def test_save_persister():
paths.build('_dev')
dvc = DVC(bind=False)
dvc.db.connect()
per = DVCPersister(dvc=dvc)
run_spec = AutomatedRunSpec()
run_spec.labnumber = '10001'
run_spec.project = 'Test'
arar = ArArAge()
arar.isotopes['Ar40'] = Isotope(xs=[1, 2, 3], ys=[1, 2, 3],
name='Ar40', detector='H1')
sd = {}
dd = {'H1': 100}
gd = {'H1': 1.021}
per_spec = PersistenceSpec(run_spec=run_spec,
arar_age=arar,
spec_dict=sd,
defl_dict=dd,
gains=gd,
positions=[1, ],
experiment_queue_name='testexp.txt',
measurement_name='jan_unknown.py',
extraction_name='foo.py')
per.per_spec_save(per_spec)
def gen_mock_runspec():
for p, l, _ in runs:
rs = AutomatedRunSpec()
rs.project = p
rs.labnumber = l
yield rs
def get_analysis_import_spec(self, p, delimiter=None):
pspec = PersistenceSpec()
rspec = AutomatedRunSpec()
pspec.run_spec = rspec
# spec = ImportSpec
# analysis = Analysis()
# spec.analysis = analysis
# position = Position()
# analysis.position = position
if delimiter is None:
delim = self._delimiter
def gen():
with open(p, 'r') as rfile:
for line in rfile:
yield line.strip().split(delim)
f = gen()
row = f.next()
# analysis.runid = row[0]
rspec.runid = row[0]
# irrad = Irradiation()
rspec.irradiation = row[1]
row = f.next()
rspec.irradiation_level = row[1]
row = f.next()
rspec.sample = row[1]
row = f.next()
rspec.material = row[1]
row = f.next()
rspec.project = row[1]
row = f.next()
j = float(row[1])
row = f.next()
j_err = float(row[1])
pspec.j, pspec.j_err = j, j_err
row = f.next()
d = row[1]
row = f.next()
t = row[1]
rspec.analysis_timestamp = datetime.strptime('{} {}'.format(d, t),
'%m/%d/%Y %H:%M:%S')
row = f.next()
abundance_sens = float(row[0])
row = f.next()
abundance_sens_err = float(row[0])
row = f.next()
air = float(row[0])
disc = 295.5 / air
pspec.discrimination = disc
row = f.next() # MD errpr
row = f.next() # peakhop cycles
n40 = int(f.next()[0])
n39 = int(f.next()[0])
n38 = int(f.next()[0])
n37 = int(f.next()[0])
n36 = int(f.next()[0])
n35 = int(f.next()[0])
n355 = int(f.next()[0])
f.next()
row = f.next()
b40 = map(float, row)
b39 = map(float, row)
b38 = map(float, row)
b37 = map(float, row)
b36 = map(float, row)
b35 = map(float, row)
for i, row in enumerate(f):
if i > 36:
break
isotopes = {}
isotopes['Ar40'] = self._get_isotope(f, 'Ar40', n40, b40)
isotopes['Ar39'] = self._get_isotope(f, 'Ar39', n39, b39)
isotopes['Ar38'] = self._get_isotope(f, 'Ar38', n38, b38)
isotopes['Ar37'] = self._get_isotope(f, 'Ar37', n37, b37)
isotopes['Ar36'] = self._get_isotope(f, 'Ar36', n36, b36)
isotopes['Ar35'] = self._get_isotope(f, 'Ar35', n35, b35)
isotopes['Ar35.5'] = self._get_isotope(f, 'Ar35.5', n355, b355)
try:
f.next()
self.warning('Extra data in file')
except StopIteration:
pass
pspec.isotope_group = IsotopeGroup(isotopes=isotopes)
return pspec
