# action="store_true", dest="verbose",
# help="Turn on more verbose output.")
(options, args) = parser.parse_args()
if len(args) != 2:
parser.error(
"This program requires two arguments: an input sigest and an output csv file."
)
return options, args
if __name__ == '__main__':
options, args = parseOptions()
sigset = bee.parseSigSet(args[0])
rows = []
header = ["sub_id", "rec_id", "filename", "modality", "file_format"]
rows.append(header)
for each in sigset:
sub_id = each[0]
rec_id = each[1][0]['name']
filename = each[1][0]['file-name']
modality = each[1][0]['modality']
file_format = each[1][0]['file-format']
row = [sub_id, rec_id, filename, modality, file_format]
rows.append(row)
f = csv.writer(open(args[1], 'wb'))
f.writerows(rows)
#parser.add_option("-v", "--verbose",
# action="store_true", dest="verbose",
# help="Turn on more verbose output.")
(options, args) = parser.parse_args()
if len(args) != 2:
parser.error("This program requires two arguments: an input sigest and an output csv file.")
return options, args
if __name__ == '__main__':
options,args = parseOptions()
sigset = bee.parseSigSet(args[0])
rows = []
header = ["sub_id","rec_id","filename","modality","file_format"]
rows.append(header)
for each in sigset:
sub_id = each[0]
rec_id = each[1][0]['name']
filename = each[1][0]['file-name']
modality = each[1][0]['modality']
file_format = each[1][0]['file-format']
row = [sub_id,rec_id,filename,modality,file_format]
rows.append(row)
f = csv.writer(open(args[1],'wb'))
f.writerows(rows)
def parseOptions():
usage = "usage: %prog [options] <input.xml> <image_directory> <found.xml> [<missing.xml>]\nReads a sigset and removes any entries that cannot be associated with an image."
parser = optparse.OptionParser(usage)
#parser.add_option("-v", "--verbose",
# action="store_true", dest="verbose",
# help="Turn on more verbose output.")
(options, args) = parser.parse_args()
if len(args) not in [3,4]:
parser.error("This program requires at least three arguments: an input sigest, an image directory, and an output sigset.")
return options, args
if __name__ == '__main__':
options,args = parseOptions()
sigset = bee.parseSigSet(args[0])
imdir = args[1]
found,missing = locateFiles(sigset,imdir)
bee.saveSigset(found, args[2])
if len(args) >= 4:
bee.saveSigset(missing, args[3])