}, parameter_descriptions={ 'metric': 'The alpha diversity metric to be computed.' }, output_descriptions={ 'alpha_diversity': 'Vector containing per-sample alpha diversities.' }, name='Alpha diversity (phylogenetic)', description=("Computes a user-specified phylogenetic alpha diversity " "metric for all samples in a feature table."), citations=[citations['faith1992conservation']]) plugin.methods.register_function( function=q2_diversity.alpha, inputs={'table': FeatureTable[Frequency]}, parameters={'metric': Str % Choices(alpha.non_phylogenetic_metrics())}, outputs=[('alpha_diversity', SampleData[AlphaDiversity])], input_descriptions={ 'table': ('The feature table containing the samples for which alpha ' 'diversity should be computed.') }, parameter_descriptions={ 'metric': 'The alpha diversity metric to be computed.' }, output_descriptions={ 'alpha_diversity': 'Vector containing per-sample alpha diversities.' }, name='Alpha diversity', description=("Computes a user-specified alpha diversity metric for all " "samples in a feature table."))
}, parameter_descriptions={ 'metric': 'The alpha diversity metric to be computed.' }, output_descriptions={ 'alpha_diversity': 'Vector containing per-sample alpha diversities.' }, name='Alpha diversity (phylogenetic)', description=("Computes a user-specified phylogenetic alpha diversity " "metric for all samples in a feature table.") ) plugin.methods.register_function( function=q2_diversity.alpha, inputs={'table': FeatureTable[Frequency] % Properties('uniform-sampling')}, parameters={'metric': Str % Choices(alpha.non_phylogenetic_metrics())}, outputs=[('alpha_diversity', SampleData[AlphaDiversity])], input_descriptions={ 'table': ('The feature table containing the samples for which alpha ' 'diversity should be computed.') }, parameter_descriptions={ 'metric': 'The alpha diversity metric to be computed.' }, output_descriptions={ 'alpha_diversity': 'Vector containing per-sample alpha diversities.' }, name='Alpha diversity', description=("Computes a user-specified alpha diversity metric for all " "samples in a feature table.") )