [DValue(str(i), i * 34) for i in range(10)]
self.debug('No deflection available')
def _sync_measurement(self, meas_analysis):
if meas_analysis:
meas = meas_analysis.measurement
if meas:
if meas.script:
self.measurement_script_name = remove_extension(meas.script.name)
self.analysis_type = meas.analysis_type.name
self.mass_spectrometer = meas.mass_spectrometer.name.lower()
self.collection_time_zero_offset = meas.time_zero_offset or 0
def _sync_extraction(self, meas_analysis):
extraction = meas_analysis.extraction
if extraction:
if extraction.script:
self.extraction_script_name = remove_extension(extraction.script.name)
# sensitivity
if meas_analysis.selected_histories:
shist = meas_analysis.selected_histories.selected_sensitivity
if shist:
sm = extraction.sensitivity_multiplier or 1
s = shist.sensitivity.value
self.sensitivity = sm * s
self.extract_device = self._get_extraction_device(extraction)
self.extract_value = extraction.extract_value
# add extract units to meas_ExtractionTable
# eu = extraction.extract_units or 'W'
# self.extract_units = eu
self.extract_units = 'W'
self.cleanup = extraction.cleanup_duration
self.duration = extraction.extract_duration
self.position = get_position(extraction)
self.xyz_position = get_xyz_position(extraction)
for attr in ('beam_diameter', 'pattern',
'ramp_rate', 'ramp_duration'):
v = getattr(extraction, attr)
if v is None:
v = ''
setattr(self, attr, v)
# uv
if 'uv' in self.extract_device:
for attr in ('reprate', 'mask_position', 'mask_name', 'attenuator'):
v = getattr(extraction, attr)
if v is None:
v = ''
setattr(self, attr, v)
snapshots = extraction.snapshots
if snapshots:
self.snapshots = [Snapshot(path=si.path,
name=os.path.basename(si.path),
remote_path=si.remote_path,
image=si.image) for si in snapshots]
def _add_defaults(self, defaults, root, dbfunc=None):
commit = False
repo = self.meta_repo
for name, txt in defaults:
p = os.path.join(repo.path, root, name)
if not os.path.isfile(p):
with open(p, 'w') as wfile:
wfile.write(txt)
repo.add(p, commit=False)
commit = True
if dbfunc:
name = remove_extension(name)
dbfunc(name)
if commit:
repo.commit('added default {}'.format(root.replace('_', ' ')))
def _add_defaults(self, defaults, root, dbfunc=None):
commit = False
repo = self.meta_repo
for name, txt in defaults:
p = os.path.join(repo.path, root, name)
if not os.path.isfile(p):
with open(p, 'w') as wfile:
wfile.write(txt)
repo.add(p, commit=False)
commit = True
if dbfunc:
name = remove_extension(name)
dbfunc(name)
if commit:
repo.commit('added default {}'.format(root.replace('_', ' ')))
def get_attr(attrname):
if attrname == "labnumber":
if self.user_defined_aliquot and not self.is_special():
v = make_rid(self.labnumber, self.aliquot)
else:
v = self.labnumber
elif attrname.endswith("script"):
# remove mass spectrometer name
v = getattr(self, attrname)
# v = self._remove_mass_spectrometer_name(v)
v = remove_extension(v)
elif attrname == "overlap":
o, m = self.overlap
if m:
v = "{},{}".format(*self.overlap)
else:
v = o
else:
try:
v = getattr(self, attrname)
except AttributeError, e:
v = ""
def _remove_file_extension(self, name):
if name is NULL_STR:
return NULL_STR
return remove_extension(name)
def list_exp_dir(self):
root = paths.experiment_dir
for i, di in enumerate((di for di in os.listdir(root) if os.path.isfile(os.path.join(root, di)))):
self.console_event = {"message": remove_extension(di), "indent": i}
def list_exp_dir(self):
root = paths.experiment_dir
for i, di in enumerate((di for di in os.listdir(root) if os.path.isfile(os.path.join(root, di)))):
self.console_event = {'message':remove_extension(di), 'indent':i}
