def setUp(self):
self.set_up()
self.cfg_path = package_paths.data_path('4pairs_1locus.cfg')
self.cfg_path2 = package_paths.data_path('4pairs_1locus_maxt5.cfg')
self.np_new_cfg = package_paths.data_path('negros_panay_new.cfg')
self.np_new_sps_cfg = package_paths.data_path('negros_panay_new_subs_per_site.cfg')
self.np_cfg = package_paths.data_path('negros_panay_timescale.cfg')
self.np_sps_cfg = package_paths.data_path('negros_panay_timescale_subs_per_site.cfg')
self.seed = GLOBAL_RNG.randint(1, 999999999)
self.rng = random.Random()
self.rng.seed(self.seed)
self.output_dir = self.get_test_subdir(prefix='dmc-test-')
self.output_prefix = self.temp_fs.token_id
def setUp(self):
self.set_up()
self.cfg_path = package_paths.data_path('4pairs_1locus.cfg')
self.cfg_path2 = package_paths.data_path('4pairs_1locus_maxt5.cfg')
self.np_new_cfg = package_paths.data_path('negros_panay_new.cfg')
self.np_new_sps_cfg = package_paths.data_path(
'negros_panay_new_subs_per_site.cfg')
self.np_cfg = package_paths.data_path('negros_panay_timescale.cfg')
self.np_sps_cfg = package_paths.data_path(
'negros_panay_timescale_subs_per_site.cfg')
self.seed = GLOBAL_RNG.randint(1, 999999999)
self.rng = random.Random()
self.rng.seed(self.seed)
self.output_dir = self.get_test_subdir(prefix='dmc-test-')
self.output_prefix = self.temp_fs.token_id
