def rvapi_shutdown(self, amopt): """Return any results to jscofe Parameters ---------- amopt : dict AMPLE results dictionary with all information """ rvdoc = amopt['rvapi_document'] if not rvdoc: return work_dir = amopt['work_dir'] # Create dictionary we're going to return meta = {'first_tab_id': self.summary_tab_id, 'results': []} nresults = 0 if 'mrbump_results' in amopt and amopt['mrbump_results']: mrb_results = amopt['mrbump_results'] nresults = min(3, len(mrb_results)) if nresults > 0: root = os.path.join(work_dir, "..") for fdata in mrbump_util.ResultsSummary( mrb_results[:nresults]).topFiles(nresults): # Mangle paths fdata['pdb'] = os.path.relpath(root, fdata['pdb']) fdata['mtz'] = os.path.relpath(root, fdata['mtz']) meta['results'].append(fdata) # Commit to file logger.debug("Exporting pyrvapi metadata:\n{0}".format(meta)) pyrvapi.rvapi_put_meta(json.dumps(meta)) pyrvapi.rvapi_store_document2(rvdoc) return
def storeReportDocument(self, meta_str): if not self.rvapi_doc_path: self.rvapi_doc_path = "rvapi_document" if meta_str: pyrvapi.rvapi_put_meta(meta_str) pyrvapi.rvapi_store_document2(self.rvapi_doc_path) return
def rvapi_shutdown(self, amopt): """Return any results to jscofe Parameters ---------- amopt : dict AMPLE results dictionary with all information """ rvdoc = amopt['rvapi_document'] if not rvdoc: return # Create dictionary we're going to return meta = {'results': []} nresults = 0 if bool(amopt.get('mrbump_results')): mrb_results = amopt['mrbump_results'] nresults = min(3, len(mrb_results)) if nresults > 0: for fdata in mrbump_util.ResultsSummary( mrb_results[:nresults]).topFiles(nresults): # Mangle paths. relpath assumes args are directories so need to add .. fdata['pdb'] = self.fix_path(fdata['pdb']) fdata['mtz'] = self.fix_path(fdata['mtz']) meta['results'].append(fdata) # Commit to file logger.debug("Exporting pyrvapi metadata:\n{0}".format(meta)) pyrvapi.rvapi_put_meta(json.dumps(meta)) pyrvapi.rvapi_store_document2(rvdoc) return
def rvapi_shutdown(self, amopt): """Return any results to jscofe Parameters ---------- amopt : dict AMPLE results dictionary with all information """ rvdoc = amopt['rvapi_document'] if not rvdoc: return # Create dictionary we're going to return meta = {'results' : []} nresults = 0 if bool(amopt.get('mrbump_results')): mrb_results = amopt['mrbump_results'] nresults = min(3, len(mrb_results)) if nresults > 0: for fdata in mrbump_util.ResultsSummary(mrb_results[:nresults]).topFiles(nresults): # Mangle paths. relpath assumes args are directories so need to add .. fdata['pdb'] = self.fix_path(fdata['pdb']) fdata['mtz'] = self.fix_path(fdata['mtz']) meta['results'].append(fdata) # Commit to file logger.debug("Exporting pyrvapi metadata:\n{0}".format(meta)) pyrvapi.rvapi_put_meta(json.dumps(meta)) pyrvapi.rvapi_store_document2(rvdoc) return
def write_meta(self): self.output_meta["report_row"] = self.page_cursor[1] meta = json.dumps(self.output_meta, indent=2) with open(os.path.join(self.workdir, "ccp4go.meta.json"), "w") as f: f.write(meta) if self.rvapi_doc_path: pyrvapi.rvapi_put_meta(meta) pyrvapi.rvapi_store_document2(self.rvapi_doc_path) return
def store(self): pyrvapi.rvapi_put_meta(self.meta) pyrvapi.rvapi_store_document2(self._html_fname)
def save_document(self): pyrvapi.rvapi_put_meta(self.rvapi_meta.to_json()) pyrvapi.rvapi_store_document2(self.rvapi_document) pyrvapi.rvapi_keep_polling(True)
def save_document(self): pyrvapi.rvapi_put_meta(self.rvapi_meta.to_json()) pyrvapi.rvapi_store_document2(self.rvapi_document) pyrvapi.rvapi_keep_polling(True)