def test_make_fna(self):
"""test_make_fna should make fasta file as expected"""
fna_fp = os.path.join(self.sff_dir, 'test.fna')
fna_gz_fp = os.path.join(self.gz_sff_dir, 'test_gz.fna')
make_fna(self.sff_fp, fna_fp)
make_fna(self.sff_gz_fp, fna_gz_fp)
self.assertEqual(open(fna_fp).read(), fna_txt)
self.assertEqual(open(fna_gz_fp).read(), fna_txt)
def test_make_fna(self):
"""test_make_fna should make fasta file as expected"""
fna_fp = os.path.join(self.sff_dir, 'test.fna')
fna_gz_fp = os.path.join(self.gz_sff_dir, 'test_gz.fna')
make_fna(self.sff_fp, fna_fp)
make_fna(self.sff_gz_fp, fna_gz_fp)
self.assertEqual(open(fna_fp).read(), fna_txt)
self.assertEqual(open(fna_gz_fp).read(), fna_txt)
def test_make_fna(self):
"""test_make_fna should make fasta file as expected"""
make_fna(self.sff_fp)
expected_fp = os.path.join(self.sff_dir, 'test.fna')
observed = open(expected_fp).read()
expected = (
'>FA6P1OK01CGMHQ length=48 xy=0892_1356 region=1 run=R_2008_05_28_17_11_38_\n'
'ATCTGAGCTGGGTCATAGCTGCCTCCGTAGGAGGTGCCTCCCTACGGC\n'
)
self.assertEqual(observed, expected)