def get_segy_real(filename):
'''
Reads a SEG-Y file and returns all traces without additional metadata.
'''
sf = SEGYFile(filename, endian=endian, verbose=VERBOSE)
traces = sf.readTraces()
return traces
def get_segy_real (filename): ''' Reads a SEG-Y file and returns all traces without additional metadata. ''' sf = SEGYFile(filename, endian=endian, verbose=VERBOSE) traces = sf.readTraces() return traces
def get_segy_time (filename): ''' Reads a SEG-Y file and returns all traces, as well as the sample rate (read from the binary header). ''' sf = SEGYFile(filename, endian=endian, verbose=VERBOSE) traces = sf.readTraces() return [traces, sf.bhead['hdt'], sf.trhead[0]['lagb']]
def get_segy_time(filename):
'''
Reads a SEG-Y file and returns all traces, as well as the sample rate
(read from the binary header).
'''
sf = SEGYFile(filename, endian=endian, verbose=VERBOSE)
traces = sf.readTraces()
return [traces, sf.bhead['hdt'], sf.trhead[0]['lagb']]
def getGroupDict(fn):
if sfopts is not None:
sf = SEGYFile(fn, **sfopts)
else:
sf = SEGYFile(fn)
fnbase = os.path.split(fn)[-1]
gd = matcher.match(fnbase).groupdict()
gd['data'] = sf[::2] + 1j * sf[1::2]
return gd
def get_segy_complex(filename):
'''
Reads a SEG-Y file and returns all traces without additional metadata.
The traces are split into two separate arrays, one each for the real and
imaginary components of the data.
'''
sf = SEGYFile(filename, endian=endian, verbose=VERBOSE)
real = sf[::2] #sf.readTraces(sf.findTraces('trid',1001,1001))
imag = sf[1::2] #sf.readTraces(sf.findTraces('trid',1002,1002))
return real + 1j * imag
from pygeo.analysis import *
from pygeo.segyread import SEGYFile
sfs2D = SEGYFile('syn2d-after20-postmod-windowed.ppre.su',
isSU=True,
endian='Little')
sfs00 = SEGYFile('synth-after00-postmod-windowed.ppre.su',
isSU=True,
endian='Little')
sfs28 = SEGYFile('synth-after28-postmod-windowed.ppre.su',
isSU=True,
endian='Little')
sfo = SEGYFile('real-withpicks.ppre.su', isSU=True, endian='Little')
picks = getpicks(sfo)
offsets = calcoffset(sfo)
live = getlive(offsets)
loffs = offsets[live]
lpicks = picks[live]
lrpicks = lpicks / 1000. - timereduce(loffs, 4500, 0)
otraces = sfo[:]
s2Dtraces = sfs2D[:]
s00traces = sfs00[:]
s28traces = sfs28[:]
lotraces = otraces[live]
ls2Dtraces = s2Dtraces[live]
ls00traces = s00traces[live]
ls28traces = s28traces[live]
def loadfunc ():
sf = SEGYFile(infile)
sf._calcEnsembles()
ntr = sf.ntr
nsrc = len(sf.ensembles)
nrec = ntr / nsrc
nsamp = sf.ns
dt = sf.bhead['hdt'] / 1.e6
trh0 = sf.trhead[0]
scalco = trh0['scalco']
if (scalco < 0):
scalco = -1. / scalco
scalel = trh0['scalel']
if (scalel < 0):
scalel = -1. / scalel
datadims = (nsrc,nrec,nsamp)
headerdims = (nsrc,nrec)
flatdatadims = (ntr,nsamp)
params = {
'ntr': ntr,
'nsrc': nsrc,
'nrec': nrec,
'nsamp': nsamp,
'dt': dt,
'scalco': scalco,
'scalel': scalel,
'datadims': datadims,
'headerdims': headerdims,
'flatdatadims': flatdatadims,
}
dbase['params'] = params
sx = np.array([float(abs(trh['sx'])) for trh in sf.trhead]).reshape(headerdims)
gx = np.array([float(abs(trh['gx'])) for trh in sf.trhead]).reshape(headerdims)
offset = abs(sx - gx)
cdp = (sx + gx)/2.
water = offset / watervelocity
wmute = water / dt
headers = {
'sx': sx,
'gx': gx,
'offset': offset,
'cdp': cdp,
'water': water,
'wmute': wmute,
}
dbase['headers'] = headers
if (os.path.exists(tempfile) and os.path.getmtime(tempfile) > os.path.getmtime(infile)):
tracebuf = np.memmap(tempfile, dtype=np.float32, shape=datadims, mode='r+')
else:
tracebuf = np.memmap(tempfile, dtype=np.float32, shape=datadims, mode='w+')
tracebuf[:] = sf[:].reshape(datadims)
dbase['data_orig'] = tracebuf
dbase['data_current'] = tracebuf
if (gopts['filename'].find(thisprojnm) == 0):
gopts['projnm'] = thisprojnm
gopts['inifile'] = gri
if (options.verbose):
print('Found matching project file: %s' % (gri, ))
break
else:
parser.error('This program requires a project *.ini file to function!')
except:
parser.error('Something happened!')
ini = readini(gopts['inifile'])
extent = [
ini['xorig'], ini['xorig'] + ini['dx'] * (ini['nx'] - 1),
-(ini['zorig'] + ini['dz'] * (ini['nz'] - 1)), -ini['zorig']
]
srcs = ini['srcs']
sf = SEGYFile(gopts['filename'], endian='Big', verbose=options.verbose)
model = sf[:].T
fig = pl.figure()
ax = fig.add_subplot(1, 1, 1, aspect=1.0)
pl.imshow(model, extent=extent)
pl.plot(srcs[:, 0], -srcs[:, 2], 'w.')
ax.axis(extent)
pl.show()
x0, x1 = [np.float(item) for item in options.extent.strip().split(',')]
# Convert rotation angle to radians
angle = np.float(options.angle) * np.pi / 180.
# Convert basis to array
basis = np.array([np.float(item) for item in options.basis.strip().split(',')])
unit = np.float(options.unit)
zantithesis = np.float(options.zdir)
stackfile = args[0]
velfile = args[1]
outfile = args[2]
sfstack = SEGYFile(stackfile, endian='Big')
sfvel = SEGYFile(velfile, endian='Big')
# ------------------------------------------------------------------------
# Main Program
strh0 = sfstack.trhead[0]
sntr = sfstack.ntr
sns = sfstack.ns
vtrh0 = sfvel.trhead[0]
vntr = sfvel.ntr
vns = sfvel.ns
scalco = float(strh0['scalco'])
if (scalco < 0):
else:
outfile = infile + '.proj'
# Convert rotation angle to radians
angle = np.float(options.angle) * np.pi / 180.
# Convert basis to array
basis = np.array([np.float(item) for item in options.basis.strip().split(',')])
# Set units
unit = np.float(options.unit)
printnow('Reading input files')
# Get data and geometry input files
sfdata = SEGYFile(infile)
if (not options.geom is None):
geomfile = options.geom
sfgeom = SEGYFile(geomfile)
else:
geomfile = infile
sfgeom = sfdata
printnow('Computing geometry')
# Grab headers
trh0 = sfgeom.trhead[0]
ntr = sfgeom.ntr
ns = sfgeom.ns
# Check to see if geometry and data files are the same shape
elif (not os.path.isfile(args[0])):
parser.error('File %s does not exist!' % (args[0], ))
infile = args[0]
if (len(args) > 1):
outfile = args[1]
else:
outfile = infile + '.su'
if (options.verbose):
print(
'\nSEG-Y --> SU File Converter v1.0\nBrendan Smithyman, July 2011\n\n\tConverting \'%s\' to \'%s\'...\n'
% (infile, outfile))
sf = SEGYFile(infile, verbose=options.verbose, majorheadersonly=False)
intr = sf.readTraces()
if (options.normalize):
intr = sf.sNormalize(intr)
if (options.verbose):
print('Generating output file.')
if (len(intr.shape) == 1):
intr = [intr]
sf.writeSU(outfile, intr, sf.trhead)
if (options.verbose):
print('Done!\n')
wlen = DEFAULT_WLEN
if len(sys.argv) >= 3:
wlen = int(sys.argv[2])
shift = -wlen
if len(sys.argv) >= 4:
shift = -int(sys.argv[3])
inifile = glob.glob('*.ini')[0]
projnm = inifile.split('.')[0]
ini = readini(inifile)
ns = ini['ns']
nr = ini['nr']
sf = SEGYFile(infile)
dt = sf.bhead['hdt'] * TUNIT
picks = (np.argmax(energyratio(sf[:], wlen), axis=1) + shift)
picks.shape = (ns, nr)
picks = picks * dt
with open('%s.picks'%(projnm,), 'w') as fp:
fp.writelines(['%d %d %f\n'%(isrc+1, irec+1, picks[isrc, irec]) for isrc in xrange(ns) for irec in xrange(nr)])
# Convert basis to array
basis = np.array([np.float(item) for item in options.basis.strip().split(',')])
pickkey = options.key
unit = np.float(options.unit)
zantithesis = np.float(options.zdir)
tfac = np.float(options.tfac)
shotout = options.shotout
error = np.float(options.error)
omit = options.omit
# Open SEG-Y file and get first trace header
sys.stdout.write('Reading "%s"...\n' % (infile, ))
sys.stdout.flush()
sf = SEGYFile(infile, endian='Big')
trh0 = sf.trhead[0]
sys.stdout.write('Calculating scale factors...\n')
sys.stdout.flush()
# Determine coordinate and elevation scale factors from first trace header
# (assume same for all traces)
if (trh0['scalco'] < 0):
scalco = 1. / abs(trh0['scalco'])
else:
scalco = trh0['scalco']
scalco = scalco / unit
if (trh0['scalel'] < 0):
estfiles = np.array(glob.glob(estfilekey))
sest = np.sort([float(item[lpn + 6:]) for item in estfiles])
maybePrint('\tfound %d synthetic data files' % (len(estfiles), ))
obsfiles = np.array(glob.glob(obsfilekey))
sobs = np.sort([float(item[lpn + 6:]) for item in obsfiles])
maybePrint('\tfound %d observed data files' % (len(obsfiles), ))
sortedfreqs = [item for item in sest if item in sobs]
estfiles = [estfilecompose % (item, ) for item in sortedfreqs]
obsfiles = [obsfilecompose % (item, ) for item in sortedfreqs]
maybePrint('\twith %d frequencies in common' % (len(sortedfreqs), ))
tau = float(options.tau)
if (tau):
sf = SEGYFile(obsfiles[0])
dims = (sf.ntr / 2, sf.ns)
if (norm in picknorms):
if (os.path.isfile(options.pickfile)):
maybePrint('\treading picks from %s...' % (options.pickfile, ))
pickmap = getpicksbitmap(options.pickfile, dims)
else:
parser.error(
'Laplace-domain (Tau) compensation not implemented for offset! File %s does not exist. Please provide a pick file.'
% (options.pickfile, ))
else:
maybePrint(
'\tNB: Tau of %3.3f specified; meaningless for fazonly=%d.' %
(tau, norm))
else:
pickmap = None
# Convert basis to array
basis = np.array([np.float(item) for item in options.basis.strip().split(",")])
pickkey = options.key
unit = np.float(options.unit)
zantithesis = np.float(options.zdir)
tfac = np.float(options.tfac)
shotout = options.shotout
error = np.float(options.error)
omit = options.omit
# Open SEG-Y file and get first trace header
sys.stdout.write('Reading "%s"...\n' % (infile,))
sys.stdout.flush()
sf = SEGYFile(infile, endian="Big")
trh0 = sf.trhead[0]
sys.stdout.write("Calculating scale factors...\n")
sys.stdout.flush()
# Determine coordinate and elevation scale factors from first trace header
# (assume same for all traces)
if trh0["scalco"] < 0:
scalco = 1.0 / abs(trh0["scalco"])
else:
scalco = trh0["scalco"]
scalco = scalco / unit
if trh0["scalel"] < 0:
def sfWrapper(filename):
sf = SEGYFile(filename)
return sf
x0, x1 = [np.float(item) for item in options.extent.strip().split(',')]
# Convert rotation angle to radians
angle = np.float(options.angle)*np.pi/180.
# Convert basis to array
basis = np.array([np.float(item) for item in options.basis.strip().split(',')])
unit = np.float(options.unit)
zantithesis = np.float(options.zdir)
stackfile = args[0]
velfile = args[1]
outfile = args[2]
sfstack = SEGYFile(stackfile, endian='Big')
sfvel = SEGYFile(velfile, endian='Big')
# ------------------------------------------------------------------------
# Main Program
strh0 = sfstack.trhead[0]
sntr = sfstack.ntr
sns = sfstack.ns
vtrh0 = sfvel.trhead[0]
vntr = sfvel.ntr
vns = sfvel.ns
scalco = float(strh0['scalco'])
if (scalco < 0):
def loadfunc():
sf = SEGYFile(infile)
sf._calcEnsembles()
ntr = sf.ntr
nsrc = len(sf.ensembles)
nrec = ntr / nsrc
nsamp = sf.ns
dt = sf.bhead['hdt'] / 1.e6
trh0 = sf.trhead[0]
scalco = trh0['scalco']
if (scalco < 0):
scalco = -1. / scalco
scalel = trh0['scalel']
if (scalel < 0):
scalel = -1. / scalel
datadims = (nsrc, nrec, nsamp)
headerdims = (nsrc, nrec)
flatdatadims = (ntr, nsamp)
params = {
'ntr': ntr,
'nsrc': nsrc,
'nrec': nrec,
'nsamp': nsamp,
'dt': dt,
'scalco': scalco,
'scalel': scalel,
'datadims': datadims,
'headerdims': headerdims,
'flatdatadims': flatdatadims,
}
dbase['params'] = params
sx = np.array([float(abs(trh['sx']))
for trh in sf.trhead]).reshape(headerdims)
gx = np.array([float(abs(trh['gx']))
for trh in sf.trhead]).reshape(headerdims)
offset = abs(sx - gx)
cdp = (sx + gx) / 2.
water = offset / watervelocity
wmute = water / dt
headers = {
'sx': sx,
'gx': gx,
'offset': offset,
'cdp': cdp,
'water': water,
'wmute': wmute,
}
dbase['headers'] = headers
if (os.path.exists(tempfile)
and os.path.getmtime(tempfile) > os.path.getmtime(infile)):
tracebuf = np.memmap(tempfile,
dtype=np.float32,
shape=datadims,
mode='r+')
else:
tracebuf = np.memmap(tempfile,
dtype=np.float32,
shape=datadims,
mode='w+')
tracebuf[:] = sf[:].reshape(datadims)
dbase['data_orig'] = tracebuf
dbase['data_current'] = tracebuf
if (len(args) != 1 ):
parser.error('Please specify a valid filename to convert.')
elif (not os.path.isfile(args[0])):
parser.error('File %s does not exist!'%(args[0],))
infile = args[0]
if (len(args) > 1):
outfile = args[1]
else:
outfile = infile + '.su'
if (options.verbose):
print('\nSEG-Y --> SU File Converter v1.0\nBrendan Smithyman, July 2011\n\n\tConverting \'%s\' to \'%s\'...\n'%(infile, outfile))
sf = SEGYFile(infile, verbose=options.verbose, majorheadersonly=False)
intr = sf.readTraces()
if (options.normalize):
intr = sf.sNormalize(intr)
if (options.verbose):
print('Generating output file.')
if (len(intr.shape) == 1):
intr = [intr]
sf.writeSU(outfile, intr, sf.trhead)
if (options.verbose):
print('Done!\n')
from pygeo.analysis import *
from pygeo.segyread import SEGYFile
sfs2D = SEGYFile('syn2d-after20-postmod-windowed.ppre.su', isSU=True, endian='Little')
sfs00 = SEGYFile('synth-after00-postmod-windowed.ppre.su', isSU=True, endian='Little')
sfs28 = SEGYFile('synth-after28-postmod-windowed.ppre.su', isSU=True, endian='Little')
sfo = SEGYFile('real-withpicks.ppre.su', isSU=True, endian='Little')
picks = getpicks(sfo)
offsets = calcoffset(sfo)
live = getlive(offsets)
loffs = offsets[live]
lpicks = picks[live]
lrpicks = lpicks/1000. - timereduce(loffs, 4500, 0)
otraces = sfo[:]
s2Dtraces = sfs2D[:]
s00traces = sfs00[:]
s28traces = sfs28[:]
lotraces = otraces[live]
ls2Dtraces = s2Dtraces[live]
ls00traces = s00traces[live]
ls28traces = s28traces[live]
lnotraces = sfo.sNormalize(lotraces)
lns2Dtraces = sfo.sNormalize(ls2Dtraces)
lns00traces = sfo.sNormalize(ls00traces)
lns28traces = sfo.sNormalize(ls28traces)
dto = sfo.trhead[0]['dt']/1000000.
