def registerCustomExecutables(self, workflow=None):
"""
"""
AbstractVervetWorkflow.registerCustomExecutables(self, workflow=workflow)
AbstractAlignmentWorkflow.registerCustomExecutables(self, workflow=workflow)
if workflow is None:
workflow = self
namespace = workflow.namespace
version = workflow.version
operatingSystem = workflow.operatingSystem
architecture = workflow.architecture
clusters_size = workflow.clusters_size
site_handler = workflow.site_handler
vervetSrcPath = self.vervetSrcPath
# 2012.8.7 each cell is a tuple of (executable, clusterSizeMultipler (0 if u do not need clustering)
executableClusterSizeMultiplierList = []
self.addExecutableAndAssignProperClusterSize(
executableClusterSizeMultiplierList, defaultClustersSize=self.clusters_size
)
def __init__(self, **keywords):
"""
2011-7-11
"""
AbstractAlignmentWorkflow.__init__(self, **keywords)
self.db = self.db_vervet # 2013.1.25 main db