def convert_from_ndarray_to_triqs(U_Q, Q, cell, kpts):
from pytriqs.gf import Gf, MeshBrillouinZone
from pytriqs.lattice.lattice_tools import BrillouinZone
from pytriqs.lattice.lattice_tools import BravaisLattice
bl = BravaisLattice(cell, [(0, 0, 0)])
bz = BrillouinZone(bl)
bzmesh = MeshBrillouinZone(bz, np.diag(np.array(kpts, dtype=np.int32)))
u_q = Gf(mesh=bzmesh, target_shape=U_Q.shape[1:])
tmp = np.array(Q * kpts[None, :], dtype=np.int)
I = [tuple(tmp[i]) for i in xrange(Q.shape[0])]
for qidx, i in enumerate(I):
for k in bzmesh:
# -- Generalize this transform absolute to relative k-points
a = cell[0, 0]
q = k * 0.5 * a / np.pi
j = tuple(np.array(kpts * q, dtype=np.int))
if i == j: u_q[k].data[:] = U_Q[qidx]
return u_q
def __init__ (self, units, hopping, orbital_positions = [ (0, 0, 0) ], orbital_names = [""]):
# the k are int32 which boost python does like to convert
def reg(k) : return tuple( int(x) for x in k)
self._hop = dict ( ( reg(k), np.array(v)) for k, v in hopping.items())
orb = dict ( (str(i), orb) for (i, orb) in enumerate(orbital_positions ))
self.bl = BravaisLattice(units, orbital_positions)
self.bz = BrillouinZone(self.bl)
self.tb = TightBinding(self.bl, self._hop) #, orbital_positions )
self.dim = self.bl.dim
self.NOrbitalsInUnitCell = self.bl.n_orbitals
self.Units = units
self.OrbitalPositions = orbital_positions
self.OrbitalNames = orbital_names
self.MuPattern = np.identity(self.NOrbitalsInUnitCell)
def make_calc():
# ------------------------------------------------------------------
# -- Read precomputed ED data
filename = "data_pomerol.tar.gz"
p = read_TarGZ_HDFArchive(filename)
# ------------------------------------------------------------------
# -- RPA tensor
from triqs_tprf.rpa_tensor import get_rpa_tensor
from triqs_tprf.rpa_tensor import fundamental_operators_from_gf_struct
fundamental_operators = fundamental_operators_from_gf_struct(p.gf_struct)
p.U_abcd = get_rpa_tensor(p.H_int, fundamental_operators)
# ------------------------------------------------------------------
# -- Generalized PH susceptibility
loc_bse = ParameterCollection()
loc_bse.chi_wnn = chi_from_gg2_PH(p.G_iw, p.G2_iw_ph)
loc_bse.chi0_wnn = chi0_from_gg2_PH(p.G_iw, p.G2_iw_ph)
loc_bse.gamma_wnn = inverse_PH(loc_bse.chi0_wnn) - inverse_PH(
loc_bse.chi_wnn)
loc_bse.chi_wnn_ref = inverse_PH(
inverse_PH(loc_bse.chi0_wnn) - loc_bse.gamma_wnn)
np.testing.assert_array_almost_equal(loc_bse.chi_wnn.data,
loc_bse.chi_wnn_ref.data)
loc_bse.chi0_w = trace_nn(loc_bse.chi0_wnn)
loc_bse.chi_w = trace_nn(loc_bse.chi_wnn)
# ------------------------------------------------------------------
# -- RPA, using BSE inverses and constant Gamma
loc_rpa = ParameterCollection()
loc_rpa.U_abcd = p.U_abcd
# -- Build constant gamma
loc_rpa.gamma_wnn = loc_bse.gamma_wnn.copy()
loc_rpa.gamma_wnn.data[:] = loc_rpa.U_abcd[None, None, None, ...]
# Nb! In the three frequency form $\Gamma \propto U/\beta^2$
loc_rpa.gamma_wnn.data[:] /= p.beta**2
loc_rpa.chi0_wnn = loc_bse.chi0_wnn
loc_rpa.chi0_w = loc_bse.chi0_w
# -- Solve RPA
loc_rpa.chi_wnn = inverse_PH(
inverse_PH(loc_rpa.chi0_wnn) - loc_rpa.gamma_wnn)
loc_rpa.chi_w = trace_nn(loc_rpa.chi_wnn)
# ------------------------------------------------------------------
# -- Bubble RPA on lattice
lat_rpa = ParameterCollection()
# -- Setup dummy lattice Green's function equal to local Green's function
bz = BrillouinZone(
BravaisLattice(units=np.eye(3), orbital_positions=[(0, 0, 0)]))
periodization_matrix = np.diag(np.array(list([1] * 3), dtype=np.int32))
kmesh = MeshBrillouinZone(bz, periodization_matrix)
wmesh = MeshImFreq(beta=p.beta, S='Fermion', n_max=p.nwf_gf)
lat_rpa.g_wk = Gf(mesh=MeshProduct(wmesh, kmesh),
target_shape=p.G_iw.target_shape)
lat_rpa.g_wk[:, Idx(0, 0, 0)] = p.G_iw
# -- chi0_wk bubble and chi_wk_rpa bubble RPA
from triqs_tprf.lattice_utils import imtime_bubble_chi0_wk
lat_rpa.chi0_wk = imtime_bubble_chi0_wk(lat_rpa.g_wk, nw=1)
from triqs_tprf.lattice import solve_rpa_PH
lat_rpa.chi_wk = solve_rpa_PH(lat_rpa.chi0_wk, p.U_abcd)
lat_rpa.chi0_w = lat_rpa.chi0_wk[:, Idx(0, 0, 0)]
lat_rpa.chi_w = lat_rpa.chi_wk[:, Idx(0, 0, 0)]
print '--> cf Tr[chi0] and chi0_wk'
print loc_rpa.chi0_w.data.reshape((4, 4)).real
print lat_rpa.chi0_w.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(loc_rpa.chi0_w.data,
lat_rpa.chi0_w.data,
decimal=2)
print 'ok!'
print '--> cf Tr[chi_rpa] and chi_wk_rpa'
print loc_rpa.chi_w.data.reshape((4, 4)).real
print lat_rpa.chi_w.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(loc_rpa.chi_w.data,
lat_rpa.chi_w.data,
decimal=2)
print 'ok!'
# ------------------------------------------------------------------
# -- Lattice BSE
lat_bse = ParameterCollection()
lat_bse.g_wk = lat_rpa.g_wk
from triqs_tprf.lattice import fourier_wk_to_wr
lat_bse.g_wr = fourier_wk_to_wr(lat_bse.g_wk)
from triqs_tprf.lattice import chi0r_from_gr_PH
lat_bse.chi0_wnr = chi0r_from_gr_PH(nw=1, nnu=p.nwf, gr=lat_bse.g_wr)
from triqs_tprf.lattice import chi0q_from_chi0r
lat_bse.chi0_wnk = chi0q_from_chi0r(lat_bse.chi0_wnr)
# -- Lattice BSE calc
from triqs_tprf.lattice import chiq_from_chi0q_and_gamma_PH
lat_bse.chi_kwnn = chiq_from_chi0q_and_gamma_PH(lat_bse.chi0_wnk,
loc_bse.gamma_wnn)
# -- Trace results
from triqs_tprf.lattice import chi0q_sum_nu_tail_corr_PH
from triqs_tprf.lattice import chi0q_sum_nu
lat_bse.chi0_wk_tail_corr = chi0q_sum_nu_tail_corr_PH(lat_bse.chi0_wnk)
lat_bse.chi0_wk = chi0q_sum_nu(lat_bse.chi0_wnk)
from triqs_tprf.lattice import chiq_sum_nu, chiq_sum_nu_q
lat_bse.chi_kw = chiq_sum_nu(lat_bse.chi_kwnn)
lat_bse.chi0_w_tail_corr = lat_bse.chi0_wk_tail_corr[:, Idx(0, 0, 0)]
lat_bse.chi0_w = lat_bse.chi0_wk[:, Idx(0, 0, 0)]
lat_bse.chi_w = lat_bse.chi_kw[Idx(0, 0, 0), :]
print '--> cf Tr[chi0_wnk] and chi0_wk'
print lat_bse.chi0_w_tail_corr.data.reshape((4, 4)).real
print lat_bse.chi0_w.data.reshape((4, 4)).real
print lat_rpa.chi0_w.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(lat_bse.chi0_w_tail_corr.data,
lat_rpa.chi0_w.data)
np.testing.assert_array_almost_equal(lat_bse.chi0_w.data,
lat_rpa.chi0_w.data,
decimal=2)
print 'ok!'
print '--> cf Tr[chi_kwnn] and chi_wk'
print lat_bse.chi_w.data.reshape((4, 4)).real
print loc_bse.chi_w.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(lat_bse.chi_w.data,
loc_bse.chi_w.data)
print 'ok!'
# ------------------------------------------------------------------
# -- Store to hdf5
filename = 'data_bse_rpa.h5'
with HDFArchive(filename, 'w') as res:
res['p'] = p
init_delta_ref = load['init_delta'].reshape(-1, nk**2) next_delta_ref = load['next_delta'].reshape(-1, nk**2) final_delta_ref = load['final_delta'].reshape(-1, nk**2) lamb_ref = load['lambda'] negative_final_delta_ref = load['negative_final_delta'].reshape(-1, nk**2) negative_lamb_ref = load['negative_lambda'] # ================== TPRF calculations ======================================== # -- Create dispersion relation Green's function object norbs = e_k_ref.shape[-1] units = [(1, 0, 0), (0, 1, 0), (0, 0, 1)] orbital_positions = [(0, 0, 0)] bl = BravaisLattice(units, orbital_positions) bz = BrillouinZone(bl) periodization_matrix = nk * np.eye(3, dtype=np.int32) periodization_matrix[2, 2] = 1 kmesh = MeshBrillouinZone(bz, periodization_matrix) e_k = Gf(mesh=kmesh, target_shape=[norbs, norbs]) e_k.data[:] = e_k_ref.reshape(nk**2, norbs, norbs) # -- Calculate bare Green's function wmesh = MeshImFreq(beta=beta, S='Fermion', n_max=n_max) g0_wk = lattice_dyson_g0_wk(mu=mu, e_k=e_k, mesh=wmesh) # -- Calculate bare bubble
def make_calc():
# ------------------------------------------------------------------
# -- Read precomputed ED data
filename = "bse_and_rpa_loc_vs_latt.tar.gz"
p = read_TarGZ_HDFArchive(filename)['p']
# ------------------------------------------------------------------
# -- RPA tensor
from triqs_tprf.rpa_tensor import get_rpa_tensor
from triqs_tprf.rpa_tensor import fundamental_operators_from_gf_struct
fundamental_operators = fundamental_operators_from_gf_struct(p.gf_struct)
p.U_abcd = get_rpa_tensor(p.H_int, fundamental_operators)
# ------------------------------------------------------------------
# -- Generalized PH susceptibility
loc_bse = ParameterCollection()
loc_bse.chi_wnn = chi_from_gg2_PH(p.G_iw, p.G2_iw_ph)
loc_bse.chi0_wnn = chi0_from_gg2_PH(p.G_iw, p.G2_iw_ph)
loc_bse.gamma_wnn = inverse_PH(loc_bse.chi0_wnn) - inverse_PH(
loc_bse.chi_wnn)
loc_bse.chi_wnn_ref = inverse_PH(
inverse_PH(loc_bse.chi0_wnn) - loc_bse.gamma_wnn)
np.testing.assert_array_almost_equal(loc_bse.chi_wnn.data,
loc_bse.chi_wnn_ref.data)
from triqs_tprf.bse import solve_local_bse
loc_bse.gamma_wnn_ref = solve_local_bse(loc_bse.chi0_wnn, loc_bse.chi_wnn)
np.testing.assert_array_almost_equal(loc_bse.gamma_wnn.data,
loc_bse.gamma_wnn_ref.data)
loc_bse.chi0_w = trace_nn(loc_bse.chi0_wnn)
loc_bse.chi_w = trace_nn(loc_bse.chi_wnn)
# ------------------------------------------------------------------
# -- RPA, using BSE inverses and constant Gamma
loc_rpa = ParameterCollection()
loc_rpa.chi0_wnn = loc_bse.chi0_wnn
loc_rpa.chi0_w = loc_bse.chi0_w
loc_rpa.U_abcd = p.U_abcd
# -- Build constant gamma
from triqs_tprf.rpa_tensor import get_gamma_rpa
loc_rpa.gamma_wnn = get_gamma_rpa(loc_rpa.chi0_wnn, loc_rpa.U_abcd)
# -- Solve RPA
loc_rpa.chi_wnn = inverse_PH(
inverse_PH(loc_rpa.chi0_wnn) - loc_rpa.gamma_wnn)
loc_rpa.chi_w = trace_nn(loc_rpa.chi_wnn)
# ------------------------------------------------------------------
# -- Bubble RPA on lattice
lat_rpa = ParameterCollection()
# -- Setup dummy lattice Green's function equal to local Green's function
bz = BrillouinZone(
BravaisLattice(units=np.eye(3), orbital_positions=[(0, 0, 0)]))
periodization_matrix = np.diag(np.array(list([1] * 3), dtype=np.int32))
kmesh = MeshBrillouinZone(bz, periodization_matrix)
wmesh = MeshImFreq(beta=p.beta, S='Fermion', n_max=p.nwf_gf)
lat_rpa.g_wk = Gf(mesh=MeshProduct(wmesh, kmesh),
target_shape=p.G_iw.target_shape)
lat_rpa.g_wk[:, Idx(0, 0, 0)] = p.G_iw
# -- chi0_wk bubble and chi_wk_rpa bubble RPA
from triqs_tprf.lattice_utils import imtime_bubble_chi0_wk
lat_rpa.chi0_wk = imtime_bubble_chi0_wk(lat_rpa.g_wk, nw=1)
from triqs_tprf.lattice import solve_rpa_PH
lat_rpa.chi_wk = solve_rpa_PH(lat_rpa.chi0_wk, p.U_abcd)
lat_rpa.chi0_w = lat_rpa.chi0_wk[:, Idx(0, 0, 0)]
lat_rpa.chi_w = lat_rpa.chi_wk[:, Idx(0, 0, 0)]
print '--> cf Tr[chi0] and chi0_wk'
print loc_rpa.chi0_w.data.reshape((4, 4)).real
print lat_rpa.chi0_w.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(loc_rpa.chi0_w.data,
lat_rpa.chi0_w.data,
decimal=2)
print 'ok!'
print '--> cf Tr[chi_rpa] and chi_wk_rpa'
print loc_rpa.chi_w.data.reshape((4, 4)).real
print lat_rpa.chi_w.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(loc_rpa.chi_w.data,
lat_rpa.chi_w.data,
decimal=2)
print 'ok!'
# ------------------------------------------------------------------
# -- Lattice BSE
lat_bse = ParameterCollection()
lat_bse.g_wk = lat_rpa.g_wk
lat_bse.mu = p.mu
lat_bse.e_k = Gf(mesh=kmesh, target_shape=p.G_iw.target_shape)
lat_bse.e_k[Idx(0, 0, 0)] = np.eye(2)
lat_bse.sigma_w = p.G_iw.copy()
lat_bse.sigma_w << iOmega_n + lat_bse.mu * np.eye(2) - lat_bse.e_k[Idx(
0, 0, 0)] - inverse(p.G_iw)
lat_bse.g_wk_ref = lat_bse.g_wk.copy()
lat_bse.g_wk_ref[:, Idx(0, 0, 0)] << inverse(iOmega_n +
lat_bse.mu * np.eye(2) -
lat_bse.e_k[Idx(0, 0, 0)] -
lat_bse.sigma_w)
np.testing.assert_array_almost_equal(lat_bse.g_wk.data,
lat_bse.g_wk_ref.data)
#for w in lat_bse.g_wk.mesh.components[0]:
# print w, lat_bse.g_wk[w, Idx(0,0,0)][0, 0]
from triqs_tprf.lattice import fourier_wk_to_wr
lat_bse.g_wr = fourier_wk_to_wr(lat_bse.g_wk)
from triqs_tprf.lattice import chi0r_from_gr_PH
lat_bse.chi0_wnr = chi0r_from_gr_PH(nw=1, nn=p.nwf, g_nr=lat_bse.g_wr)
from triqs_tprf.lattice import chi0q_from_chi0r
lat_bse.chi0_wnk = chi0q_from_chi0r(lat_bse.chi0_wnr)
#for n in lat_bse.chi0_wnk.mesh.components[1]:
# print n.value, lat_bse.chi0_wnk[Idx(0), n, Idx(0,0,0)][0,0,0,0]
# -- Lattice BSE calc
from triqs_tprf.lattice import chiq_from_chi0q_and_gamma_PH
lat_bse.chi_kwnn = chiq_from_chi0q_and_gamma_PH(lat_bse.chi0_wnk,
loc_bse.gamma_wnn)
# -- Lattice BSE calc with built in trace
from triqs_tprf.lattice import chiq_sum_nu_from_chi0q_and_gamma_PH
lat_bse.chi_kw_ref = chiq_sum_nu_from_chi0q_and_gamma_PH(
lat_bse.chi0_wnk, loc_bse.gamma_wnn)
# -- Lattice BSE calc with built in trace using g_wk
from triqs_tprf.lattice import chiq_sum_nu_from_g_wk_and_gamma_PH
lat_bse.chi_kw_tail_corr_ref = chiq_sum_nu_from_g_wk_and_gamma_PH(
lat_bse.g_wk, loc_bse.gamma_wnn)
# -- Trace results
from triqs_tprf.lattice import chi0q_sum_nu_tail_corr_PH
from triqs_tprf.lattice import chi0q_sum_nu
lat_bse.chi0_wk_tail_corr = chi0q_sum_nu_tail_corr_PH(lat_bse.chi0_wnk)
lat_bse.chi0_wk = chi0q_sum_nu(lat_bse.chi0_wnk)
from triqs_tprf.lattice import chiq_sum_nu, chiq_sum_nu_q
lat_bse.chi_kw = chiq_sum_nu(lat_bse.chi_kwnn)
np.testing.assert_array_almost_equal(lat_bse.chi_kw.data,
lat_bse.chi_kw_ref.data)
from triqs_tprf.bse import solve_lattice_bse
lat_bse.chi_kw_tail_corr, tmp = solve_lattice_bse(lat_bse.g_wk,
loc_bse.gamma_wnn)
from triqs_tprf.bse import solve_lattice_bse_e_k_sigma_w
lat_bse.chi_kw_tail_corr_new = solve_lattice_bse_e_k_sigma_w(
lat_bse.mu, lat_bse.e_k, lat_bse.sigma_w, loc_bse.gamma_wnn)
np.testing.assert_array_almost_equal(lat_bse.chi_kw_tail_corr.data,
lat_bse.chi_kw_tail_corr_ref.data)
np.testing.assert_array_almost_equal(lat_bse.chi_kw_tail_corr.data,
lat_bse.chi_kw_tail_corr_new.data)
np.testing.assert_array_almost_equal(lat_bse.chi_kw_tail_corr_ref.data,
lat_bse.chi_kw_tail_corr_new.data)
lat_bse.chi0_w_tail_corr = lat_bse.chi0_wk_tail_corr[:, Idx(0, 0, 0)]
lat_bse.chi0_w = lat_bse.chi0_wk[:, Idx(0, 0, 0)]
lat_bse.chi_w_tail_corr = lat_bse.chi_kw_tail_corr[Idx(0, 0, 0), :]
lat_bse.chi_w = lat_bse.chi_kw[Idx(0, 0, 0), :]
print '--> cf Tr[chi0_wnk] and chi0_wk'
print lat_bse.chi0_w_tail_corr.data.reshape((4, 4)).real
print lat_bse.chi0_w.data.reshape((4, 4)).real
print lat_rpa.chi0_w.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(lat_bse.chi0_w_tail_corr.data,
lat_rpa.chi0_w.data)
np.testing.assert_array_almost_equal(lat_bse.chi0_w.data,
lat_rpa.chi0_w.data,
decimal=2)
print 'ok!'
print '--> cf Tr[chi_kwnn] and chi_wk (without chi0 tail corr)'
print lat_bse.chi_w.data.reshape((4, 4)).real
print loc_bse.chi_w.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(lat_bse.chi_w.data,
loc_bse.chi_w.data)
print 'ok!'
# ------------------------------------------------------------------
# -- Use chi0 tail corrected trace to correct chi_rpa cf bubble
dchi_wk = lat_bse.chi0_wk_tail_corr - lat_bse.chi0_wk
dchi_w = dchi_wk[:, Idx(0, 0, 0)]
loc_rpa.chi_w_tail_corr = loc_rpa.chi_w + dchi_w
# -- this will be the same, but it will be close to the real physical value
lat_bse.chi_w_tail_corr_ref = lat_bse.chi_w + dchi_w
loc_bse.chi_w_tail_corr_ref = loc_bse.chi_w + dchi_w
print '--> cf Tr[chi_rpa] and chi_wk_rpa'
print loc_rpa.chi_w.data.reshape((4, 4)).real
print loc_rpa.chi_w_tail_corr.data.reshape((4, 4)).real
print lat_rpa.chi_w.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(loc_rpa.chi_w_tail_corr.data,
lat_rpa.chi_w.data,
decimal=3)
print '--> cf Tr[chi_kwnn] with tail corr (from chi0_wnk)'
print lat_bse.chi_w_tail_corr.data.reshape((4, 4)).real
print lat_bse.chi_w_tail_corr_ref.data.reshape((4, 4)).real
np.testing.assert_array_almost_equal(lat_bse.chi_w_tail_corr.data,
lat_bse.chi_w_tail_corr_ref.data)
print 'ok!'
# ------------------------------------------------------------------
# -- Store to hdf5
filename = 'data_bse_rpa.h5'
with HDFArchive(filename, 'w') as res:
res['p'] = p
""" Dimension of bz mesh is reduced from 3 to 2 by
broadcasting it over mpi...
Author: H. U.R. Strand (2019) """
import numpy as np
from pytriqs.gf import MeshBrillouinZone
from pytriqs.lattice.lattice_tools import BrillouinZone
from pytriqs.lattice.lattice_tools import BravaisLattice
bl = BravaisLattice(np.eye(3), [(0, 0, 0)])
bz = BrillouinZone(bl)
mesh = MeshBrillouinZone(bz, 8 * np.eye(3, dtype=np.int32))
import pytriqs.utility.mpi as mpi
if mpi.is_master_node():
m = MeshBrillouinZone(bz, 8 * np.eye(3, dtype=np.int32))
else:
m = None
m = mpi.bcast(m)
print mesh
print m
assert (mesh.domain.lattice.dim == m.domain.lattice.dim)