def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 95
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown_peak_hop'
s = ArgusSpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load(db_mol_weights=False)
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.isotope_group = ArArAge()
a.isotope_group.j = ufloat(0.001, 1e-6)
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a._save_enabled = True
cls.arun = a
def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 95
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown_peak_hop'
s = ArgusSpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load(db_mol_weights=False)
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.isotope_group = ArArAge()
a.isotope_group.j=ufloat(0.001, 1e-6)
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a._save_enabled = True
cls.arun = a
def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 82
aspec.syn_extraction='test'
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown'
a.script_info.extraction_script_name = 'pause'
s = ArgusSpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load()
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.isotope_group = ArArAge()
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a.persister.save_enabled = True
a.persister.datahub=dh=Datahub(bind_mainstore=False)
dh.mainstore.db.kind='mysql'
dh.mainstore.db.username='******'
dh.mainstore.db.name='pychrondata_dev'
dh.mainstore.db.password='******'
dh.mainstore.db.connect()
cls.arun = a
def setUpClass(cls):
aspec = AutomatedRunSpec()
aspec.mass_spectrometer = 'jan'
aspec.labnumber = '17005'
aspec.aliquot = 82
a = AutomatedRun()
a.script_info.measurement_script_name = 'unknown'
s = SpectrometerManager()
ion = IonOpticsManager(spectrometer=s.spectrometer)
s.load(db_mol_weights=False)
a.spectrometer_manager = s
a.ion_optics_manager = ion
a.arar_age = ArArAge()
a._alive = True
a.uuid = '12345-ABCDE'
a.spec = aspec
a._measured = True
a._save_enabled = True
cls.arun = a