def P_CONTINUATION_WITH_EIGEN(self, *args):
"""
[str(p), float(min), float(max), int(points), *float(y-value)]
"""
self.setStatus('CONTINUING')
args = args[0]
print('Args', args)
pscan = pysces.PITCONScanUtils(self.model)
if len(args) == 4:
pscan.runContinuation(
args[0].strip(),
float(args[1].strip()),
float(args[2].strip()),
int(args[3].strip()),
)
elif len(args) == 5:
pscan.runContinuation(
args[0].strip(),
float(args[1].strip()),
float(args[2].strip()),
int(args[3].strip()),
float(args[4].strip()),
)
pscan.analyseData(analysis='eigen')
self.RESULT = (
pscan.res_idx,
pscan.res_metab,
pscan.res_flux,
pscan.getArrayListAsArray(pscan.res_eigen),
)
del pscan
return True
def P_CONTINUATION2D_WITH_EIGEN_USER(self, *args):
"""
[str(p), float(min), float(max), int(points), float(y-value), str(userNx)]
"""
self.setStatus('CONTINUING')
args = args[0]
print('Args', args)
userout = []
for a in range(len(args)):
args[a] = args[a].strip()
if a > 4:
userout.append(args[a])
pscan = pysces.PITCONScanUtils(self.model)
if len(userout) > 0:
pscan.setUserOuput(*userout)
pscan.runContinuation(args[0], float(args[1]), float(args[2]),
int(args[3]), float(args[4]))
pscan.analyseData(analysis='all')
self.RESULT = (
pscan.res_idx,
pscan.res_metab,
pscan.res_flux,
pscan.getArrayListAsArray(pscan.res_eigen),
pscan.res_user,
)
del pscan
return True
def P_CONTINUATION_WITH_EIGEN_USER(self, *args):
"""
[str(p), float(min), float(max), int(points), float(y-value)]
"""
self.setStatus('CONTINUING')
args = args[0]
print 'Args', args
pscan = pysces.PITCONScanUtils(self.model)
#TODO HARD CODED FOR NOW BUT NEEDS GENERALISATION
pscan.setUserOuput('ecR1_A','ecR2_A')
if len(args) == 4:
pscan.runContinuation(args[0].strip(),float(args[1].strip()), float(args[2].strip()), int(args[3].strip()))
elif len(args) == 5:
pscan.runContinuation(args[0].strip(), float(args[1].strip()), float(args[2].strip()), int(args[3].strip()), float(args[4].strip()))
pscan.analyseData(analysis='eigen')
self.RESULT = (pscan.res_idx, pscan.res_metab, pscan.res_flux, pscan.getArrayListAsArray(pscan.res_eigen), pscan.res_user)
del pscan
return True