def test_make_qual(self):
"""test_make_qual should make qual file as expected"""
qual_fp = os.path.join(self.sff_dir, 'test.qual')
qual_gz_fp = os.path.join(self.gz_sff_dir, 'test_gz.qual')
make_qual(self.sff_fp, qual_fp)
make_qual(self.sff_gz_fp, qual_gz_fp)
self.assertEqual(open(qual_fp).read(), qual_txt)
self.assertEqual(open(qual_gz_fp).read(), qual_txt)
def test_make_qual(self):
"""test_make_qual should make qual file as expected"""
qual_fp = os.path.join(self.sff_dir, 'test.qual')
qual_gz_fp = os.path.join(self.gz_sff_dir, 'test_gz.qual')
make_qual(self.sff_fp, qual_fp)
make_qual(self.sff_gz_fp, qual_gz_fp)
self.assertEqual(open(qual_fp).read(), qual_txt)
self.assertEqual(open(qual_gz_fp).read(), qual_txt)
def test_make_qual(self):
"""test_make_qual should make qual file as expected"""
make_qual(self.sff_fp)
expected_fp = os.path.join(self.sff_dir, 'test.qual')
observed = open(expected_fp).read()
expected = (
'>FA6P1OK01CGMHQ length=48 xy=0892_1356 region=1 run=R_2008_05_28_17_11_38_\n'
'32 32 32 32 32 32 32 25 25 21 21 21 28 32 32 31 30 30 32 32 32 33 31 25 18 18 '
'20 18 32 30 28 23 22 22 24 28 18 19 18 16 16 16 17 18 13 17 27 21\n'
)
self.assertEqual(observed, expected)
