def test_samtools_compare(self):
with open(self.samtools, 'r') as expect:
expect = expect.read()
index = Faidx.build_fai(self.fasta)
result = ''.join(index)
assert result == expect
def test_order(self):
index = Faidx.build_fai(self.fasta)
genes = [x.split()[0] for x in index]
assert genes == list(self.faidx.index.keys())
def test_build(self):
with open(self.expect, 'r') as fai:
expect = fai.read()
index = Faidx.build_fai(self.fasta)
result = ''.join(index)
assert result == expect
