def _(i):
qy.py_printf("i = %i\n", i)
def _(i):
# compute responsibilities
r_KN = this_r_KN.using(this_r_KN_data.value)
@qy.for_(N)
def _(n):
sample = samples.at(n)
qy.value_from_any(-numpy.inf).store(total)
@qy.for_(K)
def _(k):
responsibility = r_KN.at(k, n).data
self._sub_emitter.ll(
StridedArray.from_typed_pointer(
out.at(k).data.gep(0, 1)),
StridedArray.from_typed_pointer(sample.data),
responsibility,
)
log_add_double(total.load(),
responsibility.load()).store(total)
total_value = total.load()
@qy.if_else(total_value == -numpy.inf)
def _(then):
if then:
@qy.for_(K)
def _(k):
qy.value_from_any(1.0 / K).store(
r_KN.at(k, n).data)
else:
@qy.for_(K)
def _(k):
responsibility = r_KN.at(k, n).data
qy.exp(responsibility.load() -
total_value).store(responsibility)
# estimate new mixture and component parameters
@qy.for_(K)
def _(k):
component = out.at(k).data
self._sub_emitter.map(
prior.at(k),
samples,
r_KN.at(k),
StridedArray.from_typed_pointer(component.gep(0, 1)),
)
qy.value_from_any(0.0).store(total)
@qy.for_(N)
def _(n):
(total.load() + r_KN.at(k, n).data.load()).store(total)
(total.load() / float(N)).store(component.gep(0, 0))
# check for termination
last_r_KN = this_r_KN.using(last_r_KN_data.value)
@qy.if_(i > 0)
def _():
qy.value_from_any(0.0).store(total)
@qy.for_(K)
def _(k):
@qy.for_(N)
def _(n):
delta = r_KN.at(k, n).data.load() - last_r_KN.at(
k, n).data.load()
(total.load() + abs(delta)).store(total)
@qy.if_(total.load() < 1e-12)
def _():
qy.break_()
total_delta = total.load()
# swap the responsibility matrices
temp_r_KN_data_value = this_r_KN_data.value
this_r_KN_data.set(last_r_KN_data.value)
last_r_KN_data.set(temp_r_KN_data_value)
# compute the ll at this step
@qy.for_(N)
def _(n):
sample = samples.at(n)
total_ll = total.load()
qy.value_from_any(-numpy.inf).store(total)
@qy.for_(K)
def _(k):
self._sub_emitter.ll(
StridedArray.from_typed_pointer(
out.at(k).data.gep(0, 1)),
StridedArray.from_typed_pointer(sample.data),
component_ll,
)
log_add_double(
total.load(),
qy.log(out.at(k).data.gep(0, 0).load()) + component_ll.load(),
) \
.store(total)
(total_ll + total.load()).store(total)
total_ll = total.load()
# be informative
qy.py_printf("after EM step %i: delta %s; ll %s\n", i, total_delta,
total_ll)
def _(i):
# compute responsibilities
r_KN = this_r_KN.using(this_r_KN_data.value)
@qy.for_(N)
def _(n):
sample = samples.at(n)
qy.value_from_any(-numpy.inf).store(total)
@qy.for_(K)
def _(k):
responsibility = r_KN.at(k, n).data
self._sub_emitter.ll(
StridedArray.from_typed_pointer(out.at(k).data.gep(0, 1)),
StridedArray.from_typed_pointer(sample.data),
responsibility,
)
log_add_double(total.load(), responsibility.load()).store(total)
total_value = total.load()
@qy.if_else(total_value == -numpy.inf)
def _(then):
if then:
@qy.for_(K)
def _(k):
qy.value_from_any(1.0 / K).store(r_KN.at(k, n).data)
else:
@qy.for_(K)
def _(k):
responsibility = r_KN.at(k, n).data
qy.exp(responsibility.load() - total_value).store(responsibility)
# estimate new mixture and component parameters
@qy.for_(K)
def _(k):
component = out.at(k).data
self._sub_emitter.map(
prior.at(k),
samples,
r_KN.at(k),
StridedArray.from_typed_pointer(component.gep(0, 1)),
)
qy.value_from_any(0.0).store(total)
@qy.for_(N)
def _(n):
(total.load() + r_KN.at(k, n).data.load()).store(total)
(total.load() / float(N)).store(component.gep(0, 0))
# check for termination
last_r_KN = this_r_KN.using(last_r_KN_data.value)
@qy.if_(i > 0)
def _():
qy.value_from_any(0.0).store(total)
@qy.for_(K)
def _(k):
@qy.for_(N)
def _(n):
delta = r_KN.at(k, n).data.load() - last_r_KN.at(k, n).data.load()
(total.load() + abs(delta)).store(total)
@qy.if_(total.load() < 1e-12)
def _():
qy.break_()
total_delta = total.load()
# swap the responsibility matrices
temp_r_KN_data_value = this_r_KN_data.value
this_r_KN_data.set(last_r_KN_data.value)
last_r_KN_data.set(temp_r_KN_data_value)
# compute the ll at this step
@qy.for_(N)
def _(n):
sample = samples.at(n)
total_ll = total.load()
qy.value_from_any(-numpy.inf).store(total)
@qy.for_(K)
def _(k):
self._sub_emitter.ll(
StridedArray.from_typed_pointer(out.at(k).data.gep(0, 1)),
StridedArray.from_typed_pointer(sample.data),
component_ll,
)
log_add_double(
total.load(),
qy.log(out.at(k).data.gep(0, 0).load()) + component_ll.load(),
) \
.store(total)
(total_ll + total.load()).store(total)
total_ll = total.load()
# be informative
qy.py_printf("after EM step %i: delta %s; ll %s\n", i, total_delta, total_ll)