def get_crystallographic_map(self, *args, **kwargs):
"""Obtain a crystallographic map specifying the best matching phase and
orientation at each probe position with corresponding metrics.
Returns
-------
cryst_map : CrystallographicMap
Crystallographic mapping results containing the best matching phase
and orientation at each navigation position with associated metrics.
The Signal at each navigation position is an array of,
[phase, np.array((z,x,z)), dict(metrics)]
which defines the phase, orientation as Euler angles in the zxz
convention and metrics associated with the matching.
Metrics for template matching results are
'correlation'
'orientation_reliability'
'phase_reliability'
"""
# TODO: Add alternative methods beyond highest correlation score.
crystal_map = self.map(crystal_from_template_matching,
inplace=False,
*args,
**kwargs)
cryst_map = CrystallographicMap(crystal_map)
cryst_map = transfer_navigation_axes(cryst_map, self)
cryst_map.method = 'template_matching'
return cryst_map
def get_crystallographic_map(self, *args, **kwargs):
"""Obtain a crystallographic map specifying the best matching
phase and orientation at each probe position with corresponding
correlation and reliabilty scores.
Returns
-------
cryst_map : CrystallographicMap
Contains the best matching phase and orientation along with
corresponding correlation and reliability scores at all navigation
positions.
"""
# TODO: Add alternative methods beyond highest correlation score at each
# navigation position.
# TODO Only keep a subset of the data for the map
crystal_map = self.map(crystal_from_matching_results,
inplace=False,
*args,
**kwargs)
cryst_map = CrystallographicMap(crystal_map)
cryst_map = carry_through_navigation_calibration(cryst_map, self)
return cryst_map
def get_crystallographic_map(self, *args, **kwargs):
"""Obtain a crystallographic map specifying the best matching
phase and orientation at each probe position with corresponding
correlation and reliabilty scores.
"""
#TODO: Add alternative methods beyond highest correlation score at each
#navigation position.
#TODO Only keep a subset of the data for the map
cryst_map = self.map(crystal_from_matching_results,
inplace=False,
*args,
**kwargs)
return CrystallographicMap(cryst_map)