예제 #1
0
    def __init__(self, image=None, fillHistogram=True):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = lambda: None  # fake a dead weakref

        self.layout = QtWidgets.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)
        self.vb = ViewBox(parent=self)
        self.vb.setMaximumWidth(152)
        self.vb.setMinimumWidth(45)
        self.vb.setMouseEnabled(x=False, y=True)
        self.gradient = GradientEditorItem()
        self.gradient.setOrientation('right')
        self.gradient.loadPreset('grey')
        self.region = LinearRegionItem([0, 1], LinearRegionItem.Horizontal)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.axis = AxisItem('left',
                             linkView=self.vb,
                             maxTickLength=-10,
                             parent=self)
        self.layout.addItem(self.axis, 0, 0)
        self.layout.addItem(self.vb, 0, 1)
        self.layout.addItem(self.gradient, 0, 2)
        self.range = None
        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)

        #self.grid = GridItem()
        #self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)
        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.plot.rotate(90)
        self.fillHistogram(fillHistogram)

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
예제 #2
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    def __init__(self, image=None, fillHistogram=True):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = lambda: None  # fake a dead weakref

        self.layout = QtWidgets.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1,1,1,1)
        self.layout.setSpacing(0)
        self.vb = ViewBox(parent=self)
        self.vb.setMaximumWidth(152)
        self.vb.setMinimumWidth(45)
        self.vb.setMouseEnabled(x=False, y=True)
        self.gradient = GradientEditorItem()
        self.gradient.setOrientation('right')
        self.gradient.loadPreset('grey')
        self.region = LinearRegionItem([0, 1], LinearRegionItem.Horizontal)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.axis = AxisItem('left', linkView=self.vb, maxTickLength=-10, parent=self)
        self.layout.addItem(self.axis, 0, 0)
        self.layout.addItem(self.vb, 0, 1)
        self.layout.addItem(self.gradient, 0, 2)
        self.range = None
        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)

        #self.grid = GridItem()
        #self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)
        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.plot.rotate(90)
        self.fillHistogram(fillHistogram)

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
예제 #3
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    def __init__(self, image=None, fillHistogram=True):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = None
        self.first_image = True
        self.percentageLevel = False

        self.layout = QtGui.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)
        self.vb = ViewBox()
        self.vb.setMaximumHeight(30)
        self.vb.setMinimumHeight(45)
        self.vb.setMouseEnabled(x=True, y=False)
        self.gradient = GradientEditorItem()
        self.gradient.setOrientation("top")
        self.gradient.loadPreset("grey")
        self.region = LinearRegionItem([0, 1], LinearRegionItem.Vertical)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.layout.addItem(self.vb, 1, 0)
        self.layout.addItem(self.gradient, 0, 0)
        self.range = None
        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)

        # self.grid = GridItem()
        # self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)
        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.fillHistogram(fillHistogram)

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
예제 #4
0
class HistogramLUTItem(GraphicsWidget):
    """
    This is a graphicsWidget which provides controls for adjusting the display of an image.
    Includes:

    - Image histogram
    - Movable region over histogram to select black/white levels
    - Gradient editor to define color lookup table for single-channel images
    """

    sigLookupTableChanged = QtCore.Signal(object)
    sigLevelsChanged = QtCore.Signal(object)
    sigLevelChangeFinished = QtCore.Signal(object)

    def __init__(self, image=None, fillHistogram=True):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = lambda: None  # fake a dead weakref

        self.layout = QtWidgets.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1,1,1,1)
        self.layout.setSpacing(0)
        self.vb = ViewBox(parent=self)
        self.vb.setMaximumWidth(152)
        self.vb.setMinimumWidth(45)
        self.vb.setMouseEnabled(x=False, y=True)
        self.gradient = GradientEditorItem()
        self.gradient.setOrientation('right')
        self.gradient.loadPreset('grey')
        self.region = LinearRegionItem([0, 1], LinearRegionItem.Horizontal)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.axis = AxisItem('left', linkView=self.vb, maxTickLength=-10, parent=self)
        self.layout.addItem(self.axis, 0, 0)
        self.layout.addItem(self.vb, 0, 1)
        self.layout.addItem(self.gradient, 0, 2)
        self.range = None
        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)

        #self.grid = GridItem()
        #self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)
        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.plot.rotate(90)
        self.fillHistogram(fillHistogram)

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
        #self.setSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Expanding)

    def fillHistogram(self, fill=True, level=0.0, color=(100, 100, 200)):
        if fill:
            self.plot.setFillLevel(level)
            self.plot.setFillBrush(color)
        else:
            self.plot.setFillLevel(None)

    #def sizeHint(self, *args):
        #return QtCore.QSizeF(115, 200)

    def paint(self, p, *args):
        pen = self.region.lines[0].pen
        rgn = self.getLevels()
        p1 = self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[0]))
        p2 = self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[1]))
        gradRect = self.gradient.mapRectToParent(self.gradient.gradRect.rect())
        for pen in [fn.mkPen('k', width=3), pen]:
            p.setPen(pen)
            p.drawLine(p1, gradRect.bottomLeft())
            p.drawLine(p2, gradRect.topLeft())
            p.drawLine(gradRect.topLeft(), gradRect.topRight())
            p.drawLine(gradRect.bottomLeft(), gradRect.bottomRight())
        #p.drawRect(self.boundingRect())


    def setHistogramRange(self, mn, mx, padding=0.1):
        """Set the Y range on the histogram plot. This disables auto-scaling."""
        self.vb.enableAutoRange(self.vb.YAxis, False)
        self.vb.setYRange(mn, mx, padding)

        #d = mx-mn
        #mn -= d*padding
        #mx += d*padding
        #self.range = [mn,mx]
        #self.updateRange()
        #self.vb.setMouseEnabled(False, True)
        #self.region.setBounds([mn,mx])

    def autoHistogramRange(self):
        """Enable auto-scaling on the histogram plot."""
        self.vb.enableAutoRange(self.vb.XYAxes)
        #self.range = None
        #self.updateRange()
        #self.vb.setMouseEnabled(False, False)

    #def updateRange(self):
        #self.vb.autoRange()
        #if self.range is not None:
            #self.vb.setYRange(*self.range)
        #vr = self.vb.viewRect()

        #self.region.setBounds([vr.top(), vr.bottom()])

    def setImageItem(self, img):
        """Set an ImageItem to have its levels and LUT automatically controlled
        by this HistogramLUTItem.
        """
        self.imageItem = weakref.ref(img)
        img.sigImageChanged.connect(self.imageChanged)
        img.setLookupTable(self.getLookupTable)  ## send function pointer, not the result
        #self.gradientChanged()
        self.regionChanged()
        self.imageChanged(autoLevel=True)
        #self.vb.autoRange()

    def viewRangeChanged(self):
        self.update()

    def gradientChanged(self):
        if self.imageItem() is not None:
            if self.gradient.isLookupTrivial():
                self.imageItem().setLookupTable(None) #lambda x: x.astype(np.uint8))
            else:
                self.imageItem().setLookupTable(self.getLookupTable)  ## send function pointer, not the result

        self.lut = None
        #if self.imageItem is not None:
            #self.imageItem.setLookupTable(self.gradient.getLookupTable(512))
        self.sigLookupTableChanged.emit(self)

    def getLookupTable(self, img=None, n=None, alpha=None):
        """Return a lookup table from the color gradient defined by this
        HistogramLUTItem.
        """
        if n is None:
            if img.dtype == np.uint8:
                n = 256
            else:
                n = 512
        if self.lut is None:
            self.lut = self.gradient.getLookupTable(n, alpha=alpha)
        return self.lut

    def regionChanged(self):
        #if self.imageItem is not None:
            #self.imageItem.setLevels(self.region.getRegion())
        self.sigLevelChangeFinished.emit(self)
        #self.update()

    def regionChanging(self):
        if self.imageItem() is not None:
            self.imageItem().setLevels(self.region.getRegion())
        self.sigLevelsChanged.emit(self)
        self.update()

    def imageChanged(self, autoLevel=False, autoRange=False):
        profiler = debug.Profiler()
        img = self.imageItem().image
        if img is None:
            histRange = None
        else:
            histRange = (np.nanmin(img), np.nanmax(img))

        h = self.imageItem().getHistogram(range=histRange)
        profiler('get histogram')
        if h[0] is None:
            return
        self.plot.setData(*h)
        profiler('set plot')
        if autoLevel:
            mn = h[0][0]
            mx = h[0][-1]
            self.region.setRegion([mn, mx])
            profiler('set region')

    def getLevels(self):
        """Return the min and max levels.
        """
        return self.region.getRegion()

    def setLevels(self, mn, mx):
        """Set the min and max levels.
        """
        self.region.setRegion([mn, mx])
예제 #5
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    def __init__(self, image=None, fillHistogram=False, orientation='horizontal', autoLevel=None):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = None
        self.first_image = True
        self.percentageLevel = False
        self.orientation = orientation
        self.autoLevel = autoLevel

        self.layout = QtWidgets.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)

        self.vb = ViewBox()

        self.gradient = GradientEditorItem()
        self.gradient.loadPreset('grey')

        if orientation == 'horizontal':
            self.vb.setMouseEnabled(x=True, y=False)
            self.vb.setMaximumHeight(30)
            self.vb.setMinimumHeight(45)
            self.gradient.setOrientation('top')
            self.region = LogarithmRegionItem([0, 1], LinearRegionItem.Vertical)
            self.layout.addItem(self.vb, 1, 0)
            self.layout.addItem(self.gradient, 0, 0)
            self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
            self.vb.setFlag(self.gradient.ItemStacksBehindParent)
        elif orientation == 'vertical':
            self.vb.setMouseEnabled(x=False, y=True)
            self.vb.setMaximumWidth(30)
            self.vb.setMinimumWidth(45)
            self.gradient.setOrientation('right')
            self.region = LogarithmRegionItem([0, 1], LinearRegionItem.Horizontal)
            self.layout.addItem(self.vb, 0, 0)
            self.layout.addItem(self.gradient, 0, 1)

        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.vb.setMenuEnabled(False)

        # self.grid = GridItem()
        # self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)

        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.vb.autoRange()
        self.fillHistogram(fillHistogram)
        self.plot.setPen(pg.mkPen(color=(50, 150, 50), size=3))

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
            # self.setSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Expanding)

        self.vb.mouseClickEvent = self.empty_function
        self.vb.mouseDragEvent = self.empty_function
        self.vb.mouseDoubleClickEvent = self.empty_function
        self.vb.wheelEvent = self.empty_function
예제 #6
0
class HistogramLUTItem(GraphicsWidget):
    """
    This is a graphicsWidget which provides controls for adjusting the display of an image.
    Includes:

    - Image histogram 
    - Movable region over histogram to select black/white levels
    - Gradient editor to define color lookup table for single-channel images
    """

    sigLookupTableChanged = QtCore.Signal(object)
    sigLevelsChanged = QtCore.Signal(object)
    sigLevelChangeFinished = QtCore.Signal(object)

    def __init__(self, image=None, fillHistogram=False, orientation='horizontal', autoLevel=None):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = None
        self.first_image = True
        self.percentageLevel = False
        self.orientation = orientation
        self.autoLevel = autoLevel

        self.layout = QtWidgets.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)

        self.vb = ViewBox()

        self.gradient = GradientEditorItem()
        self.gradient.loadPreset('grey')

        if orientation == 'horizontal':
            self.vb.setMouseEnabled(x=True, y=False)
            self.vb.setMaximumHeight(30)
            self.vb.setMinimumHeight(45)
            self.gradient.setOrientation('top')
            self.region = LogarithmRegionItem([0, 1], LinearRegionItem.Vertical)
            self.layout.addItem(self.vb, 1, 0)
            self.layout.addItem(self.gradient, 0, 0)
            self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
            self.vb.setFlag(self.gradient.ItemStacksBehindParent)
        elif orientation == 'vertical':
            self.vb.setMouseEnabled(x=False, y=True)
            self.vb.setMaximumWidth(30)
            self.vb.setMinimumWidth(45)
            self.gradient.setOrientation('right')
            self.region = LogarithmRegionItem([0, 1], LinearRegionItem.Horizontal)
            self.layout.addItem(self.vb, 0, 0)
            self.layout.addItem(self.gradient, 0, 1)

        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.vb.setMenuEnabled(False)

        # self.grid = GridItem()
        # self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)

        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.vb.autoRange()
        self.fillHistogram(fillHistogram)
        self.plot.setPen(pg.mkPen(color=(50, 150, 50), size=3))

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
            # self.setSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Expanding)

        self.vb.mouseClickEvent = self.empty_function
        self.vb.mouseDragEvent = self.empty_function
        self.vb.mouseDoubleClickEvent = self.empty_function
        self.vb.wheelEvent = self.empty_function

    def fillHistogram(self, fill=True, level=0.0, color=(100, 100, 200)):
        if fill:
            self.plot.setFillLevel(level)
            self.plot.setFillBrush(color)
        else:
            self.plot.setFillLevel(None)

            # def sizeHint(self, *args):
            # return QtCore.QSizeF(115, 200)

    def paint(self, p, *args):
        pen = self.region.lines[0].pen
        rgn = self.getLevels()
        if self.orientation == 'horizontal':
            p1 = self.vb.mapFromViewToItem(self, Point(rgn[0], self.vb.viewRect().center().y()))
            p2 = self.vb.mapFromViewToItem(self, Point(rgn[1], self.vb.viewRect().center().y()))
            gradRect = self.gradient.mapRectToParent(self.gradient.gradRect.rect())
            for pen in [fn.mkPen('k', width=3), pen]:
                p.setPen(pen)
                p.drawLine(p1, gradRect.bottomLeft())
                p.drawLine(p2, gradRect.bottomRight())
                p.drawLine(gradRect.bottomLeft(), gradRect.topLeft())
                p.drawLine(gradRect.bottomRight(), gradRect.topRight())

        elif self.orientation == 'vertical':
            p1 = self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[0]))
            p2 = self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[1]))
            gradRect = self.gradient.mapRectToParent(self.gradient.gradRect.rect())
            for pen in [fn.mkPen('k', width=3), pen]:
                p.setPen(pen)
                p.drawLine(p1, gradRect.bottomLeft())
                p.drawLine(p2, gradRect.topLeft())
                p.drawLine(gradRect.topLeft(), gradRect.topRight())
                p.drawLine(gradRect.bottomLeft(), gradRect.bottomRight())

    def setHistogramRange(self, mn, mx, padding=0.1):
        """Set the Y range on the histogram plot. This disables auto-scaling."""
        self.vb.enableAutoRange(self.vb.YAxis, False)
        if self.orientation == 'horizontal':
            self.vb.setXRange(mn, mx, padding)
        elif self.orientation == 'vertical':
            self.vb.setYrange(mn, mx, padding)
            # mn -= d*padding
            # mx += d*padding
            # self.range = [mn,mx]
            # self.updateRange()
            # self.vb.setMouseEnabled(False, True)
            # self.region.setBounds([mn,mx])

    def autoHistogramRange(self):
        """Enable auto-scaling on the histogram plot."""
        self.vb.enableAutoRange(self.vb.XAxis, True)
        self.vb.enableAutoRange(self.vb.YAxis, True)
        # self.range = None
        # self.updateRange()
        # self.vb.setMouseEnabled(False, False)

        # def updateRange(self):
        # self.vb.autoRange()
        # if self.range is not None:
        # self.vb.setYRange(*self.range)
        # vr = self.vb.viewRect()

        # self.region.setBounds([vr.top(), vr.bottom()])

    def setImageItem(self, img):
        self.imageItem = img
        img.sigImageChanged.connect(self.imageChanged)
        img.setLookupTable(self.getLookupTable)  ## send function pointer, not the result
        # self.gradientChanged()
        self.regionChanged()
        self.imageChanged()
        # self.vb.autoRange()

    def gradientChanged(self):
        if self.imageItem is not None:
            if self.gradient.isLookupTrivial():
                self.imageItem.setLookupTable(None)  # lambda x: x.astype(np.uint8))
            else:
                self.imageItem.setLookupTable(self.getLookupTable)  ## send function pointer, not the result

        self.lut = None
        # if self.imageItem is not None:
        # self.imageItem.setLookupTable(self.gradient.getLookupTable(512))
        self.sigLookupTableChanged.emit(self)

    def getLookupTable(self, img=None, n=None, alpha=None):
        if n is None:
            if img.dtype == np.uint8:
                n = 256
            else:
                n = 512
        if self.lut is None:
            self.lut = self.gradient.getLookupTable(n, alpha=alpha)
        return self.lut

    def regionChanged(self):
        self.sigLevelChangeFinished.emit(self)

    def regionChanging(self):
        if self.imageItem is not None:
            self.imageItem.setLevels(np.exp(self.region.getRegion()))
        self.sigLevelsChanged.emit(self)
        self.update()

    def imageChanged(self, autoRange=False):
        hist_x, hist_y = list(self.imageItem.getHistogram(bins=3000))

        if hist_x is None:
            return

        hist_x, hist_y = np.array(hist_x), np.array(hist_y)

        hist_x = hist_x[np.where(hist_y>0)]
        hist_y = hist_y[np.where(hist_y>0)]

        self.hist_x = hist_x
        self.hist_y = hist_y

        hist_y_log = np.log(hist_y[1:])
        hist_x_log = np.log(hist_x[1:])

        if self.orientation == 'horizontal':
            self.plot.setData(hist_x_log, hist_y_log)
        elif self.orientation == 'vertical':
            self.plot.setData(hist_y_log, hist_x_log)

    def getLevels(self):
        return self.region.getRegion()

    def getExpLevels(self):
        rgn = self.getLevels()
        return np.exp(rgn[0]), np.exp(rgn[1])

    def setLevels(self, mn, mx):
        self.region.setRegion([mn, mx])
        if self.imageItem is not None:
            self.imageItem.setLevels(np.exp(self.region.getRegion()))

    def empty_function(self, *args):
        pass
예제 #7
0
    def __init__(self, image=None, fillHistogram=False, orientation='horizontal'):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = None
        self.first_image = True
        self.percentageLevel = False
        self.orientation = orientation
        self.range = None

        self.layout = QtGui.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)

        self.vb = ViewBox()

        self.gradient = GradientEditorItem()
        self.gradient.loadPreset('grey')

        if orientation == 'horizontal':
            self.vb.setMouseEnabled(x=True, y=False)
            self.vb.setMaximumHeight(30)
            self.vb.setMinimumHeight(45)
            self.gradient.setOrientation('top')
            self.region = LogarithmRegionItem([0, 1], LinearRegionItem.Vertical)
            self.layout.addItem(self.vb, 1, 0)
            self.layout.addItem(self.gradient, 0, 0)
            self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
            self.vb.setFlag(self.gradient.ItemStacksBehindParent)
        elif orientation == 'vertical':
            self.vb.setMouseEnabled(x=False, y=True)
            self.vb.setMaximumWidth(30)
            self.vb.setMinimumWidth(45)
            self.gradient.setOrientation('right')
            self.region = LogarithmRegionItem([0, 1], LinearRegionItem.Horizontal)
            self.layout.addItem(self.vb, 0, 0)
            self.layout.addItem(self.gradient, 0, 1)

        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.vb.setMenuEnabled(False)


        #self.grid = GridItem()
        #self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)

        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        if self.orientation == 'horizontal':
            self.plot.setLogMode(yMode=True, xMode=False)
        elif self.orientation == 'vertical':
            self.plot.setLogMode(yMode=False, xMode=True)
            self.vb.invertX(True)
        self.vb.autoRange()
        self.fillHistogram(fillHistogram)
        self.plot.setPen(pg.mkPen(color=(50, 150, 50), size=3))

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
            #self.setSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Expanding)

        self.vb.mouseClickEvent = self.empty_function
        self.vb.mouseDragEvent = self.empty_function
        self.vb.mouseDoubleClickEvent = self.empty_function
        self.vb.wheelEvent = self.empty_function
예제 #8
0
class HorHistogramLUTItem(GraphicsWidget):
    """
    This is a graphicsWidget which provides controls for adjusting the display of an image.
    Includes:

    - Image histogram 
    - Movable region over histogram to select black/white levels
    - Gradient editor to define color lookup table for single-channel images
    """

    sigLookupTableChanged = QtCore.pyqtSignal(object)
    sigLevelsChanged = QtCore.pyqtSignal(object)
    sigLevelChangeFinished = QtCore.pyqtSignal(object)

    def __init__(self, image=None, fillHistogram=False, orientation='horizontal'):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = None
        self.first_image = True
        self.percentageLevel = False
        self.orientation = orientation
        self.range = None

        self.layout = QtGui.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)

        self.vb = ViewBox()

        self.gradient = GradientEditorItem()
        self.gradient.loadPreset('grey')

        if orientation == 'horizontal':
            self.vb.setMouseEnabled(x=True, y=False)
            self.vb.setMaximumHeight(30)
            self.vb.setMinimumHeight(45)
            self.gradient.setOrientation('top')
            self.region = LogarithmRegionItem([0, 1], LinearRegionItem.Vertical)
            self.layout.addItem(self.vb, 1, 0)
            self.layout.addItem(self.gradient, 0, 0)
            self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
            self.vb.setFlag(self.gradient.ItemStacksBehindParent)
        elif orientation == 'vertical':
            self.vb.setMouseEnabled(x=False, y=True)
            self.vb.setMaximumWidth(30)
            self.vb.setMinimumWidth(45)
            self.gradient.setOrientation('right')
            self.region = LogarithmRegionItem([0, 1], LinearRegionItem.Horizontal)
            self.layout.addItem(self.vb, 0, 0)
            self.layout.addItem(self.gradient, 0, 1)

        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.vb.setMenuEnabled(False)


        #self.grid = GridItem()
        #self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)

        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        if self.orientation == 'horizontal':
            self.plot.setLogMode(yMode=True, xMode=False)
        elif self.orientation == 'vertical':
            self.plot.setLogMode(yMode=False, xMode=True)
            self.vb.invertX(True)
        self.vb.autoRange()
        self.fillHistogram(fillHistogram)
        self.plot.setPen(pg.mkPen(color=(50, 150, 50), size=3))

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
            #self.setSizePolicy(QtGui.QSizePolicy.Preferred, QtGui.QSizePolicy.Expanding)

        self.vb.mouseClickEvent = self.empty_function
        self.vb.mouseDragEvent = self.empty_function
        self.vb.mouseDoubleClickEvent = self.empty_function
        self.vb.wheelEvent = self.empty_function

    def fillHistogram(self, fill=True, level=0.0, color=(100, 100, 200)):
        if fill:
            self.plot.setFillLevel(level)
            self.plot.setFillBrush(color)
        else:
            self.plot.setFillLevel(None)

            #def sizeHint(self, *args):
            #return QtCore.QSizeF(115, 200)

    def paint(self, p, *args):
        pen = self.region.lines[0].pen
        rgn = self.getLevels()
        if self.orientation == 'horizontal':
            p1 = self.vb.mapFromViewToItem(self, Point(rgn[0], self.vb.viewRect().center().y()))
            p2 = self.vb.mapFromViewToItem(self, Point(rgn[1], self.vb.viewRect().center().y()))
            gradRect = self.gradient.mapRectToParent(self.gradient.gradRect.rect())
            for pen in [fn.mkPen('k', width=3), pen]:
                p.setPen(pen)
                p.drawLine(p1, gradRect.bottomLeft())
                p.drawLine(p2, gradRect.bottomRight())
                p.drawLine(gradRect.bottomLeft(), gradRect.topLeft())
                p.drawLine(gradRect.bottomRight(), gradRect.topRight())

        elif self.orientation == 'vertical':
            p1 = self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[0]))
            p2 = self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[1]))
            gradRect = self.gradient.mapRectToParent(self.gradient.gradRect.rect())
            for pen in [fn.mkPen('k', width=3), pen]:
                p.setPen(pen)
                p.drawLine(p1, gradRect.bottomLeft())
                p.drawLine(p2, gradRect.topLeft())
                p.drawLine(gradRect.topLeft(), gradRect.topRight())
                p.drawLine(gradRect.bottomLeft(), gradRect.bottomRight())


    def setHistogramRange(self, mn, mx, padding=0.1):
        """Set the Y range on the histogram plot. This disables auto-scaling."""
        self.vb.enableAutoRange(self.vb.YAxis, False)
        if self.orientation == 'horizontal':
            self.vb.setXRange(mn, mx, padding)
        elif self.orientation == 'vertical':
            self.vb.setYrange(mn, mx, padding)
            #mn -= d*padding
            #mx += d*padding
            #self.range = [mn,mx]
            #self.updateRange()
            #self.vb.setMouseEnabled(False, True)
            #self.region.setBounds([mn,mx])

    def autoHistogramRange(self):
        """Enable auto-scaling on the histogram plot."""
        self.vb.enableAutoRange(self.vb.XAxis, True)
        self.vb.enableAutoRange(self.vb.YAxis, True)
        #self.range = None
        #self.updateRange()
        #self.vb.setMouseEnabled(False, False)

        #def updateRange(self):
        #self.vb.autoRange()
        #if self.range is not None:
        #self.vb.setYRange(*self.range)
        #vr = self.vb.viewRect()

        #self.region.setBounds([vr.top(), vr.bottom()])

    def setImageItem(self, img):
        self.imageItem = img
        img.sigImageChanged.connect(self.imageChanged)
        img.setLookupTable(self.getLookupTable)  ## send function pointer, not the result
        #self.gradientChanged()
        self.regionChanged()
        self.imageChanged()
        #self.vb.autoRange()

    def viewRangeChanged(self):
        self.update()

    def gradientChanged(self):
        if self.imageItem is not None:
            if self.gradient.isLookupTrivial():
                self.imageItem.setLookupTable(None)  #lambda x: x.astype(np.uint8))
            else:
                self.imageItem.setLookupTable(self.getLookupTable)  ## send function pointer, not the result

        self.lut = None
        #if self.imageItem is not None:
        #self.imageItem.setLookupTable(self.gradient.getLookupTable(512))
        self.sigLookupTableChanged.emit(self)

    def getLookupTable(self, img=None, n=None, alpha=None):
        if n is None:
            if img.dtype == np.uint8:
                n = 256
            else:
                n = 512
        if self.lut is None:
            self.lut = self.gradient.getLookupTable(n, alpha=alpha)
        return self.lut

    def regionChanged(self):
        #if self.imageItem is not None:
        #self.imageItem.setLevels(self.region.getRegion())
        self.sigLevelChangeFinished.emit(self)
        #self.update()

    def regionChanging(self):
        if self.imageItem is not None:
            self.imageItem.setLevels(np.exp(self.region.getRegion()))
        self.sigLevelsChanged.emit(self)
        self.update()

    def imageChanged(self, autoRange=False):
        prof = debug.Profiler('HistogramLUTItem.imageChanged', disabled=True)
        h = list(self.imageItem.getHistogram(bins=1000))

        prof.mark('get histogram')
        if h[0] is None:
            return

        h[1][1:] = np.log(h[1][1:])
        h[0][1:] = np.log(h[0][1:])

        h[0][0] = 0
        h[1][0] = h[1][1]
        if self.orientation == 'horizontal':
            self.plot.setData(h[0], h[1])
        elif self.orientation == 'vertical':
            self.plot.setData(h[1], h[0])

        self.hist_x_range = np.max(h[0]) - np.min(h[0])
        # if self.percentageLevel:
        # if self.first_image:
        #         self.region.setRegion([h[0, 0], h[0, -1]])
        #         self.old_hist_x_range = self.hist_x_range
        #         self.first_image = False
        #     else:
        #         region_fraction = np.array(self.region.getRegion()) / self.old_hist_x_range
        #         self.region.setRegion(region_fraction * self.hist_x_range)
        #         self.old_hist_x_range = self.hist_x_range
        #
        #         #self.vb.setRange(yRange=[0, 1.2 * np.max(h[1])])

    def getLevels(self):
        return self.region.getRegion()

    def setLevels(self, mn, mx):
        self.region.setRegion([mn, mx])

    def empty_function(self, *args):
        pass
예제 #9
0
class HistogramLUTItem(GraphicsWidget):
    """
    This is a graphicsWidget which provides controls for adjusting the display of an image.
    Includes:

    - Image histogram
    - Movable region over histogram to select black/white levels
    - Gradient editor to define color lookup table for single-channel images
    """

    sigLookupTableChanged = QtCore.Signal(object)
    sigLevelsChanged = QtCore.Signal(object)
    sigLevelChangeFinished = QtCore.Signal(object)

    def __init__(self, image=None, fillHistogram=True):
        """
        If *image* (ImageItem) is provided, then the control will be automatically linked to the image and changes to the control will be immediately reflected in the image's appearance.
        By default, the histogram is rendered with a fill. For performance, set *fillHistogram* = False.
        """
        GraphicsWidget.__init__(self)
        self.lut = None
        self.imageItem = lambda: None  # fake a dead weakref

        self.layout = QtWidgets.QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)
        self.vb = ViewBox(parent=self)
        self.vb.setMaximumWidth(152)
        self.vb.setMinimumWidth(45)
        self.vb.setMouseEnabled(x=False, y=True)
        self.gradient = GradientEditorItem()
        self.gradient.setOrientation('right')
        self.gradient.loadPreset('grey')
        self.region = LinearRegionItem([0, 1], LinearRegionItem.Horizontal)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.axis = AxisItem('left',
                             linkView=self.vb,
                             maxTickLength=-10,
                             parent=self)
        self.layout.addItem(self.axis, 0, 0)
        self.layout.addItem(self.vb, 0, 1)
        self.layout.addItem(self.gradient, 0, 2)
        self.range = None
        self.gradient.setFlag(self.gradient.ItemStacksBehindParent)
        self.vb.setFlag(self.gradient.ItemStacksBehindParent)

        #self.grid = GridItem()
        #self.vb.addItem(self.grid)

        self.gradient.sigGradientChanged.connect(self.gradientChanged)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)
        self.vb.sigRangeChanged.connect(self.viewRangeChanged)
        self.plot = PlotDataItem()
        self.plot.rotate(90)
        self.fillHistogram(fillHistogram)

        self.vb.addItem(self.plot)
        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)
        #self.setSizePolicy(QtWidgets.QSizePolicy.Preferred, QtWidgets.QSizePolicy.Expanding)

    def fillHistogram(self, fill=True, level=0.0, color=(100, 100, 200)):
        if fill:
            self.plot.setFillLevel(level)
            self.plot.setFillBrush(color)
        else:
            self.plot.setFillLevel(None)

    #def sizeHint(self, *args):
    #return QtCore.QSizeF(115, 200)

    def paint(self, p, *args):
        pen = self.region.lines[0].pen
        rgn = self.getLevels()
        p1 = self.vb.mapFromViewToItem(
            self, Point(self.vb.viewRect().center().x(), rgn[0]))
        p2 = self.vb.mapFromViewToItem(
            self, Point(self.vb.viewRect().center().x(), rgn[1]))
        gradRect = self.gradient.mapRectToParent(self.gradient.gradRect.rect())
        for pen in [fn.mkPen('k', width=3), pen]:
            p.setPen(pen)
            p.drawLine(p1, gradRect.bottomLeft())
            p.drawLine(p2, gradRect.topLeft())
            p.drawLine(gradRect.topLeft(), gradRect.topRight())
            p.drawLine(gradRect.bottomLeft(), gradRect.bottomRight())
        #p.drawRect(self.boundingRect())

    def setHistogramRange(self, mn, mx, padding=0.1):
        """Set the Y range on the histogram plot. This disables auto-scaling."""
        self.vb.enableAutoRange(self.vb.YAxis, False)
        self.vb.setYRange(mn, mx, padding)

        #d = mx-mn
        #mn -= d*padding
        #mx += d*padding
        #self.range = [mn,mx]
        #self.updateRange()
        #self.vb.setMouseEnabled(False, True)
        #self.region.setBounds([mn,mx])

    def autoHistogramRange(self):
        """Enable auto-scaling on the histogram plot."""
        self.vb.enableAutoRange(self.vb.XYAxes)
        #self.range = None
        #self.updateRange()
        #self.vb.setMouseEnabled(False, False)

    #def updateRange(self):
    #self.vb.autoRange()
    #if self.range is not None:
    #self.vb.setYRange(*self.range)
    #vr = self.vb.viewRect()

    #self.region.setBounds([vr.top(), vr.bottom()])

    def setImageItem(self, img):
        """Set an ImageItem to have its levels and LUT automatically controlled
        by this HistogramLUTItem.
        """
        self.imageItem = weakref.ref(img)
        img.sigImageChanged.connect(self.imageChanged)
        img.setLookupTable(
            self.getLookupTable)  ## send function pointer, not the result
        #self.gradientChanged()
        self.regionChanged()
        self.imageChanged(autoLevel=True)
        #self.vb.autoRange()

    def viewRangeChanged(self):
        self.update()

    def gradientChanged(self):
        if self.imageItem() is not None:
            if self.gradient.isLookupTrivial():
                self.imageItem().setLookupTable(
                    None)  #lambda x: x.astype(np.uint8))
            else:
                self.imageItem().setLookupTable(
                    self.getLookupTable
                )  ## send function pointer, not the result

        self.lut = None
        #if self.imageItem is not None:
        #self.imageItem.setLookupTable(self.gradient.getLookupTable(512))
        self.sigLookupTableChanged.emit(self)

    def getLookupTable(self, img=None, n=None, alpha=None):
        """Return a lookup table from the color gradient defined by this
        HistogramLUTItem.
        """
        if n is None:
            if img.dtype == np.uint8:
                n = 256
            else:
                n = 512
        if self.lut is None:
            self.lut = self.gradient.getLookupTable(n, alpha=alpha)
        return self.lut

    def regionChanged(self):
        #if self.imageItem is not None:
        #self.imageItem.setLevels(self.region.getRegion())
        self.sigLevelChangeFinished.emit(self)
        #self.update()

    def regionChanging(self):
        if self.imageItem() is not None:
            self.imageItem().setLevels(self.region.getRegion())
        self.sigLevelsChanged.emit(self)
        self.update()

    def imageChanged(self, autoLevel=False, autoRange=False):
        profiler = debug.Profiler()
        img = self.imageItem().image
        if img is None:
            histRange = None
        else:
            histRange = (np.nanmin(img), np.nanmax(img))

        h = self.imageItem().getHistogram(range=histRange)
        profiler('get histogram')
        if h[0] is None:
            return
        self.plot.setData(*h)
        profiler('set plot')
        if autoLevel:
            mn = h[0][0]
            mx = h[0][-1]
            self.region.setRegion([mn, mx])
            profiler('set region')

    def getLevels(self):
        """Return the min and max levels.
        """
        return self.region.getRegion()

    def setLevels(self, mn, mx):
        """Set the min and max levels.
        """
        self.region.setRegion([mn, mx])