def test_link_resolve(self):
nwbfile = NWBFile("a file with header data", "NB123A", datetime(2018, 6, 1, tzinfo=tzlocal()))
device = nwbfile.create_device('device_name')
electrode_group = nwbfile.create_electrode_group(
name='electrode_group_name',
description='desc',
device=device,
location='unknown')
nwbfile.add_electrode(id=0,
x=1.0, y=2.0, z=3.0, # position?
imp=2.718,
location='unknown',
filtering='unknown',
group=electrode_group)
etr = nwbfile.create_electrode_table_region([0], 'etr_name')
for passband in ('theta', 'gamma'):
electrical_series = ElectricalSeries(name=passband + '_phase',
data=[1., 2., 3.],
rate=0.0,
electrodes=etr)
nwbfile.add_acquisition(electrical_series)
with NWBHDF5IO(self.path, 'w') as io:
io.write(nwbfile)
with NWBHDF5IO(self.path, 'r') as io:
io.read()
def test_link_resolve(self):
print("TEST_LINK_RESOLVE")
nwbfile = NWBFile("source", "a file with header data", "NB123A",
'2018-06-01T00:00:00')
device = nwbfile.create_device('device_name', 'source')
electrode_group = nwbfile.create_electrode_group(
name='electrode_group_name',
source='source',
description='desc',
device=device,
location='unknown')
nwbfile.add_electrode(
0,
1.0,
2.0,
3.0, # position?
imp=2.718,
location='unknown',
filtering='unknown',
description='desc',
group=electrode_group)
etr = nwbfile.create_electrode_table_region([0], 'etr_name')
for passband in ('theta', 'gamma'):
electrical_series = ElectricalSeries(name=passband + '_phase',
source='ephys_analysis',
data=[1., 2., 3.],
rate=0.0,
electrodes=etr)
nwbfile.add_acquisition(electrical_series)
with NWBHDF5IO(self.path, 'w') as io:
io.write(nwbfile)
with NWBHDF5IO(self.path, 'r') as io:
io.read()