def test_exists(self):
f = open(self.unique, 'w')
f.close()
p = functions.get_new_path(self.unique)
new_p = self.unique + '-0'
self.assertEqual(p, new_p)
self.assertTrue(os.path.exists(p))
def write_result_summaries(self,
prior_indices=None,
sep='\t',
include_tau_exclusion_info=False):
if not prior_indices:
prior_indices = self.prior_index_to_config.keys()
if self.combined_prior_index:
prior_indices.append(self.combined_prior_index)
for prior_idx in prior_indices:
for observed_idx in self.observed_index_to_path.iterkeys():
out_path = self.get_result_summary_path(
observed_idx, prior_idx)
out_path = functions.get_new_path(out_path)
out, close = process_file_arg(out_path,
'w',
compresslevel=self.compresslevel)
keys = []
for i, r in enumerate(
self.flat_result_iter(observed_idx, prior_idx,
include_tau_exclusion_info)):
if i == 0:
keys = r.keys()
out.write('{0}\n'.format(sep.join(keys)))
out.write('{0}\n'.format(
sep.join([str(r[k]) for k in keys])))
out.close()
def test_exists(self):
f = open(self.unique, 'w')
f.close()
p = functions.get_new_path(self.unique)
new_p = self.unique + '-0'
self.assertEqual(p, new_p)
self.assertTrue(os.path.exists(p))
def write_result_summaries(self, prior_indices = None, sep = '\t',
include_tau_exclusion_info = False):
if not prior_indices:
prior_indices = self.prior_index_to_config.keys()
if self.combined_prior_index:
prior_indices.append(self.combined_prior_index)
for prior_idx in prior_indices:
for observed_idx in self.observed_index_to_path.iterkeys():
out_path = self.get_result_summary_path(observed_idx, prior_idx)
out_path = functions.get_new_path(out_path)
out, close = process_file_arg(out_path, 'w',
compresslevel = self.compresslevel)
keys = []
for i, r in enumerate(self.flat_result_iter(observed_idx,
prior_idx, include_tau_exclusion_info)):
if i == 0:
keys = r.keys()
out.write('{0}\n'.format(sep.join(keys)))
out.write('{0}\n'.format(sep.join([str(r[k
]) for k in keys])))
out.close()
def test_unique(self):
p = functions.get_new_path(self.unique)
self.assertEqual(p, self.unique)
self.assertTrue(os.path.exists(p))
def test_unique(self):
p = functions.get_new_path(self.unique)
self.assertEqual(p, self.unique)
self.assertTrue(os.path.exists(p))