def run_algorithm(): unsupported_modes = ['random_slice', 'random_uniform'] algorithm = SGD(learning_rate, cost, batch_size=batch_size, train_iteration_mode=mode, monitoring_dataset=None, termination_criterion=termination_criterion, update_callbacks=None, init_momentum=None, set_batch_size=False) algorithm.setup(dataset=dataset, model=model) raised = False try: algorithm.train(dataset) except ValueError: print mode assert mode in unsupported_modes raised = True if mode in unsupported_modes: assert raised return True return False
def run_algorithm(): unsupported_modes = ['random_slice', 'random_uniform'] algorithm = SGD(learning_rate, cost, batch_size=5, train_iteration_mode=mode, monitoring_dataset=None, termination_criterion=termination_criterion, update_callbacks=None, init_momentum=None, set_batch_size=False) algorithm.setup(dataset=dataset, model=model) raised = False try: algorithm.train(dataset) except ValueError: print mode assert mode in unsupported_modes raised = True if mode in unsupported_modes: assert raised return True return False
def test_adadelta(): """ Make sure that learning_rule.AdaDelta obtains the same parameter values as with a hand-crafted AdaDelta implementation, given a dummy model and learning rate scaler for each parameter. Reference: "AdaDelta: An Adaptive Learning Rate Method", Matthew D. Zeiler. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfOneHalfParamsSquared(), (0., DummyCost())]) model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) decay = 0.95 sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=AdaDelta(decay), batch_size=1) sgd.setup(model=model, dataset=dataset) state = {} for param in model.get_params(): param_shape = param.get_value().shape state[param] = {} state[param]['g2'] = np.zeros(param_shape) state[param]['dx2'] = np.zeros(param_shape) def adadelta_manual(model, state): inc = [] rval = [] for scale, param in izip(scales, model.get_params()): pstate = state[param] param_val = param.get_value() # begin adadelta pstate['g2'] = decay * pstate['g2'] + (1 - decay) * param_val**2 rms_g_t = np.sqrt(pstate['g2'] + scale * learning_rate) rms_dx_tm1 = np.sqrt(pstate['dx2'] + scale * learning_rate) dx_t = -rms_dx_tm1 / rms_g_t * param_val pstate['dx2'] = decay * pstate['dx2'] + (1 - decay) * dx_t**2 rval += [param_val + dx_t] return rval manual = adadelta_manual(model, state) sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params())) manual = adadelta_manual(model, state) sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params()))
def test_adadelta(): """ Make sure that learning_rule.AdaDelta obtains the same parameter values as with a hand-crafted AdaDelta implementation, given a dummy model and learning rate scaler for each parameter. Reference: "AdaDelta: An Adaptive Learning Rate Method", Matthew D. Zeiler. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfOneHalfParamsSquared(), (0., DummyCost())]) model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) decay = 0.95 sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=AdaDelta(decay), batch_size=1) sgd.setup(model=model, dataset=dataset) state = {} for param in model.get_params(): param_shape = param.get_value().shape state[param] = {} state[param]['g2'] = np.zeros(param_shape) state[param]['dx2'] = np.zeros(param_shape) def adadelta_manual(model, state): inc = [] rval = [] for scale, param in izip(scales, model.get_params()): pstate = state[param] param_val = param.get_value() # begin adadelta pstate['g2'] = decay * pstate['g2'] + (1 - decay) * param_val ** 2 rms_g_t = np.sqrt(pstate['g2'] + scale * learning_rate) rms_dx_tm1 = np.sqrt(pstate['dx2'] + scale * learning_rate) dx_t = -rms_dx_tm1 / rms_g_t * param_val pstate['dx2'] = decay * pstate['dx2'] + (1 - decay) * dx_t ** 2 rval += [param_val + dx_t] return rval manual = adadelta_manual(model, state) sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params())) manual = adadelta_manual(model, state) sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params()))
def test_lr_scalers(): """ Tests that SGD respects Model.get_lr_scalers """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfParams(), (0., DummyCost())]) scales = [.01, .02, .05, 1., 5.] shapes = [(1, ), (9, ), (8, 7), (6, 5, 4), (3, 2, 2, 2)] learning_rate = .001 class ModelWithScalers(Model): def __init__(self): super(ModelWithScalers, self).__init__() self._params = [sharedX(np.zeros(shape)) for shape in shapes] self.input_space = VectorSpace(1) def __call__(self, X): # Implemented only so that DummyCost would work return X def get_lr_scalers(self): return dict(zip(self._params, scales)) model = ModelWithScalers() dataset = ArangeDataset(1) sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=Momentum(.0), batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] manual = [ param - learning_rate * scale for param, scale in zip(manual, scales) ] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params())) manual = [ param - learning_rate * scale for param, scale in zip(manual, scales) ] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params()))
def test_lr_scalers(): """ Tests that SGD respects Model.get_lr_scalers """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfParams(), (0., DummyCost())]) scales = [.01, .02, .05, 1., 5.] shapes = [(1,), (9,), (8, 7), (6, 5, 4), (3, 2, 2, 2)] learning_rate = .001 class ModelWithScalers(Model): def __init__(self): super(ModelWithScalers, self).__init__() self._params = [sharedX(np.zeros(shape)) for shape in shapes] self.input_space = VectorSpace(1) def __call__(self, X): # Implemented only so that DummyCost would work return X def get_lr_scalers(self): return dict(zip(self._params, scales)) model = ModelWithScalers() dataset = ArangeDataset(1) sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=Momentum(.0), batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] manual = [param - learning_rate * scale for param, scale in zip(manual, scales)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params())) manual = [param - learning_rate * scale for param, scale in zip(manual, scales)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params()))
def test_sgd_unspec_num_mon_batch(): # tests that if you don't specify a number of # monitoring batches, SGD configures the monitor # to run on all the data m = 25 visited = [False] * m rng = np.random.RandomState([25, 9, 2012]) X = np.zeros((m, 1)) X[:, 0] = np.arange(m) dataset = DenseDesignMatrix(X=X) model = SoftmaxModel(1) learning_rate = 1e-3 batch_size = 5 cost = DummyCost() algorithm = SGD(learning_rate, cost, batch_size=batch_size, monitoring_batches=None, monitoring_dataset=dataset, termination_criterion=None, update_callbacks=None, init_momentum=None, set_batch_size=False) algorithm.setup(dataset=dataset, model=model) monitor = Monitor.get_monitor(model) X = T.matrix() def tracker(*data): X, = data assert X.shape[1] == 1 for i in xrange(X.shape[0]): visited[int(X[i, 0])] = True monitor.add_channel(name='tracker', ipt=X, val=0., prereqs=[tracker], data_specs=(model.get_input_space(), model.get_input_source())) monitor() if False in visited: print visited assert False
def test_sgd_unspec_num_mon_batch(): # tests that if you don't specify a number of # monitoring batches, SGD configures the monitor # to run on all the data m = 25 visited = [False] * m rng = np.random.RandomState([25, 9, 2012]) X = np.zeros((m, 1)) X[:, 0] = np.arange(m) dataset = DenseDesignMatrix(X=X) model = SoftmaxModel(1) learning_rate = 1e-3 batch_size = 5 cost = DummyCost() algorithm = SGD(learning_rate, cost, batch_size=5, monitoring_batches=None, monitoring_dataset=dataset, termination_criterion=None, update_callbacks=None, init_momentum=None, set_batch_size=False) algorithm.setup(dataset=dataset, model=model) monitor = Monitor.get_monitor(model) X = T.matrix() def tracker(*data): X, = data assert X.shape[1] == 1 for i in xrange(X.shape[0]): visited[int(X[i, 0])] = True monitor.add_channel(name='tracker', ipt=X, val=0., prereqs=[tracker], data_specs=(model.get_input_space(), model.get_input_source())) monitor() if False in visited: print visited assert False
def test_adagrad(): """ Make sure that learning_rule.AdaGrad obtains the same parameter values as with a hand-crafted AdaGrad implementation, given a dummy model and learning rate scaler for each parameter. Reference: "Adaptive subgradient methods for online learning and stochastic optimization", Duchi J, Hazan E, Singer Y. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfOneHalfParamsSquared(), (0., DummyCost())]) model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=AdaGrad(), batch_size=1) sgd.setup(model=model, dataset=dataset) state = {} for param in model.get_params(): param_shape = param.get_value().shape state[param] = {} state[param]['sg2'] = np.zeros(param_shape) def adagrad_manual(model, state): rval = [] for scale, param in izip(scales, model.get_params()): pstate = state[param] param_val = param.get_value() # begin adadelta pstate['sg2'] += param_val ** 2 dx_t = - (scale * learning_rate / np.sqrt(pstate['sg2']) * param_val) rval += [param_val + dx_t] return rval manual = adagrad_manual(model, state) sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params())) manual = adagrad_manual(model, state) sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params()))
def test_adagrad(): """ Make sure that learning_rule.AdaGrad obtains the same parameter values as with a hand-crafted AdaGrad implementation, given a dummy model and learning rate scaler for each parameter. Reference: "Adaptive subgradient methods for online learning and stochastic optimization", Duchi J, Hazan E, Singer Y. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfOneHalfParamsSquared(), (0., DummyCost())]) model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=AdaGrad(), batch_size=1) sgd.setup(model=model, dataset=dataset) state = {} for param in model.get_params(): param_shape = param.get_value().shape state[param] = {} state[param]['sg2'] = np.zeros(param_shape) def adagrad_manual(model, state): rval = [] for scale, param in izip(scales, model.get_params()): pstate = state[param] param_val = param.get_value() # begin adadelta pstate['sg2'] += param_val**2 dx_t = -(scale * learning_rate / np.sqrt(pstate['sg2']) * param_val) rval += [param_val + dx_t] return rval manual = adagrad_manual(model, state) sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params())) manual = adagrad_manual(model, state) sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params()))
def test_lr_scalers_momentum(): """ Tests that SGD respects Model.get_lr_scalers when using momentum. """ cost = SumOfParams() scales = [.01, .02, .05, 1., 5.] shapes = [(1, ), (9, ), (8, 7), (6, 5, 4), (3, 2, 2, 2)] learning_rate = .001 class ModelWithScalers(Model): def __init__(self): self._params = [sharedX(np.zeros(shape)) for shape in shapes] self.input_space = VectorSpace(1) def get_lr_scalers(self): return dict(zip(self._params, scales)) model = ModelWithScalers() dataset = ArangeDataset(1) momentum = 0.5 sgd = SGD(cost=cost, learning_rate=learning_rate, init_momentum=momentum, batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] inc = [-learning_rate * scale for param, scale in zip(manual, scales)] manual = [param + i for param, i in zip(manual, inc)] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params())) manual = [ param - learning_rate * scale + i * momentum for param, scale, i in zip(manual, scales, inc) ] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params()))
def test_rmsprop(): """ Make sure that learning_rule.RMSProp obtains the same parameter values as with a hand-crafted RMSProp implementation, given a dummy model and learning rate scaler for each parameter. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfOneHalfParamsSquared(), (0., DummyCost())]) scales = [.01, .02, .05, 1., 5.] shapes = [(1, ), (9, ), (8, 7), (6, 5, 4), (3, 2, 2, 2)] model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) learning_rate = .001 decay = 0.90 max_scaling = 1e5 sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=RMSProp(decay), batch_size=1) sgd.setup(model=model, dataset=dataset) state = {} for param in model.get_params(): param_shape = param.get_value().shape state[param] = {} state[param]['g2'] = np.zeros(param_shape) def rmsprop_manual(model, state): inc = [] rval = [] epsilon = 1. / max_scaling for scale, param in izip(scales, model.get_params()): pstate = state[param] param_val = param.get_value() # begin rmsprop pstate['g2'] = decay * pstate['g2'] + (1 - decay) * param_val**2 rms_g_t = np.maximum(np.sqrt(pstate['g2']), epsilon) dx_t = -scale * learning_rate / rms_g_t * param_val rval += [param_val + dx_t] return rval manual = rmsprop_manual(model, state) sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params()))
def test_rmsprop(): """ Make sure that learning_rule.RMSProp obtains the same parameter values as with a hand-crafted RMSProp implementation, given a dummy model and learning rate scaler for each parameter. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfOneHalfParamsSquared(), (0., DummyCost())]) scales = [.01, .02, .05, 1., 5.] shapes = [(1,), (9,), (8, 7), (6, 5, 4), (3, 2, 2, 2)] model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) learning_rate = .001 decay = 0.90 max_scaling = 1e5 sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=RMSProp(decay), batch_size=1) sgd.setup(model=model, dataset=dataset) state = {} for param in model.get_params(): param_shape = param.get_value().shape state[param] = {} state[param]['g2'] = np.zeros(param_shape) def rmsprop_manual(model, state): inc = [] rval = [] epsilon = 1. / max_scaling for scale, param in izip(scales, model.get_params()): pstate = state[param] param_val = param.get_value() # begin rmsprop pstate['g2'] = decay * pstate['g2'] + (1 - decay) * param_val ** 2 rms_g_t = np.maximum(np.sqrt(pstate['g2']), epsilon) dx_t = - scale * learning_rate / rms_g_t * param_val rval += [param_val + dx_t] return rval manual = rmsprop_manual(model, state) sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params()))
def test_nesterov_momentum(): """ Make sure that learning_rule.Momentum obtains the same parameter values as with a hand-crafted sgd w/ momentum implementation, given a dummy model and learning rate scaler for each parameter. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfParams(), (0., DummyCost())]) model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) momentum = 0.5 sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=Momentum(momentum, nesterov_momentum=True), batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] vel = [-learning_rate * scale for scale in scales] updates = [ -learning_rate * scale + v * momentum for scale, v in izip(scales, vel) ] manual = [param + update for param, update in izip(manual, updates)] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params())) vel = [ -learning_rate * scale + i * momentum for scale, i in izip(scales, vel) ] updates = [ -learning_rate * scale + v * momentum for scale, v in izip(scales, vel) ] manual = [param + update for param, update in izip(manual, updates)] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params()))
def test_lr_scalers_momentum(): """ Tests that SGD respects Model.get_lr_scalers when using momentum. """ cost = SumOfParams() scales = [ .01, .02, .05, 1., 5. ] shapes = [(1,), (9,), (8, 7), (6, 5, 4), (3, 2, 2, 2)] learning_rate = .001 class ModelWithScalers(Model): def __init__(self): self._params = [sharedX(np.zeros(shape)) for shape in shapes] self.input_space = VectorSpace(1) def get_lr_scalers(self): return dict(zip(self._params, scales)) model = ModelWithScalers() dataset = ArangeDataset(1) momentum = 0.5 sgd = SGD(cost=cost, learning_rate=learning_rate, init_momentum=momentum, batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] inc = [ - learning_rate * scale for param, scale in zip(manual, scales)] manual = [param + i for param, i in zip(manual, inc)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params())) manual = [param - learning_rate * scale + i * momentum for param, scale, i in zip(manual, scales, inc)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params()))
def test_sgd_sequential(): # tests that requesting train_iteration_mode = 'sequential' # works dim = 1 batch_size = 3 m = 5 * batch_size dataset = ArangeDataset(m) model = SoftmaxModel(dim) learning_rate = 1e-3 batch_size = 5 visited = [False] * m def visit(X): assert X.shape[1] == 1 assert np.all(X[1:] == X[0:-1]+1) start = int(X[0, 0]) if start > 0: assert visited[start - 1] for i in xrange(batch_size): assert not visited[start+i] visited[start+i] = 1 data_specs = (model.get_input_space(), model.get_input_source()) cost = CallbackCost(visit, data_specs) # We need to include this so the test actually stops running at some point termination_criterion = EpochCounter(5) algorithm = SGD(learning_rate, cost, batch_size=batch_size, train_iteration_mode='sequential', monitoring_dataset=None, termination_criterion=termination_criterion, update_callbacks=None, init_momentum=None, set_batch_size=False) algorithm.setup(dataset=dataset, model=model) algorithm.train(dataset) assert all(visited)
def test_sgd_sequential(): # tests that requesting train_iteration_mode = 'sequential' # works dim = 1 batch_size = 3 m = 5 * batch_size dataset = ArangeDataset(m) model = SoftmaxModel(dim) learning_rate = 1e-3 batch_size = 5 visited = [False] * m def visit(X): assert X.shape[1] == 1 assert np.all(X[1:] == X[0:-1] + 1) start = int(X[0, 0]) if start > 0: assert visited[start - 1] for i in xrange(batch_size): assert not visited[start + i] visited[start + i] = 1 data_specs = (model.get_input_space(), model.get_input_source()) cost = CallbackCost(visit, data_specs) # We need to include this so the test actually stops running at some point termination_criterion = EpochCounter(5) algorithm = SGD(learning_rate, cost, batch_size=5, train_iteration_mode='sequential', monitoring_dataset=None, termination_criterion=termination_criterion, update_callbacks=None, init_momentum=None, set_batch_size=False) algorithm.setup(dataset=dataset, model=model) algorithm.train(dataset) assert all(visited)
def test_momentum(): """ Make sure that learning_rule.Momentum obtains the same parameter values as with a hand-crafted sgd w/ momentum implementation, given a dummy model and learning rate scaler for each parameter. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfParams(), (0., DummyCost())]) scales = [.01, .02, .05, 1., 5.] shapes = [(1, ), (9, ), (8, 7), (6, 5, 4), (3, 2, 2, 2)] model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) learning_rate = .001 momentum = 0.5 sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=Momentum(momentum), batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] inc = [-learning_rate * scale for param, scale in zip(manual, scales)] manual = [param + i for param, i in zip(manual, inc)] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params())) manual = [ param - learning_rate * scale + i * momentum for param, scale, i in zip(manual, scales, inc) ] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params()))
def test_nesterov_momentum(): """ Make sure that learning_rule.Momentum obtains the same parameter values as with a hand-crafted sgd w/ momentum implementation, given a dummy model and learning rate scaler for each parameter. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfParams(), (0., DummyCost())]) model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) momentum = 0.5 sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=Momentum(momentum, nesterov_momentum=True), batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] vel = [-learning_rate * scale for scale in scales] updates = [-learning_rate * scale + v * momentum for scale, v in izip(scales, vel)] manual = [param + update for param, update in izip(manual, updates)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params())) vel = [-learning_rate * scale + i * momentum for scale, i in izip(scales, vel)] updates = [-learning_rate * scale + v * momentum for scale, v in izip(scales, vel)] manual = [param + update for param, update in izip(manual, updates)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params()))
def test_lr_scalers_momentum(): """ Tests that SGD respects Model.get_lr_scalers when using momentum. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfParams(), (0., DummyCost())]) scales = [.01, .02, .05, 1., 5.] shapes = [(1, ), (9, ), (8, 7), (6, 5, 4), (3, 2, 2, 2)] model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) learning_rate = .001 momentum = 0.5 sgd = SGD(cost=cost, learning_rate=learning_rate, init_momentum=momentum, batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] inc = [-learning_rate * scale for param, scale in zip(manual, scales)] manual = [param + i for param, i in zip(manual, inc)] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params())) manual = [ param - learning_rate * scale + i * momentum for param, scale, i in zip(manual, scales, inc) ] sgd.train(dataset=dataset) assert all( np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params()))
def test_lr_scalers_momentum(): """ Tests that SGD respects Model.get_lr_scalers when using momentum. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfParams(), (0., DummyCost())]) scales = [.01, .02, .05, 1., 5.] shapes = [(1,), (9,), (8, 7), (6, 5, 4), (3, 2, 2, 2)] model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) learning_rate = .001 momentum = 0.5 sgd = SGD(cost=cost, learning_rate=learning_rate, init_momentum=momentum, batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] inc = [-learning_rate * scale for param, scale in zip(manual, scales)] manual = [param + i for param, i in zip(manual, inc)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params())) manual = [param - learning_rate * scale + i * momentum for param, scale, i in zip(manual, scales, inc)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in zip(manual, model.get_params()))
def test_momentum(): """ Make sure that learning_rule.Momentum obtains the same parameter values as with a hand-crafted sgd w/ momentum implementation, given a dummy model and learning rate scaler for each parameter. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfParams(), (0., DummyCost())]) scales = [.01, .02, .05, 1., 5.] shapes = [(1,), (9,), (8, 7), (6, 5, 4), (3, 2, 2, 2)] model = DummyModel(shapes, lr_scalers=scales) dataset = ArangeDataset(1) learning_rate = .001 momentum = 0.5 sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=Momentum(momentum), batch_size=1) sgd.setup(model=model, dataset=dataset) manual = [param.get_value() for param in model.get_params()] inc = [-learning_rate * scale for scale in scales] manual = [param + i for param, i in izip(manual, inc)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params())) manual = [param - learning_rate * scale + i * momentum for param, scale, i in izip(manual, scales, inc)] sgd.train(dataset=dataset) assert all(np.allclose(manual_param, sgd_param.get_value()) for manual_param, sgd_param in izip(manual, model.get_params()))
def prepare_adagrad_test(dataset_type='arange', model_type='random'): """ Factor out common code for AdaGrad tests. Parameters ---------- dataset_type : string, optional Can use either `arange` to use an ArangeDataset instance or `zeros` to create an all-zeros DenseDesignMatrix. model_type : string, optional How to initialize the model; `random` will initialize parameters to random values, `zeros` to zero. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfOneHalfParamsSquared(), (0., DummyCost())]) model = DummyModel(shapes, lr_scalers=scales, init_type=model_type) if dataset_type == 'arange': dataset = ArangeDataset(1) elif dataset_type == 'zeros': X = np.zeros((1, 1)) X[:, 0] = np.arange(1) dataset = DenseDesignMatrix(X) else: raise ValueError('Unknown value for dataset_type: %s', dataset_type) sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=AdaGrad(), batch_size=1) sgd.setup(model=model, dataset=dataset) state = {} for param in model.get_params(): param_shape = param.get_value().shape state[param] = {} state[param]['sg2'] = np.zeros(param_shape) return (cost, model, dataset, sgd, state)
def prepare_adagrad_test(dataset_type='arange', model_type='random'): """ Factor out common code for AdaGrad tests. Parameters ---------- dataset_type : string, optional Can use either `arange` to use an ArangeDataset instance or `zeros` to create an all-zeros DenseDesignMatrix. model_type : string, optional How to initialize the model; `random` will initialize parameters to random values, `zeros` to zero. """ # We include a cost other than SumOfParams so that data is actually # queried from the training set, and the expected number of updates # are applied. cost = SumOfCosts([SumOfOneHalfParamsSquared(), (0., DummyCost())]) model = DummyModel(shapes, lr_scalers=scales, init_type=model_type) if dataset_type == 'arange': dataset = ArangeDataset(1) elif dataset_type == 'zeros': X = np.zeros((1, 1)) X[:, 0] = np.arange(1) dataset = DenseDesignMatrix(X) else: raise ValueError('Unknown value for dataset_type: %s', dataset_type) sgd = SGD(cost=cost, learning_rate=learning_rate, learning_rule=AdaGrad(), batch_size=1) sgd.setup(model=model, dataset=dataset) state = {} for param in model.get_params(): param_shape = param.get_value().shape state[param] = {} state[param]['sg2'] = np.zeros(param_shape) return (cost, model, dataset, sgd, state)
class SequenceTaggerNetwork(Model): def __init__(self, dataset, w2i, t2i, featurizer, edim=None, hdims=None, fedim=None, max_epochs=100, use_momentum=False, lr=.01, lr_lin_decay=None, lr_scale=False, lr_monitor_decay=False, valid_stop=False, reg_factors=None, dropout=False, dropout_params=None, embedding_init=None, embedded_model=None, monitor_train=True, plot_monitor=None, num=False): super(SequenceTaggerNetwork, self).__init__() self.vocab_size = dataset.vocab_size self.window_size = dataset.window_size self.total_feats = dataset.total_feats self.feat_num = dataset.feat_num self.n_classes = dataset.n_classes self.max_epochs = max_epochs if edim is None: edim = 50 if hdims is None: hdims = [100] if fedim is None: fedim = 5 self.edim = edim self.fedim = fedim self.hdims = hdims self.w2i = w2i self.t2i = t2i self.featurizer = featurizer self._create_tagger() A_value = numpy.random.uniform(low=-.1, high=.1, size=(self.n_classes + 2, self.n_classes)) self.A = sharedX(A_value, name='A') self.use_momentum = use_momentum self.lr = lr self.lr_lin_decay = lr_lin_decay self.lr_monitor_decay = lr_monitor_decay self.lr_scale = lr_scale self.valid_stop = valid_stop self.reg_factors = reg_factors self.close_cache = {} self.dropout_params = dropout_params self.dropout = dropout or self.dropout_params is not None self.hdims = hdims self.monitor_train = monitor_train self.num = num self.plot_monitor = plot_monitor if embedding_init is not None: self.set_embedding_weights(embedding_init) def _create_tagger(self): self.tagger = WordTaggerNetwork(self.vocab_size, self.window_size, self.total_feats, self.feat_num, self.hdims, self.edim, self.fedim, self.n_classes) def _create_data_specs(self, dataset): self.input_space = CompositeSpace([ dataset.data_specs[0].components[i] for i in xrange(len(dataset.data_specs[0].components) - 1) ]) self.output_space = dataset.data_specs[0].components[-1] self.input_source = dataset.data_specs[1][:-1] self.target_source = dataset.data_specs[1][-1] def __getstate__(self): d = {} d['vocab_size'] = self.vocab_size d['window_size'] = self.window_size d['feat_num'] = self.feat_num d['total_feats'] = self.total_feats d['n_classes'] = self.n_classes d['input_space'] = self.input_space d['output_space'] = self.output_space d['input_source'] = self.input_source d['target_source'] = self.target_source d['A'] = self.A d['tagger'] = self.tagger d['w2i'] = self.w2i d['t2i'] = self.t2i d['featurizer'] = self.featurizer d['max_epochs'] = self.max_epochs d['use_momentum'] = self.use_momentum d['lr'] = self.lr d['lr_lin_decay'] = self.lr_lin_decay d['lr_monitor_decay'] = self.lr_monitor_decay d['lr_scale'] = self.lr_scale d['valid_stop'] = self.valid_stop d['reg_factors'] = self.reg_factors d['dropout'] = self.dropout d['dropout_params'] = self.dropout_params d['monitor_train'] = self.monitor_train d['num'] = self.num d['plot_monitor'] = self.plot_monitor return d def fprop(self, data): tagger_out = self.tagger.fprop(data) probs = T.concatenate([self.A, tagger_out]) return probs def dropout_fprop(self, data, default_input_include_prob=0.5, input_include_probs=None, default_input_scale=2.0, input_scales=None, per_example=True): if input_scales is None: input_scales = {'input': 1.0} if input_include_probs is None: input_include_probs = {'input': 1.0} if self.dropout_params is not None: if len(self.dropout_params) == len(self.tagger.layers) - 1: input_include_probs['tagger_out'] = self.dropout_params[-1] input_scales['tagger_out'] = 1.0 / self.dropout_params[-1] for i, p in enumerate(self.dropout_params[:-1]): input_include_probs['h{0}'.format(i)] = p input_scales['h{0}'.format(i)] = 1.0 / p tagger_out = self.tagger.dropout_fprop(data, default_input_include_prob, input_include_probs, default_input_scale, input_scales, per_example) probs = T.concatenate([self.A, tagger_out]) return probs @functools.wraps(Model.get_lr_scalers) def get_lr_scalers(self): if not self.lr_scale: return {} d = self.tagger.get_lr_scalers() d[self.A] = 1. / self.n_classes return d @functools.wraps(Model.get_params) def get_params(self): return self.tagger.get_params() + [self.A] def create_adjustors(self): initial_momentum = .5 final_momentum = .99 start = 1 saturate = self.max_epochs self.momentum_adjustor = learning_rule.MomentumAdjustor( final_momentum, start, saturate) self.momentum_rule = learning_rule.Momentum(initial_momentum, nesterov_momentum=True) if self.lr_monitor_decay: self.learning_rate_adjustor = MonitorBasedLRAdjuster( high_trigger=1., shrink_amt=0.9, low_trigger=.95, grow_amt=1.1, channel_name='train_objective') elif self.lr_lin_decay: self.learning_rate_adjustor = LinearDecayOverEpoch( start, saturate, self.lr_lin_decay) def compute_used_inputs(self): seen = {'words': set(), 'feats': set()} for sen_w in self.dataset['train'].X1: seen['words'] |= reduce(lambda x, y: set(x) | set(y), sen_w, set()) for sen_f in self.dataset['train'].X2: seen['feats'] |= reduce(lambda x, y: set(x) | set(y), sen_f, set()) words = set(xrange(len(self.w2i))) feats = set(xrange(self.total_feats)) self.notseen = { 'words': numpy.array(sorted(words - seen['words'])), 'feats': numpy.array(sorted(feats - seen['feats'])) } def set_dataset(self, data): self._create_data_specs(data['train']) self.dataset = data self.compute_used_inputs() self.tagger.notseen = self.notseen def create_algorithm(self, data, save_best_path=None): self.set_dataset(data) self.create_adjustors() term = EpochCounter(max_epochs=self.max_epochs) if self.valid_stop: cost_crit = MonitorBased(channel_name='valid_objective', prop_decrease=.0, N=3) term = And(criteria=[cost_crit, term]) #(layers, A_weight_decay) coeffs = None if self.reg_factors: rf = self.reg_factors lhdims = len(self.tagger.hdims) l_inputlayer = len(self.tagger.layers[0].layers) coeffs = ([[rf] * l_inputlayer] + ([rf] * lhdims) + [rf], rf) cost = SeqTaggerCost(coeffs, self.dropout) self.cost = cost self.mbsb = MonitorBasedSaveBest(channel_name='valid_objective', save_path=save_best_path) mon_dataset = dict(self.dataset) if not self.monitor_train: del mon_dataset['train'] _learning_rule = (self.momentum_rule if self.use_momentum else None) self.algorithm = SGD( batch_size=1, learning_rate=self.lr, termination_criterion=term, monitoring_dataset=mon_dataset, cost=cost, learning_rule=_learning_rule, ) self.algorithm.setup(self, self.dataset['train']) if self.plot_monitor: cn = ["valid_objective", "test_objective"] if self.monitor_train: cn.append("train_objective") plots = Plots(channel_names=cn, save_path=self.plot_monitor) self.pm = PlotManager([plots], freq=1) self.pm.setup(self, None, self.algorithm) def train(self): while True: if not self.algorithm.continue_learning(self): break self.algorithm.train(dataset=self.dataset['train']) self.monitor.report_epoch() self.monitor() self.mbsb.on_monitor(self, self.dataset['valid'], self.algorithm) if self.use_momentum: self.momentum_adjustor.on_monitor(self, self.dataset['valid'], self.algorithm) if hasattr(self, 'learning_rate_adjustor'): self.learning_rate_adjustor.on_monitor(self, self.dataset['valid'], self.algorithm) if hasattr(self, 'pm'): self.pm.on_monitor(self, self.dataset['valid'], self.algorithm) def prepare_tagging(self): X = self.get_input_space().make_theano_batch(batch_size=1) Y = self.fprop(X) self.f = theano.function([X[0], X[1]], Y) self.start = self.A.get_value()[0] self.end = self.A.get_value()[1] self.A_value = self.A.get_value()[2:] def process_input(self, words, feats): return self.f(words, feats) def tag_sen(self, words, feats, debug=False, return_probs=False): if not hasattr(self, 'f'): self.prepare_tagging() y = self.process_input(words, feats) tagger_out = y[2 + self.n_classes:] res = viterbi(self.start, self.A_value, self.end, tagger_out, self.n_classes, return_probs) if return_probs: return res / res.sum(axis=1)[:, numpy.newaxis] #return res.reshape((1, len(res))) if debug: return numpy.array([[e] for e in res[1]]), tagger_out return numpy.array([[e] for e in res[1]]) def get_score(self, dataset, mode='pwp'): self.prepare_tagging() tagged = (self.tag_sen(w, f) for w, f in izip(dataset.X1, dataset.X2)) gold = dataset.y good, bad = 0., 0. if mode == 'pwp': for t, g in izip(tagged, gold): g = g.argmax(axis=1) t = t.flatten() good += sum(t == g) bad += sum(t != g) return [good / (good + bad)] elif mode == 'f1': i2t = [t for t, i in sorted(self.t2i.items(), key=lambda x: x[1])] f1c = FScCounter(i2t, binary_input=False) gold = map(lambda x: x.argmax(axis=1), gold) tagged = map(lambda x: x.flatten(), tagged) return f1c.count_score(gold, tagged) def set_embedding_weights(self, embedding_init): # load embedding with gensim from gensim.models import Word2Vec try: m = Word2Vec.load_word2vec_format(embedding_init, binary=False) edim = m.layer1_size except UnicodeDecodeError: try: m = Word2Vec.load_word2vec_format(embedding_init, binary=True) edim = m.layer1_size except UnicodeDecodeError: # not in word2vec format m = Word2Vec.load(embedding_init) edim = m.layer1_size except ValueError: # glove model m = {} if embedding_init.endswith('gz'): fp = gzip.open(embedding_init) else: fp = open(embedding_init) for l in fp: le = l.split() m[le[0].decode('utf-8')] = numpy.array( [float(e) for e in le[1:]], dtype=theano.config.floatX) edim = len(le) - 1 if edim != self.edim: raise Exception("Embedding dim and edim doesn't match") m_lower = {} vocab = (m.vocab if hasattr(m, 'vocab') else m) for k in vocab: if k in ['UNKNOWN', 'PADDING']: continue if self.num: m_lower[replace_numerals(k.lower())] = m[k] else: m_lower[k.lower()] = m[k] # transform weight matrix with using self.w2i params = numpy.zeros( self.tagger.layers[0].layers[0].get_param_vector().shape, dtype=theano.config.floatX) e = self.edim for w in self.w2i: if w in m_lower: v = m_lower[w] i = self.w2i[w] params[i * e:(i + 1) * e] = v if 'UNKNOWN' in vocab: params[-1 * e:] = vocab['UNKNOWN'] if 'PADDING' in vocab: params[-2 * e:-1 * e] = vocab['PADDING'] self.tagger.layers[0].layers[0].set_param_vector(params)
max_col_norm = 1.9365, layer_name = 'y', n_classes = 7, istdev = .05 ) layers = [layer0, layer1, layer3] #layers = [layer0, layer2, layer3] ann = MLP(layers, input_space=ishape) t_algo = SGD(learning_rate = 1e-1, batch_size = 100, batches_per_iter = 1, termination_criterion=EpochCounter(2) ) ds = DataPylearn2([train_set_x,train_set_y],[48,48,1],7) t_algo.setup(ann, ds) while True: t_algo.train(dataset=ds) ann.monitor.report_epoch() ann.monitor() if not t_algo.continue_learning(ann): break # test: https://github.com/lisa-lab/pylearn2/blob/master/pylearn2/scripts/icml_2013_wrepl/emotions/make_submission.py ds2 = DataPylearn2([test_set_x,test_set_y],[48,48,1],-1) m = ds2.X.shape[0] batch_size = 100 extra = (batch_size - m % batch_size) % batch_size assert (m + extra) % batch_size == 0 if extra > 0:
import theano import numpy as np n = 200 p = 2 X = np.random.normal(0, 1, (n, p)) y = X[:,0]* X[:, 1] + np.random.normal(0, .1, n) y.shape = (n, 1) ds = DenseDesignMatrix(X=X, y=y) hidden_layer = Sigmoid(layer_name='hidden', dim=10, irange=.1, init_bias=1.) output_layer = Linear(dim=1, layer_name='y', irange=.1) trainer = SGD(learning_rate=.05, batch_size=10, termination_criterion=EpochCounter(200)) layers = [hidden_layer, output_layer] ann = MLP(layers, nvis=2) trainer.setup(ann, ds) while True: trainer.train(dataset=ds) ann.monitor.report_epoch() ann.monitor() if not trainer.continue_learning(ann): break inputs = X y_est = ann.fprop(theano.shared(inputs, name='inputs')).eval() print(y_est.shape)
def create_algorithm(mlp, train_set): rng = RandomState(hash('tobipuma') % 4294967295) algorithm = SGD(batch_size=20, learning_rate=0.1) algorithm.rng = rng #try to always have same results for algorithm algorithm.setup(mlp, train_set) return algorithm
def runDeepLearning2(): ### Loading training set and separting it into training set and testing set myDataset = Dataset("/home/Stephen/Desktop/Bird/DLearn/Data/Emotion_small/") preprocess = 0 datasets = myDataset.loadTrain(preprocessFLAG=preprocess, flipFLAG=3) train_set_x, train_set_y = datasets[0] valid_set_x, valid_set_y = datasets[1] dataset_test = myDataset.loadTest(preprocess) test_set_x, test_set_y, test_set_y_array = dataset_test[0] # temporary solution to get the ground truth of sample out to test_set_y_array. # the reason is that after T.cast, test_set_y becomes TensorVariable, which I do not find way to output its # value...anyone can help? ### Model parameterso """ learning_rate = 0.02 n_epochs = 3000 nkerns=[30, 40, 40] # number of kernal at each layer, current best performance is 50.0% on testing set, kernal number is [30,40,40] batch_size = 500 # compute number of minibatches for training, validation and testing n_train_batches = train_set_x.get_value(borrow=True).shape[0] n_valid_batches = valid_set_x.get_value(borrow=True).shape[0] n_test_batches = test_set_x.get_value(borrow=True).shape[0] n_train_batches /= batch_size n_valid_batches /= batch_size n_test_batches /= batch_size # allocate symbolic variables for the data index = T.lscalar() # index to a [mini]batch x = T.matrix('x') # the data is presented as rasterized images y = T.ivector('y') # the labels are presented as 1D vector of # [int] labels ishape = (48, 48) # size of input images nClass = 7 """ rng = np.random.RandomState(23455) # Import yaml file that specifies the model to train # conv layer layer0 = ConvRectifiedLinear( layer_name="h2", output_channels=64, irange=0.05, kernel_shape=[8, 8], pool_shape=[4, 4], pool_stride=[2, 2], max_kernel_norm=0.9, ) # mlp layer2 = RectifiedLinear(layer_name="h1", dim=1000, sparse_init=15) # softmax layer3 = Softmax(max_col_norm=1.9365, layer_name="y", n_classes=7, istdev=0.05) ds = Dataset2(train_set_x, train_set_y) layers = [layer0, layer2, layer3] ann = mlp.MLP(layers, nvis=3) t_algo = SGD(learning_rate=1e-1, batch_size=500, termination_criterion=EpochCounter(400)) t_algo.setup(ann, ds) while True: trainer.train(dataset=ds) ann.monitor.report_epoch() ann.monitor() if not trainer.continue_learning(ann): break
def create_algorithm(mlp, train_set): rng = RandomState(hash('tobipuma') % 4294967295) algorithm = SGD(batch_size=20, learning_rate=0.1) algorithm.rng = rng #try to always have same results for algorithm algorithm.setup(mlp, train_set) return algorithm
class SequenceTaggerNetwork(Model): def __init__(self, dataset, w2i, t2i, featurizer, edim=None, hdims=None, fedim=None, max_epochs=100, use_momentum=False, lr=.01, lr_lin_decay=None, lr_scale=False, lr_monitor_decay=False, valid_stop=False, reg_factors=None, dropout=False, dropout_params=None, embedding_init=None, embedded_model=None, monitor_train=True, plot_monitor=None, num=False): super(SequenceTaggerNetwork, self).__init__() self.vocab_size = dataset.vocab_size self.window_size = dataset.window_size self.total_feats = dataset.total_feats self.feat_num = dataset.feat_num self.n_classes = dataset.n_classes self.max_epochs = max_epochs if edim is None: edim = 50 if hdims is None: hdims = [100] if fedim is None: fedim = 5 self.edim = edim self.fedim = fedim self.hdims = hdims self.w2i = w2i self.t2i = t2i self.featurizer = featurizer self._create_tagger() A_value = numpy.random.uniform(low=-.1, high=.1, size=(self.n_classes + 2, self.n_classes)) self.A = sharedX(A_value, name='A') self.use_momentum = use_momentum self.lr = lr self.lr_lin_decay = lr_lin_decay self.lr_monitor_decay = lr_monitor_decay self.lr_scale = lr_scale self.valid_stop = valid_stop self.reg_factors = reg_factors self.close_cache = {} self.dropout_params = dropout_params self.dropout = dropout or self.dropout_params is not None self.hdims = hdims self.monitor_train = monitor_train self.num = num self.plot_monitor = plot_monitor if embedding_init is not None: self.set_embedding_weights(embedding_init) def _create_tagger(self): self.tagger = WordTaggerNetwork( self.vocab_size, self.window_size, self.total_feats, self.feat_num, self.hdims, self.edim, self.fedim, self.n_classes) def _create_data_specs(self, dataset): self.input_space = CompositeSpace([ dataset.data_specs[0].components[i] for i in xrange(len(dataset.data_specs[0].components) - 1)]) self.output_space = dataset.data_specs[0].components[-1] self.input_source = dataset.data_specs[1][:-1] self.target_source = dataset.data_specs[1][-1] def __getstate__(self): d = {} d['vocab_size'] = self.vocab_size d['window_size'] = self.window_size d['feat_num'] = self.feat_num d['total_feats'] = self.total_feats d['n_classes'] = self.n_classes d['input_space'] = self.input_space d['output_space'] = self.output_space d['input_source'] = self.input_source d['target_source'] = self.target_source d['A'] = self.A d['tagger'] = self.tagger d['w2i'] = self.w2i d['t2i'] = self.t2i d['featurizer'] = self.featurizer d['max_epochs'] = self.max_epochs d['use_momentum'] = self.use_momentum d['lr'] = self.lr d['lr_lin_decay'] = self.lr_lin_decay d['lr_monitor_decay'] = self.lr_monitor_decay d['lr_scale'] = self.lr_scale d['valid_stop'] = self.valid_stop d['reg_factors'] = self.reg_factors d['dropout'] = self.dropout d['dropout_params'] = self.dropout_params d['monitor_train'] = self.monitor_train d['num'] = self.num d['plot_monitor'] = self.plot_monitor return d def fprop(self, data): tagger_out = self.tagger.fprop(data) probs = T.concatenate([self.A, tagger_out]) return probs def dropout_fprop(self, data, default_input_include_prob=0.5, input_include_probs=None, default_input_scale=2.0, input_scales=None, per_example=True): if input_scales is None: input_scales = {'input': 1.0} if input_include_probs is None: input_include_probs = {'input': 1.0} if self.dropout_params is not None: if len(self.dropout_params) == len(self.tagger.layers) - 1: input_include_probs['tagger_out'] = self.dropout_params[-1] input_scales['tagger_out'] = 1.0/self.dropout_params[-1] for i, p in enumerate(self.dropout_params[:-1]): input_include_probs['h{0}'.format(i)] = p input_scales['h{0}'.format(i)] = 1.0/p tagger_out = self.tagger.dropout_fprop( data, default_input_include_prob, input_include_probs, default_input_scale, input_scales, per_example) probs = T.concatenate([self.A, tagger_out]) return probs @functools.wraps(Model.get_lr_scalers) def get_lr_scalers(self): if not self.lr_scale: return {} d = self.tagger.get_lr_scalers() d[self.A] = 1. / self.n_classes return d @functools.wraps(Model.get_params) def get_params(self): return self.tagger.get_params() + [self.A] def create_adjustors(self): initial_momentum = .5 final_momentum = .99 start = 1 saturate = self.max_epochs self.momentum_adjustor = learning_rule.MomentumAdjustor( final_momentum, start, saturate) self.momentum_rule = learning_rule.Momentum(initial_momentum, nesterov_momentum=True) if self.lr_monitor_decay: self.learning_rate_adjustor = MonitorBasedLRAdjuster( high_trigger=1., shrink_amt=0.9, low_trigger=.95, grow_amt=1.1, channel_name='train_objective') elif self.lr_lin_decay: self.learning_rate_adjustor = LinearDecayOverEpoch( start, saturate, self.lr_lin_decay) def compute_used_inputs(self): seen = {'words': set(), 'feats': set()} for sen_w in self.dataset['train'].X1: seen['words'] |= reduce( lambda x, y: set(x) | set(y), sen_w, set()) for sen_f in self.dataset['train'].X2: seen['feats'] |= reduce( lambda x, y: set(x) | set(y), sen_f, set()) words = set(xrange(len(self.w2i))) feats = set(xrange(self.total_feats)) self.notseen = { 'words': numpy.array(sorted(words - seen['words'])), 'feats': numpy.array(sorted(feats - seen['feats'])) } def set_dataset(self, data): self._create_data_specs(data['train']) self.dataset = data self.compute_used_inputs() self.tagger.notseen = self.notseen def create_algorithm(self, data, save_best_path=None): self.set_dataset(data) self.create_adjustors() term = EpochCounter(max_epochs=self.max_epochs) if self.valid_stop: cost_crit = MonitorBased(channel_name='valid_objective', prop_decrease=.0, N=3) term = And(criteria=[cost_crit, term]) #(layers, A_weight_decay) coeffs = None if self.reg_factors: rf = self.reg_factors lhdims = len(self.tagger.hdims) l_inputlayer = len(self.tagger.layers[0].layers) coeffs = ([[rf] * l_inputlayer] + ([rf] * lhdims) + [rf], rf) cost = SeqTaggerCost(coeffs, self.dropout) self.cost = cost self.mbsb = MonitorBasedSaveBest(channel_name='valid_objective', save_path=save_best_path) mon_dataset = dict(self.dataset) if not self.monitor_train: del mon_dataset['train'] _learning_rule = (self.momentum_rule if self.use_momentum else None) self.algorithm = SGD(batch_size=1, learning_rate=self.lr, termination_criterion=term, monitoring_dataset=mon_dataset, cost=cost, learning_rule=_learning_rule, ) self.algorithm.setup(self, self.dataset['train']) if self.plot_monitor: cn = ["valid_objective", "test_objective"] if self.monitor_train: cn.append("train_objective") plots = Plots(channel_names=cn, save_path=self.plot_monitor) self.pm = PlotManager([plots], freq=1) self.pm.setup(self, None, self.algorithm) def train(self): while True: if not self.algorithm.continue_learning(self): break self.algorithm.train(dataset=self.dataset['train']) self.monitor.report_epoch() self.monitor() self.mbsb.on_monitor(self, self.dataset['valid'], self.algorithm) if self.use_momentum: self.momentum_adjustor.on_monitor(self, self.dataset['valid'], self.algorithm) if hasattr(self, 'learning_rate_adjustor'): self.learning_rate_adjustor.on_monitor( self, self.dataset['valid'], self.algorithm) if hasattr(self, 'pm'): self.pm.on_monitor( self, self.dataset['valid'], self.algorithm) def prepare_tagging(self): X = self.get_input_space().make_theano_batch(batch_size=1) Y = self.fprop(X) self.f = theano.function([X[0], X[1]], Y) self.start = self.A.get_value()[0] self.end = self.A.get_value()[1] self.A_value = self.A.get_value()[2:] def process_input(self, words, feats): return self.f(words, feats) def tag_sen(self, words, feats, debug=False, return_probs=False): if not hasattr(self, 'f'): self.prepare_tagging() y = self.process_input(words, feats) tagger_out = y[2 + self.n_classes:] res = viterbi(self.start, self.A_value, self.end, tagger_out, self.n_classes, return_probs) if return_probs: return res / res.sum(axis=1)[:,numpy.newaxis] #return res.reshape((1, len(res))) if debug: return numpy.array([[e] for e in res[1]]), tagger_out return numpy.array([[e] for e in res[1]]) def get_score(self, dataset, mode='pwp'): self.prepare_tagging() tagged = (self.tag_sen(w, f) for w, f in izip(dataset.X1, dataset.X2)) gold = dataset.y good, bad = 0., 0. if mode == 'pwp': for t, g in izip(tagged, gold): g = g.argmax(axis=1) t = t.flatten() good += sum(t == g) bad += sum(t != g) return [good / (good + bad)] elif mode == 'f1': i2t = [t for t, i in sorted(self.t2i.items(), key=lambda x: x[1])] f1c = FScCounter(i2t, binary_input=False) gold = map(lambda x:x.argmax(axis=1), gold) tagged = map(lambda x:x.flatten(), tagged) return f1c.count_score(gold, tagged) def set_embedding_weights(self, embedding_init): # load embedding with gensim from gensim.models import Word2Vec try: m = Word2Vec.load_word2vec_format(embedding_init, binary=False) edim = m.layer1_size except UnicodeDecodeError: try: m = Word2Vec.load_word2vec_format(embedding_init, binary=True) edim = m.layer1_size except UnicodeDecodeError: # not in word2vec format m = Word2Vec.load(embedding_init) edim = m.layer1_size except ValueError: # glove model m = {} if embedding_init.endswith('gz'): fp = gzip.open(embedding_init) else: fp = open(embedding_init) for l in fp: le = l.split() m[le[0].decode('utf-8')] = numpy.array( [float(e) for e in le[1:]], dtype=theano.config.floatX) edim = len(le) - 1 if edim != self.edim: raise Exception("Embedding dim and edim doesn't match") m_lower = {} vocab = (m.vocab if hasattr(m, 'vocab') else m) for k in vocab: if k in ['UNKNOWN', 'PADDING']: continue if self.num: m_lower[replace_numerals(k.lower())] = m[k] else: m_lower[k.lower()] = m[k] # transform weight matrix with using self.w2i params = numpy.zeros( self.tagger.layers[0].layers[0].get_param_vector().shape, dtype=theano.config.floatX) e = self.edim for w in self.w2i: if w in m_lower: v = m_lower[w] i = self.w2i[w] params[i*e:(i+1)*e] = v if 'UNKNOWN' in vocab: params[-1*e:] = vocab['UNKNOWN'] if 'PADDING' in vocab: params[-2*e:-1*e] = vocab['PADDING'] self.tagger.layers[0].layers[0].set_param_vector(params)