def __init__(self, pid_controller):
super().__init__(pid_controller)
self.running = False
self.det_done_flag = False
self.move_done_flag = False
self.timeout_scan_flag = False
self.curr_time = time.perf_counter()
self.lsqe = LSqEllipse()
self.phases = np.zeros((100, ))
self.curr_phase = 0
self.curr_position = 0
self.dock_calib = Dock('Calibration')
widget_calib = QtWidgets.QWidget()
self.viewer_calib = Viewer1D(widget_calib)
widget_ellipse = QtWidgets.QWidget()
self.viewer_ellipse = Viewer1D(widget_ellipse)
self.viewer_ellipse.show_data([np.zeros((10, )), np.zeros((10, ))])
self.dock_calib.addWidget(widget_calib)
self.dock_calib.addWidget(widget_ellipse, row=0, col=1)
self.pid_controller.dock_area.addDock(self.dock_calib)
self.dock_calib.float()
self.timer = QTimer()
self.timer.setSingleShot(True)
self.timer.timeout.connect(self.timeout)
def setupUI(self):
horlayout = QtWidgets.QHBoxLayout()
splitter = QtWidgets.QSplitter(Qt.Horizontal)
self.setLayout(horlayout)
horlayout.addWidget(splitter)
tab = QtWidgets.QTabWidget()
form = QtWidgets.QWidget()
self.viewer_data = Viewer1D(form)
self.plot_peak_item = self.viewer_data.viewer.plotwidget.plot()
form1 = QtWidgets.QWidget()
self.viewer_calib = Viewer1D(form1)
self.viewer_calib.set_axis_label(axis_settings=dict(
orientation='left', label='Photon wavelength', units='nm'))
tab.addTab(form, 'Data Viewer')
tab.addTab(form1, 'Calibration')
splitter.addWidget(tab)
self.settings = Parameter.create(name='settings',
type='group',
children=self.params)
self.settings.sigTreeStateChanged.connect(self.parameter_tree_changed)
self.settings_tree = ParameterTree()
self.settings_tree.setMinimumWidth(300)
self.settings_tree.setParameters(self.settings, showTop=False)
splitter.addWidget(self.settings_tree)
# creating a toolbar
self.toolbar = QtWidgets.QToolBar()
self.create_toolbar()
self.window.addToolBar(self.toolbar)
def setup_spread_UI(self):
self.ui.spread_widget = QtWidgets.QWidget()
self.ui.spread_widget.setLayout(QtWidgets.QVBoxLayout())
widget1D = QtWidgets.QWidget()
widget2D = QtWidgets.QWidget()
self.ui.spread_viewer_1D = Viewer1D(widget1D)
self.ui.spread_viewer_2D = Viewer2D(widget2D)
self.ui.spread_widget.layout().addWidget(widget1D)
self.ui.spread_widget.layout().addWidget(widget2D)
# todo: better connection as discussed
self.ui.spread_viewer_1D.ui.crosshair.crosshair_dragged.connect(self.get_nav_position)
self.ui.spread_viewer_1D.ui.crosshair_pb.click()
self.ui.spread_viewer_2D.ui.auto_levels_pb.click()
#todo: better connection as discussed
self.ui.spread_viewer_2D.crosshair_dragged.connect(self.get_nav_position)
self.ui.spread_viewer_2D.ui.crosshair_pb.click()
self.ui.spread_widget.show()
self.ui.spread_widget.setVisible(False)
def set_GUI(self):
"""
"""
#%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
#main_layout = QtWidgets.QGridLayout()
#self.area.setLayout(main_layout)
#vsplitter = QtWidgets.QSplitter(Qt.Vertical)
# Hsplitter=QtWidgets.QSplitter(Qt.Horizontal)
params = [
{'title': 'set data:', 'name': 'set_data_4D', 'type': 'action', 'visible': False},
{'title': 'set data:', 'name': 'set_data_3D', 'type': 'action', 'visible': False},
{'title': 'set data:', 'name': 'set_data_2D', 'type': 'action', 'visible': False},
{'title': 'set data:', 'name': 'set_data_1D', 'type': 'action', 'visible': False},
{'title': 'Signal shape', 'name': 'data_shape_settings', 'type': 'group', 'children': [
{'title': 'Initial Data shape:', 'name': 'data_shape_init', 'type': 'str', 'value': "",
'readonly': True},
{'title': 'Axes shape:', 'name': 'nav_axes_shapes', 'type': 'group', 'children': [],
'readonly': True},
{'title': 'Data shape:', 'name': 'data_shape', 'type': 'str', 'value': "", 'readonly': True},
{'title': 'Navigator axes:', 'name': 'navigator_axes', 'type': 'itemselect'},
{'title': 'Set Nav axes:', 'name': 'set_nav_axes', 'type': 'action', 'visible': True},
]},
]
self.settings = Parameter.create(name='Param', type='group', children=params)
##self.signal_axes_selection()
# connecting from tree
self.settings.sigTreeStateChanged.connect(self.parameter_tree_changed) # any changes on the settings
self.settings.child(('set_data_1D')).sigActivated.connect(lambda: self.set_data_test('1D'))
self.settings.child(('set_data_2D')).sigActivated.connect(lambda: self.set_data_test('2D'))
self.settings.child(('set_data_3D')).sigActivated.connect(lambda: self.set_data_test('3D'))
self.settings.child(('set_data_4D')).sigActivated.connect(lambda: self.set_data_test('4D'))
self.settings.child('data_shape_settings', 'set_nav_axes').sigActivated.connect(self.update_data)
##%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
##% 1D signalviewer
viewer1D_widget = QtWidgets.QWidget()
self.ui.viewer1D = Viewer1D(viewer1D_widget)
self.ROI1D = LinearRegionItem()
self.ui.viewer1D.viewer.plotwidget.plotItem.addItem(self.ROI1D)
self.ui.combomath = QtWidgets.QComboBox()
self.ui.combomath.addItems(['Sum', 'Mean', 'Half-life'])
self.ui.viewer1D.ui.button_widget.layout().insertWidget(4, self.ui.combomath)
self.ui.combomath.currentIndexChanged.connect(self.update_Navigator)
self.ROI1D.sigRegionChangeFinished.connect(self.update_Navigator)
# % 2D viewer Dock
viewer2D_widget = QtWidgets.QWidget()
self.ui.viewer2D = Viewer2D(viewer2D_widget)
self.ui.viewer2D.ui.Ini_plot_pb.setVisible(False)
self.ui.viewer2D.ui.FlipUD_pb.setVisible(False)
self.ui.viewer2D.ui.FlipLR_pb.setVisible(False)
self.ui.viewer2D.ui.rotate_pb.setVisible(False)
self.ui.viewer2D.ui.auto_levels_pb.click()
self.ui.viewer2D.ui.ROIselect_pb.click()
self.ROI2D = self.ui.viewer2D.ui.ROIselect
self.ui.viewer2D.ROI_select_signal.connect(self.update_Navigator)
dock_signal = Dock('Signal')
dock_signal.addWidget(viewer1D_widget)
dock_signal.addWidget(viewer2D_widget)
##%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
##% Navigator viewer Dock
navigator1D_widget = QtWidgets.QWidget()
self.ui.navigator1D = Viewer1D(navigator1D_widget)
self.ui.navigator1D.ui.crosshair.crosshair_dragged.connect(self.update_viewer_data)
self.ui.navigator1D.ui.crosshair_pb.click()
self.ui.navigator1D.data_to_export_signal.connect(self.export_data)
navigator2D_widget = QtWidgets.QWidget()
self.ui.navigator2D = Viewer2D(navigator2D_widget)
self.ui.navigator2D.ui.auto_levels_pb.click()
self.ui.navigator2D.crosshair_dragged.connect(
self.update_viewer_data) # export scaled position in conjonction with 2D scaled axes
self.ui.navigator2D.ui.crosshair_pb.click()
self.ui.navigator2D.data_to_export_signal.connect(self.export_data)
self.ui.navigation_widget = QtWidgets.QWidget()
# vlayout_navigation = QtWidgets.QVBoxLayout()
# self.navigator_label = QtWidgets.QLabel('Navigation View')
# self.navigator_label.setMaximumHeight(15)
#layout_navigation.addWidget(self.navigator_label)
self.ui.nav_axes_widget = QtWidgets.QWidget()
self.ui.nav_axes_widget.setLayout(QtWidgets.QVBoxLayout())
#vlayout_navigation.addWidget(navigator2D_widget)
#vlayout_navigation.addWidget(self.ui.nav_axes_widget)
self.ui.nav_axes_widget.setVisible(False)
#vlayout_navigation.addWidget(navigator1D_widget)
#self.ui.navigation_widget.setLayout(vlayout_navigation)
#vsplitter.insertWidget(0, self.ui.navigation_widget)
dock_navigation = Dock('Navigation')
dock_navigation.addWidget(navigator1D_widget)
dock_navigation.addWidget(navigator2D_widget)
self.area.addDock(dock_navigation)
self.area.addDock(dock_signal, 'right', dock_navigation)
# self.ui.signal_widget = QtWidgets.QWidget()
# VLayout1 = QtWidgets.QVBoxLayout()
# self.viewer_label = QtWidgets.QLabel('Data View')
# self.viewer_label.setMaximumHeight(15)
# VLayout1.addWidget(self.viewer_label)
# VLayout1.addWidget(viewer1D_widget)
# VLayout1.addWidget(viewer2D_widget)
# self.ui.signal_widget.setLayout(VLayout1)
#vsplitter.insertWidget(1, self.ui.signal_widget)
icon = QtGui.QIcon()
icon.addPixmap(QtGui.QPixmap(":/icons/Icon_Library/cartesian.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.ui.set_signals_pb_1D = QtWidgets.QPushButton('')
self.ui.set_signals_pb_1D.setToolTip('Change navigation/signal axes')
self.ui.set_signals_pb_1D_bis = QtWidgets.QPushButton('')
self.ui.set_signals_pb_1D_bis.setToolTip('Change navigation/signal axes')
self.ui.set_signals_pb_1D.setIcon(icon)
self.ui.set_signals_pb_1D_bis.setIcon(icon)
self.ui.set_signals_pb_2D = QtWidgets.QPushButton('')
self.ui.set_signals_pb_2D.setToolTip('Change navigation/signal axes')
self.ui.set_signals_pb_2D.setIcon(icon)
self.ui.set_signals_pb_2D_bis = QtWidgets.QPushButton('')
self.ui.set_signals_pb_2D_bis.setToolTip('Change navigation/signal axes')
self.ui.set_signals_pb_2D_bis.setIcon(icon)
self.ui.navigator1D.ui.button_widget.layout().insertWidget(0, self.ui.set_signals_pb_1D)
self.ui.navigator2D.ui.buttons_layout.insertWidget(0, self.ui.set_signals_pb_2D)
self.ui.viewer1D.ui.button_widget.layout().insertWidget(0, self.ui.set_signals_pb_1D_bis)
self.ui.viewer2D.ui.buttons_layout.insertWidget(0, self.ui.set_signals_pb_2D_bis)
#main_layout.addWidget(vsplitter)
self.ui.set_signals_pb_1D.clicked.connect(self.signal_axes_selection)
self.ui.set_signals_pb_2D.clicked.connect(self.signal_axes_selection)
self.ui.set_signals_pb_1D_bis.clicked.connect(self.signal_axes_selection)
self.ui.set_signals_pb_2D_bis.clicked.connect(self.signal_axes_selection)
#to start: display as default a 2D navigator and a 1D viewer
self.ui.navigator1D.parent.setVisible(False)
self.ui.viewer2D.parent.setVisible(True)
def set_GUI(self):
"""
Create the graphic interface of the h5 file analyser, including:
* *h5 file dock* : QtreeWidget (custom instance of Tree_layout) showing the contents of the h5 file
* *status bar* : the top_down information bar
* *tree_dock* : The QTree viewer
* *1D viewer dock* : the preview window of 1D data
* *2D viewer dock* : the preview window of 2D data
* *Navigator viewer dock* : the global navigator graphic interface
"""
# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# h5 file dock
V_splitter = QtWidgets.QSplitter(Qt.Vertical)
H_splitter = QtWidgets.QSplitter(Qt.Horizontal)
Form = QtWidgets.QWidget()
self.ui.h5file_tree = Tree_layout(Form,
col_counts=2,
labels=["Node", 'Pixmap'])
self.ui.h5file_tree.ui.Tree.setMinimumWidth(250)
self.ui.h5file_tree.ui.Tree.itemClicked.connect(
self.show_h5_attributes)
self.ui.h5file_tree.ui.Tree.itemDoubleClicked.connect(
self.show_h5_data)
V_splitter.addWidget(Form)
self.ui.attributes_table = pymodaq_ptypes.Table_custom()
V_splitter.addWidget(self.ui.attributes_table)
H_splitter.addWidget(V_splitter)
self.ui.settings_tree = ParameterTree()
self.ui.settings_tree.setMinimumWidth(300)
H_splitter.addWidget(self.ui.settings_tree)
self.ui.menubar = self.mainwindow.menuBar()
self.create_menu(self.ui.menubar)
# %%create status bar
self.ui.statusbar = QtWidgets.QStatusBar()
self.ui.statusbar.setMaximumHeight(25)
# %% create tree dock
file_dock = Dock("File data", size=(1, 1), autoOrientation=False)
# give this dock the minimum possible size
file_dock.setOrientation('vertical')
file_dock.addWidget(H_splitter)
file_dock.addWidget(self.ui.statusbar)
self.settings = Parameter.create(name='Param', type='group')
self.ui.settings_tree.setParameters(self.settings, showTop=False)
# #%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# #% 1D viewer Dock
viewer1D_widget = QtWidgets.QWidget()
self.ui.viewer1D = Viewer1D(viewer1D_widget)
dock1D = Dock('Viewer1D')
dock1D.addWidget(viewer1D_widget)
# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# % 2D viewer Dock
viewer2D_widget = QtWidgets.QWidget()
self.ui.viewer2D = Viewer2D(viewer2D_widget)
dock2D = Dock('Viewer2D')
dock2D.addWidget(viewer2D_widget)
# #%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# #% Navigator viewer Dock
navigator1D_widget = QtWidgets.QWidget()
self.ui.navigator1D = Viewer1D(navigator1D_widget)
self.ui.navigator1D.ui.crosshair.crosshair_dragged.connect(
self.update_viewer_data)
self.ui.navigator1D.ui.crosshair_pb.click()
navigator2D_widget = QtWidgets.QWidget()
self.ui.navigator2D = Viewer2D(navigator2D_widget)
self.ui.navigator2D.crosshair_dragged.connect(
self.update_viewer_data
) # export scaled position in conjonction with 2D scaled axes
self.ui.navigator2D.ui.crosshair_pb.click()
dock_nav = Dock('Navigator')
dock_nav.addWidget(navigator1D_widget)
dock_nav.addWidget(navigator2D_widget, 1, 0)
self.dockarea.addDock(file_dock, 'top')
self.dockarea.addDock(dock2D, 'right', file_dock)
self.dockarea.addDock(dock1D, 'bottom', dock2D)
self.dockarea.addDock(dock_nav, 'right', dock2D)
def set_GUI(self):
###########################################
###########################################
#init the docks containing the main widgets
#######################################################################################################################
#create a dock containing a viewer object, displaying the data for the spectrometer
self.dock_viewer = Dock('Viewer dock', size=(350, 350))
self.dockarea.addDock(self.dock_viewer, 'left')
target_widget = QtWidgets.QWidget()
self.viewer = Viewer1D(target_widget)
self.dock_viewer.addWidget(target_widget)
################################################################
#create a logger dock where to store info senf from the programm
self.dock_logger = Dock("Logger")
self.logger_list = QtWidgets.QListWidget()
self.logger_list.setMinimumWidth(300)
self.dock_logger.addWidget(self.logger_list)
self.dockarea.addDock(self.dock_logger, 'right')
self.log_signal[str].connect(self.add_log)
############################################
# creating a menubar
self.menubar = self.mainwindow.menuBar()
self.create_menu(self.menubar)
#creating a toolbar
self.toolbar = QtWidgets.QToolBar()
self.create_toolbar()
self.mainwindow.addToolBar(self.toolbar)
#creating a status bar
self.statusbar = QtWidgets.QStatusBar()
self.statusbar.setMaximumHeight(25)
self.status_laser = QtWidgets.QLabel('????')
self.status_laser.setAlignment(Qt.AlignCenter)
#self.status_laser.setButtonSymbols(QtWidgets.QAbstractSpinBox.NoButtons)
#self.status_laser.setReadOnly(True)
self.status_laser.setMaximumWidth(80)
self.status_laser.setMinimumWidth(80)
self.status_laser.setToolTip('Current laser wavelength')
self.status_laser.setStyleSheet("background-color: red")
self.status_center = QtWidgets.QLabel('????')
self.status_center.setAlignment(Qt.AlignCenter)
#self.status_center.setReadOnly(True)
#self.status_center.setButtonSymbols(QtWidgets.QAbstractSpinBox.NoButtons)
self.status_center.setMaximumWidth(80)
self.status_center.setMinimumWidth(80)
self.status_center.setToolTip(
'center frequency of the spectrum, either in nm or cm-1')
self.status_center.setStyleSheet("background-color: red")
self.status_init = QLED()
self.status_init.setToolTip('Initialization state of the detector')
self.status_init.set_as_false()
self.status_init.clickable = False
self.statusbar.addPermanentWidget(self.status_laser)
self.statusbar.addPermanentWidget(self.status_center)
self.statusbar.addPermanentWidget(self.status_init)
self.dockarea.window().setStatusBar(self.statusbar)
#############################################
self.settings = Parameter.create(name='settings',
type='group',
children=self.params)
self.settings.sigTreeStateChanged.connect(self.parameter_tree_changed)
dock_config_settings = Dock('Configuration', size=(300, 350))
self.dockarea.addDock(dock_config_settings, 'above', self.dock_logger)
# create main parameter tree
self.config_settings_tree = ParameterTree()
dock_config_settings.addWidget(self.config_settings_tree, 10)
self.config_settings_tree.setMinimumWidth(300)
self.config_settings_tree.setParameters(self.settings.child(
('config_settings')),
showTop=False)
#any change to the tree on the user interface will call the parameter_tree_changed method where all actions will be applied
dock_calib_settings = Dock('Calibration', size=(300, 350))
self.dockarea.addDock(dock_calib_settings, 'above', self.dock_logger)
# create main parameter tree
self.calib_settings_tree = ParameterTree()
dock_calib_settings.addWidget(self.calib_settings_tree, 10)
self.calib_settings_tree.setMinimumWidth(300)
self.calib_settings_tree.setParameters(self.settings.child(
('calib_settings')),
showTop=False)
#any change to the tree on the user interface will call the parameter_tree_changed method where all actions will be applied
#this one for the custom application settings
dock_acq_settings = Dock('Acquisition', size=(300, 350))
self.dockarea.addDock(dock_acq_settings, 'above', dock_config_settings)
# create main parameter tree
self.acq_settings_tree = ParameterTree()
dock_acq_settings.addWidget(self.acq_settings_tree, 10)
self.acq_settings_tree.setMinimumWidth(300)
self.acq_settings_tree.setParameters(self.settings.child(
('acq_settings')),
showTop=False)
