def _visualize(self, obj, **args): if isinstance(obj, EmanProtBoxing): coords = obj.getCoords() if coords: XmippViewer._visualize(self, obj.outputCoordinates) elif isinstance(obj, EmanProtInitModel): obj = obj.outputVolumes fn = obj.getFileName() labels = 'id enabled comment _filename ' objCommands = "'%s' '%s' '%s'" % (OBJCMD_CLASSAVG_PROJS, OBJCMD_PROJS, OBJCMD_INITVOL) self._views.append( vw.ObjectView( self._project, obj.strId(), fn, viewParams={ showj.MODE: showj.MODE_MD, showj.ORDER: labels, showj.VISIBLE: labels, showj.RENDER: '_filename', showj.OBJCMDS: objCommands }, ))
def _visualize(self, obj, **args): if isinstance(obj, EmanProtBoxing): XmippViewer._visualize(self, obj.outputCoordinates) elif isinstance(obj, EmanProtInitModel): XmippViewer._visualize(self, obj.outputVolumes)
def _visualize(self, obj, **args): if isinstance(obj, EmanProtBoxing): coords = obj.getCoords() if coords: XmippViewer._visualize(self, obj.outputCoordinates) elif isinstance(obj, EmanProtInitModel): XmippViewer._visualize(self, obj.outputVolumes)
def _visualize(self, obj, **args): if isinstance(obj, PcaFile): self._views.append(self.textView([obj.getFileName()], "PCA file")) elif isinstance(obj, SpiderProtCustomMask): mask = obj.outputMask self._visualize(mask) # Visualize the whole stack with all filenames self._views.append(DataView(mask.getFileName())) else: XmippViewer._visualize(self, obj) return self._views
def _visualize(self, obj, **args): if isinstance(obj, EmanProtBoxing): coords = obj.getCoords() if coords: XmippViewer._visualize(self, obj.outputCoordinates) elif isinstance(obj, EmanProtInitModel): obj = obj.outputVolumes fn = obj.getFileName() labels = 'id enabled comment _filename ' objCommands = "'%s' '%s' '%s'" % (OBJCMD_CLASSAVG_PROJS, OBJCMD_PROJS, OBJCMD_INITVOL) self._views.append(vw.ObjectView(self._project, obj.strId(), fn, viewParams={showj.MODE: showj.MODE_MD, showj.ORDER: labels, showj.VISIBLE: labels, showj.RENDER: '_filename', showj.OBJCMDS: objCommands}, ))
def _visualize(self, obj, **args): if hasattr(obj, 'outputVolumes'): XmippViewer._visualize(self, self.protocol.outputVolumes) fnBasis = self.protocol._getPath('basis.stk') if exists(fnBasis): self._views.append(DataView(fnBasis))
def _visualize(self, obj, **args): if hasattr(obj, 'outputVolumes'): XmippViewer._visualize(self,self.protocol.outputVolumes) fnBasis=self.protocol._getPath('basis.stk') if exists(fnBasis): self._views.append(DataView(fnBasis))