def setUp(self): self.set_up() self.cfg_path = package_paths.data_path('4pairs_1locus.cfg') self.cfg_path2 = package_paths.data_path('4pairs_1locus_maxt5.cfg') self.np_new_cfg = package_paths.data_path('negros_panay_new.cfg') self.np_new_sps_cfg = package_paths.data_path('negros_panay_new_subs_per_site.cfg') self.np_cfg = package_paths.data_path('negros_panay_timescale.cfg') self.np_sps_cfg = package_paths.data_path('negros_panay_timescale_subs_per_site.cfg') self.seed = GLOBAL_RNG.randint(1, 999999999) self.rng = random.Random() self.rng.seed(self.seed) self.output_dir = self.get_test_subdir(prefix='dmc-test-') self.output_prefix = self.temp_fs.token_id
def setUp(self): self.set_up() self.cfg_path = package_paths.data_path('4pairs_1locus.cfg') self.cfg_path2 = package_paths.data_path('4pairs_1locus_maxt5.cfg') self.np_new_cfg = package_paths.data_path('negros_panay_new.cfg') self.np_new_sps_cfg = package_paths.data_path( 'negros_panay_new_subs_per_site.cfg') self.np_cfg = package_paths.data_path('negros_panay_timescale.cfg') self.np_sps_cfg = package_paths.data_path( 'negros_panay_timescale_subs_per_site.cfg') self.seed = GLOBAL_RNG.randint(1, 999999999) self.rng = random.Random() self.rng.seed(self.seed) self.output_dir = self.get_test_subdir(prefix='dmc-test-') self.output_prefix = self.temp_fs.token_id