def show(self, form, *params):
finalResiduesList = self.getResidues(form)
provider = ListTreeProviderString(finalResiduesList)
dlg = dialog.ListDialog(
form.root, "Chain residues", provider,
"Select one residue (residue number, "
"residue name)")
form.setVar('lastResidueToRemove', dlg.values[0].get())
def show(self, form, *params):
attrsList = self.getInputAttributes(form)
finalAttrsList = []
for i in attrsList:
finalAttrsList.append(pwobj.String(i))
provider = ListTreeProviderString(finalAttrsList)
dlg = dialog.ListDialog(form.root, "Filter set", provider,
"Select one of the attributes")
form.setVar('rankingField', dlg.values[0].get())
def show(self, form, *params):
patchValues = [Integer(i) for i in range(32, 130, 8)]
# Get a data provider from the patchValues to be used in the tree (dialog)
provider = ListTreeProviderString(patchValues)
dlg = dialog.ListDialog(form.root, "Paych shape values", provider,
"Select one of the size values)")
# Set the chosen value back to the form
form.setVar(PATCH_SHAPE, dlg.values[0].get())
def show(self, form, *params):
protocol = form.protocol
label = params[0]
experiment = protocol.getAttributeValue('inputExperiment', None)
if experiment is None:
form.showError("Select input experiment first.")
else:
experiment.load()
dlg = dialog.ListDialog(form.root,
"Choose dose name",
DoseTreeProvider(experiment),
selectmode=self.getSelectMode())
if dlg.resultYes():
self.setFormValues(form, label, dlg.values)
def show(self, form, *params):
protocol = form.protocol
try:
models = self.getModelsChainsStep(protocol)
except Exception as e:
print "ERROR: ", e.message
return
self.editionListOfChains(models)
finalChainList = []
for i in self.chainList:
finalChainList.append(String(i))
provider = ListTreeProviderString(finalChainList)
dlg = dialog.ListDialog(
form.root, "Model chains", provider,
"Select one of the chains (model, chain, "
"number of chain residues)")
form.setVar('inputStructureChain', dlg.values[0].get())
def chooseTemplate(templates, parentWindow=None):
chosenTemplate = None
if len(templates) == 1:
chosenTemplate = templates[0]
else:
provider = pwgui.tree.ListTreeProviderTemplate(templates)
dlg = dialog.ListDialog(parentWindow,
"Workflow templates",
provider,
"Select one of the templates.",
selectOnDoubleClick=True)
if dlg.result == dialog.RESULT_YES:
chosenTemplate = dlg.values[0]
if chosenTemplate is not None:
print("Template to use: %s" % chosenTemplate)
# Replace environment variables
chosenTemplate.replaceEnvVariables()
return chosenTemplate
def show(self, form, *params):
label = params[0]
protocol = form.protocol
fnCSV = protocol.getAttributeValue('inputFile', "")
if not os.path.exists(fnCSV):
form.showError("Select a valid CSV input file first.")
else:
varNames = getVarNamesFromCSVfile(fnCSV)
tp = SimpleListTreeProvider(varNames, name="Variables")
dlg = dialog.ListDialog(form.root,
"Choose variable(s)",
tp,
selectmode='extended')
if dlg.resultYes():
strToAdd = ""
for value in dlg.values:
strToAdd += "\n%s ; [Units/none] ; [numeric/text] ; [time/label/measurement] ; [Comment]" % (
value.get())
if strToAdd != "":
currentValue = protocol.getAttributeValue(label, "")
form.setVar(label, currentValue + strToAdd)
def show(self, form, *params):
protocol = form.protocol
label = params[0]
fullParams = self._getAllParams(protocol)
experiment = None
if len(fullParams) > 1:
experiment = protocol.getAttributeValue(fullParams[1], None)
else:
experiment = protocol.getAttributeValue('inputExperiment', None)
if experiment is None:
form.showError("Select input experiment first.")
else:
experiment.load()
filterFunc = getattr(protocol, 'filterVarForWizard', None)
tp = FilterVariablesTreeProvider(experiment, filter=filterFunc)
dlg = dialog.ListDialog(form.root,
self.getTitle(),
tp,
selectmode=self.getSelectMode())
if dlg.resultYes():
self.setFormValues(form, label, dlg.values)
def getTemplate(root):
# Check if there is any .json.template in the template folder
# get the template folder
templateFolder = pw.getTemplatePath()
# Get all ".json.template" there
templates = []
for file in glob.glob1(templateFolder, "*.json.template"):
templates.append(String(file))
if len(templates):
if len(templates) == 1:
chosen = templates[0].get()
else:
provider = ListTreeProviderString(templates)
dlg = dialog.ListDialog(root, "Workflow templates", provider,
"Select one of the templates.")
chosen = dlg.values[0].get()
chosen = os.path.join(templateFolder, chosen)
print("Template to use: %s" % chosen)
with open(chosen, 'r') as myfile:
template = myfile.read()
# Replace environment variables
template = template % os.environ
return template
else:
raise Exception("There isn't any *.json.template at %s" % templates)
def show(self, form, *params):
# This are the greetings:
greetings = [
String("Hello world"),
String("Hola mundo"),
String("Bonjour le monde"),
String("Hallo Welt"),
String("Kon'nichiwa sekai"),
String("Nǐ hǎo, shìjiè"),
String("Ciao mondo"),
String("Hallo Wereld"),
String("Privet, mir")
]
# Get a data provider from the greetings to be used in the tree (dialog)
provider = ListTreeProviderString(greetings)
# Show the dialog
dlg = dialog.ListDialog(form.root, "Greetings from the world",
provider, "Select one of the greetings)")
# Set the chosen value back to the form
form.setVar('message', dlg.values[0].get())