def __init__(self, input):
if isinstance(input, dict):
input_to_file = input
conservative_update(self, input_to_file)
# self.__dict__.update(input_to_file)
elif hasattr(input, '__iter__'):
input_to_file = input
else: # Modules, objects, etc.
input_to_file = input.__dict__
conservative_update(self, input_to_file)
# self.__dict__.update(input_to_file)
dictpop = copy(self.__dict__)
if dictpop.has_key('self'):
dictpop.pop('self')
self._dict_container = DictContainer(dictpop)
file_items(self, input_to_file)
self._value = copy(self)
ContainerBase.__init__(self, input)
self.OCValue = OCValue(self)
class ComponentBase(ContainerBase):
"""
Base class which other components inherit from.
Significant portions are adapted from pymc.Container.ObjectContainer.
(__init__, replace, value)
"""
_fits_abbrs = []
def __init__(self):
dictpop = copy(self.__dict__)
if 'self' in dictpop:
dictpop.pop('self')
self._dict_container = DictContainer(dictpop)
file_items(self, dictpop)
self._value = copy(self)
super(ComponentBase, self).__init__(self)
self.OCValue = OCValue(self)
def update_trace_names(self, count=None):
"""
Set trace names based on component number, type, and attribute name
Also add abbreviated 'fitsname' attribute to individual stochastics
"""
comptype = self.__class__.__name__
for attr in self.__dict__:
newname = '{}_{}'.format(comptype, attr)
fitsname = newname
for longname, abbr in self.__class__._fits_abbrs:
fitsname = fitsname.replace(longname, abbr)
if count is not None:
newname = '{:d}_{}'.format(count, newname)
fitsname = '{:d}{}'.format(count, fitsname)
try:
self.__dict__[attr].__name__ = newname
self.__dict__[attr].fitsname = fitsname
except AttributeError:
pass
def replace(self, item, new_container, key):
dict.__setitem__(self.__dict__, key, new_container)
def _get_value(self):
self.OCValue.run()
return self._value
value = property(fget=_get_value,
doc='Copy of object with stochastics replaced by values')
def __init__(self, input):
if isinstance(input, dict):
input_to_file = input
conservative_update(self, input_to_file)
# self.__dict__.update(input_to_file)
elif hasattr(input,'__iter__'):
input_to_file = input
else: # Modules, objects, etc.
input_to_file = input.__dict__
conservative_update(self, input_to_file)
# self.__dict__.update(input_to_file)
dictpop = copy(self.__dict__)
if dictpop.has_key('self'):
dictpop.pop('self')
self._dict_container = DictContainer(dictpop)
file_items(self, input_to_file)
self._value = copy(self)
ContainerBase.__init__(self, input)
self.OCValue = OCValue(self)
def __init__(self, input):
if isinstance(input, dict):
input_to_file = input
self.__dict__.update(input_to_file)
elif hasattr(input, '__iter__'):
input_to_file = input
else: # Modules, objects, etc.
input_to_file = input.__dict__
self.__dict__.update(input_to_file)
self._dict_container = DictContainer(self.__dict__)
file_items(self, input_to_file)
self._value = copy(self)
ContainerBase.__init__(self, input)
self.OCValue = OCValue(self)
def __init__(self):
dictpop = copy(self.__dict__)
if 'self' in dictpop:
dictpop.pop('self')
self._dict_container = DictContainer(dictpop)
file_items(self, dictpop)
self._value = copy(self)
super(ComponentBase, self).__init__(self)
self.OCValue = OCValue(self)
class ObjectContainer(ContainerBase):
"""
ObjectContainers wrap non-iterable objects.
Contents of the input iterable, or attributes of the input object,
are exposed as attributes of the object.
:Parameters:
iterable : dictionary or object with a __dict__.
:Attributes:
value : object
A copy of self, with all variables replaced with their values.
nodes : set
All the stochastics, deterministics and potentials self contains.
deterministics : set
All the deterministics self contains.
stochastics : set
All the stochastics self contains with observed=False.
potentials : set
All the potentials self contains.
observed_stochastics : set
All the stochastics self contains with observed=True.
containers : list
All the containers self contains.
:Note:
- nodes, deterministics, etc. include all the objects in nested
containers.
- value replaces objects in nested containers.
:SeeAlso:
Container, ListContainer, DictContainer, ArrayContainer, SetContainer,
TupleContainer
"""
register=False
def __init__(self, input):
if isinstance(input, dict):
input_to_file = input
conservative_update(self, input_to_file)
# self.__dict__.update(input_to_file)
elif hasattr(input,'__iter__'):
input_to_file = input
else: # Modules, objects, etc.
input_to_file = input.__dict__
conservative_update(self, input_to_file)
# self.__dict__.update(input_to_file)
dictpop = copy(self.__dict__)
if dictpop.has_key('self'):
dictpop.pop('self')
self._dict_container = DictContainer(dictpop)
file_items(self, input_to_file)
self._value = copy(self)
ContainerBase.__init__(self, input)
self.OCValue = OCValue(self)
def replace(self, item, new_container, key):
dict.__setitem__(self.__dict__, key, new_container)
def _get_value(self):
self.OCValue.run()
return self._value
value = property(fget = _get_value, doc=value_doc)
class ObjectContainer(ContainerBase):
"""
ObjectContainers wrap non-iterable objects.
Contents of the input iterable, or attributes of the input object,
are exposed as attributes of the object.
:Parameters:
iterable : dictionary or object with a __dict__.
:Attributes:
value : object
A copy of self, with all variables replaced with their values.
nodes : set
All the stochastics, deterministics and potentials self contains.
deterministics : set
All the deterministics self contains.
stochastics : set
All the stochastics self contains with observed=False.
potentials : set
All the potentials self contains.
observed_stochastics : set
All the stochastics self contains with observed=True.
containers : list
All the containers self contains.
:Note:
- nodes, deterministics, etc. include all the objects in nested
containers.
- value replaces objects in nested containers.
:SeeAlso:
Container, ListContainer, DictContainer, ArrayContainer, SetContainer,
TupleContainer
"""
register = False
def __init__(self, input):
if isinstance(input, dict):
input_to_file = input
self.__dict__.update(input_to_file)
elif hasattr(input, '__iter__'):
input_to_file = input
else: # Modules, objects, etc.
input_to_file = input.__dict__
self.__dict__.update(input_to_file)
self._dict_container = DictContainer(self.__dict__)
file_items(self, input_to_file)
self._value = copy(self)
ContainerBase.__init__(self, input)
self.OCValue = OCValue(self)
def replace(self, item, new_container, key):
dict.__setitem__(self.__dict__, key, new_container)
def _get_value(self):
self.OCValue.run()
return self._value
value = property(fget=_get_value, doc=value_doc)
