def test_deploy_ramp_event(session_scope_function):
database_config = read_config(database_config_template())
event_config_filename = ramp_config_template()
event_config = read_config(event_config_filename)
ramp_config = generate_ramp_config(event_config)
deploy_ramp_event(database_config_template(), ramp_config_template())
# simulate that we add users and sign-up for the event and that they
# submitted the starting kit
with session_scope(database_config['sqlalchemy']) as session:
add_users(session)
sign_up_team(session, ramp_config['event_name'], 'test_user')
submit_starting_kits(session, ramp_config['event_name'], 'test_user',
ramp_config['ramp_kit_submissions_dir'])
# run the dispatcher on the event which are in the dataset
dispatcher = Dispatcher(config=database_config,
event_config=event_config,
worker=CondaEnvWorker,
n_workers=-1,
hunger_policy='exit')
dispatcher.launch()
# the iris kit contain a submission which should fail for a user
with session_scope(database_config['sqlalchemy']) as session:
submission = get_submissions(session,
event_config['ramp']['event_name'],
'training_error')
assert len(submission) == 1
def test_aws_dispatcher(session_toy): # noqa
# copy of test_integration_dispatcher but with AWS
if not os.path.isfile(os.path.join(HERE, 'config.yml')):
pytest.skip("Only for local tests for now")
config = read_config(database_config_template())
event_config = ramp_config_template()
event_config = read_config(event_config)
# patch the event_config to match local config.yml for AWS
aws_event_config = read_config(os.path.join(HERE, 'config.yml'))
event_config['worker'] = aws_event_config['worker']
dispatcher = Dispatcher(config=config,
event_config=event_config,
worker=AWSWorker,
n_workers=-1,
hunger_policy='exit')
dispatcher.launch()
# the iris kit contain a submission which should fail for each user
submission = get_submissions(session_toy,
event_config['ramp']['event_name'],
'training_error')
assert len(submission) == 2
def fetch_from_db(self, session):
"""Fetch the submission from the database and create the workers."""
submissions = get_submissions(session,
self._ramp_config['event_name'],
state='new')
if not submissions:
return
for submission_id, submission_name, _ in submissions:
# do not train the sandbox submission
submission = get_submission_by_id(session, submission_id)
if not submission.is_not_sandbox:
continue
# create the worker
worker = self.worker(self._worker_config, submission_name)
set_submission_state(session, submission_id, 'sent_to_training')
update_user_leaderboards(
session,
self._ramp_config['event_name'],
submission.team.name,
new_only=True,
)
self._awaiting_worker_queue.put_nowait(
(worker, (submission_id, submission_name)))
logger.info('Submission {} added to the queue of submission to be '
'processed'.format(submission_name))
def test_dispatcher_worker_retry(session_toy):
config = read_config(database_config_template())
event_config = read_config(ramp_config_template())
dispatcher = Dispatcher(config=config,
event_config=event_config,
worker=CondaEnvWorker,
n_workers=10,
hunger_policy='exit')
dispatcher.fetch_from_db(session_toy)
dispatcher.launch_workers(session_toy)
# Get one worker and set status to 'retry'
worker, (submission_id, submission_name) = \
dispatcher._processing_worker_queue.get()
setattr(worker, 'status', 'retry')
assert worker.status == 'retry'
# Add back to queue
dispatcher._processing_worker_queue.put_nowait(
(worker, (submission_id, submission_name)))
while not dispatcher._processing_worker_queue.empty():
dispatcher.collect_result(session_toy)
submissions = get_submissions(session_toy, 'iris_test', 'new')
assert submission_name in [sub[1] for sub in submissions]
def test_error_handling_worker_setup_error(session_toy, caplog):
# make sure the error on the worker.setup is dealt with correctly
# set mock worker
class Worker_mock():
def __init__(self, *args, **kwargs):
self.state = None
def setup(self):
raise Exception('Test error')
def teardown(self):
pass
config = read_config(database_config_template())
event_config = read_config(ramp_config_template())
worker = Worker_mock()
dispatcher = Dispatcher(config=config,
event_config=event_config,
worker=Worker_mock,
n_workers=-1,
hunger_policy='exit')
dispatcher.launch()
submissions = get_submissions(session_toy,
event_config['ramp']['event_name'],
'checking_error')
assert len(submissions) == 6
worker.status = 'error'
assert 'Test error' in caplog.text
def test_add_submission_create_new_submission(base_db):
# check that we can make a new submission to the database
# it will require to have already a team and an event
session = base_db
config = ramp_config_template()
event_name, username = _setup_sign_up(session)
ramp_config = generate_ramp_config(read_config(config))
submission_name = 'random_forest_10_10'
path_submission = os.path.join(
os.path.dirname(ramp_config['ramp_sandbox_dir']), submission_name)
add_submission(session, event_name, username, submission_name,
path_submission)
all_submissions = get_submissions(session, event_name, None)
# check that the submissions have been copied
for sub_id, _, _ in all_submissions:
sub = get_submission_by_id(session, sub_id)
assert os.path.exists(sub.path)
assert os.path.exists(os.path.join(sub.path, 'classifier.py'))
# `sign_up_team` make a submission (sandbox) by user. This submission will
# be the third submission.
assert len(all_submissions) == 3
# check that the number of submissions for an event was updated
event = session.query(Event).filter(Event.name == event_name).one_or_none()
assert event.n_submissions == 1
submission = get_submission_by_name(session, event_name, username,
submission_name)
assert submission.name == submission_name
submission_file = submission.files[0]
assert submission_file.name == 'classifier'
assert submission_file.extension == 'py'
assert (os.path.join('submission_000000005', 'classifier.py')
in submission_file.path)
def test_add_submission_create_new_submission(base_db):
# check that we can make a new submission to the database
# it will require to have already a team and an event
session = base_db
config = read_config(ramp_config_template())
event_name, username = _setup_sign_up(session, config)
ramp_config = generate_ramp_config(config)
submission_name = 'random_forest_10_10'
path_submission = os.path.join(
os.path.dirname(ramp_config['ramp_sandbox_dir']), submission_name)
add_submission(session, event_name, username, submission_name,
path_submission)
all_submissions = get_submissions(session, event_name, None)
# `sign_up_team` make a submission (sandbox) by user. This submission will
# be the third submission.
assert len(all_submissions) == 3
submission = get_submission_by_name(session, event_name, username,
submission_name)
assert submission.name == submission_name
submission_file = submission.files[0]
assert submission_file.name == 'classifier'
assert submission_file.extension == 'py'
assert (os.path.join('submission_000000005', 'classifier.py')
in submission_file.path)
def test_unit_test_dispatcher(session_toy):
# make sure that the size of the list is bigger than the number of
# submissions
config = read_config(database_config_template())
event_config = read_config(ramp_config_template())
dispatcher = Dispatcher(config=config,
event_config=event_config,
worker=CondaEnvWorker,
n_workers=100,
hunger_policy='exit')
# check that all the queue are empty
assert dispatcher._awaiting_worker_queue.empty()
assert dispatcher._processing_worker_queue.empty()
assert dispatcher._processed_submission_queue.empty()
# check that all submissions are queued
submissions = get_submissions(session_toy, 'iris_test', 'new')
dispatcher.fetch_from_db(session_toy)
# we should remove the starting kit from the length of the submissions for
# each user
assert dispatcher._awaiting_worker_queue.qsize() == len(submissions) - 2
submissions = get_submissions(session_toy, 'iris_test', 'sent_to_training')
assert len(submissions) == 6
# start the training
dispatcher.launch_workers(session_toy)
# be sure that the training is finished
while not dispatcher._processing_worker_queue.empty():
dispatcher.collect_result(session_toy)
assert len(get_submissions(session_toy, 'iris_test', 'new')) == 2
assert (len(get_submissions(session_toy, 'iris_test',
'training_error')) == 2)
assert len(get_submissions(session_toy, 'iris_test', 'tested')) == 4
dispatcher.update_database_results(session_toy)
assert dispatcher._processed_submission_queue.empty()
event = get_event(session_toy, 'iris_test')
assert event.private_leaderboard_html
assert event.public_leaderboard_html_with_links
assert event.public_leaderboard_html_no_links
assert event.failed_leaderboard_html
assert event.new_leaderboard_html is None
assert event.public_competition_leaderboard_html
assert event.private_competition_leaderboard_html
def test_get_submissions(session_scope_module, state, expected_id):
submissions = get_submissions(session_scope_module, 'iris_test',
state=state)
assert len(submissions) == len(expected_id)
for submission_id, sub_name, sub_path in submissions:
assert submission_id in expected_id
assert 'submission_{:09d}'.format(submission_id) == sub_name
path_file = os.path.join('submission_{:09d}'.format(submission_id),
'classifier.py')
assert path_file in sub_path[0]
def test_integration_dispatcher(session_toy):
config = read_config(database_config_template())
event_config = read_config(ramp_config_template())
dispatcher = Dispatcher(config=config,
event_config=event_config,
worker=CondaEnvWorker,
n_worker=-1,
hunger_policy='exit')
dispatcher.launch()
# the iris kit contain a submission which should fail for each user
submission = get_submissions(session_toy,
event_config['ramp']['event_name'],
'training_error')
assert len(submission) == 2
def test_dispatcher_aws_not_launching(session_toy_aws, caplog):
# given the test config file the instance should not be able to launch
# due to authentication error
# after unsuccessful try the worker should teardown
config = read_config(database_config_template())
event_config = read_config(ramp_aws_config_template())
dispatcher = Dispatcher(config=config,
event_config=event_config,
worker=AWSWorker,
n_workers=10,
hunger_policy='exit')
dispatcher.fetch_from_db(session_toy_aws)
submissions = get_submissions(session_toy_aws, 'iris_aws_test', 'new')
dispatcher.launch_workers(session_toy_aws)
assert 'AuthFailure' in caplog.text
# training should not have started
assert 'training' not in caplog.text
num_running_workers = dispatcher._processing_worker_queue.qsize()
assert num_running_workers == 0
submissions2 = get_submissions(session_toy_aws, 'iris_aws_test', 'new')
# assert that all the submissions are still in the 'new' state
assert len(submissions) == len(submissions2)
def test_submit_starting_kits(base_db):
session = base_db
config = ramp_config_iris()
event_name, username = _setup_sign_up(session)
ramp_config = generate_ramp_config(read_config(config))
submit_starting_kits(session, event_name, username,
ramp_config['ramp_kit_submissions_dir'])
submissions = get_submissions(session, event_name, None)
submissions_id = [sub[0] for sub in submissions]
assert len(submissions) == 5
expected_submission_name = {'starting_kit', 'starting_kit_test',
'random_forest_10_10', 'error'}
submission_name = {get_submission_by_id(session, sub_id).name
for sub_id in submissions_id}
assert submission_name == expected_submission_name
def test_dispatcher_timeout(session_toy):
config = read_config(database_config_template())
event_config = read_config(ramp_config_template())
dispatcher = Dispatcher(config=config,
event_config=event_config,
worker=CondaEnvWorker,
n_workers=-1,
hunger_policy='exit')
# override the timeout of the worker
dispatcher._worker_config["timeout"] = 1
dispatcher.launch()
# we should have at least 3 submissions which will fail:
# 2 for errors and 1 for timeout
submissions = get_submissions(session_toy,
event_config['ramp']['event_name'],
'training_error')
assert len(submissions) >= 2
def test_submit_starting_kits(base_db):
session = base_db
config = read_config(ramp_config_template())
event_name, username = _setup_sign_up(session, config)
ramp_config = generate_ramp_config(config)
submit_starting_kits(
session, event_name, username,
os.path.join(ramp_config['ramp_kits_dir'], ramp_config['event'],
config['ramp']['submissions_dir']))
submissions = get_submissions(session, event_name, None)
submissions_id = [sub[0] for sub in submissions]
assert len(submissions) == 5
expected_submission_name = {
'starting_kit', 'starting_kit_test', 'random_forest_10_10', 'error'
}
submission_name = set(
get_submission_by_id(session, sub_id).name
for sub_id in submissions_id)
assert submission_name == expected_submission_name
def launch(self):
"""Launch the dispatcher."""
logger.info('Starting the RAMP dispatcher')
with session_scope(self._database_config) as session:
logger.info('Open a session to the database')
try:
while not self._poison_pill:
self.fetch_from_db(session)
self.launch_workers(session)
self.collect_result(session)
self.update_database_results(session)
finally:
# reset the submissions to 'new' in case of error or unfinished
# training
submissions = get_submissions(session,
self._ramp_config['event_name'],
state=None)
for submission_id, _, _ in submissions:
submission_state = get_submission_state(
session, submission_id)
if submission_state in ('training', 'send_to_training'):
set_submission_state(session, submission_id, 'new')
logger.info('Dispatcher killed by the poison pill')
def test_get_submission_unknown_state(session_scope_module):
with pytest.raises(UnknownStateError, match='Unrecognized state'):
get_submissions(session_scope_module, 'iris_test', state='whatever')
def test_info_on_training_error(test_launch_ec2_instances, upload_submission,
launch_train, is_spot_terminated,
training_finished, training_successful,
get_log_content, check_instance_status,
download_log, session_toy_aws, caplog):
# make sure that the Python error from the solution is passed to the
# dispatcher
# everything shoud be mocked as correct output from AWS instances
# on setting up the instance and loading the submission
# mock dummy AWS instance
class DummyInstance:
id = 1
test_launch_ec2_instances.return_value = (DummyInstance(), ), 0
upload_submission.return_value = 0
launch_train.return_value = 0
is_spot_terminated.return_value = 0
training_finished.return_value = False
download_log.return_value = 0
config = read_config(database_config_template())
event_config = read_config(ramp_aws_config_template())
dispatcher = Dispatcher(config=config,
event_config=event_config,
worker=AWSWorker,
n_workers=10,
hunger_policy='exit')
dispatcher.fetch_from_db(session_toy_aws)
dispatcher.launch_workers(session_toy_aws)
num_running_workers = dispatcher._processing_worker_queue.qsize()
# worker, (submission_id, submission_name) = \
# dispatcher._processing_worker_queue.get()
# assert worker.status == 'running'
submissions = get_submissions(session_toy_aws, 'iris_aws_test', 'training')
ids = [submissions[idx][0] for idx in range(len(submissions))]
assert len(submissions) > 1
assert num_running_workers == len(ids)
dispatcher.time_between_collection = 0
training_successful.return_value = False
# now we will end the submission with training error
training_finished.return_value = True
training_error_msg = 'Python error here'
get_log_content.return_value = training_error_msg
check_instance_status.return_value = 'finished'
dispatcher.collect_result(session_toy_aws)
# the worker which we were using should have been teared down
num_running_workers = dispatcher._processing_worker_queue.qsize()
assert num_running_workers == 0
submissions = get_submissions(session_toy_aws, 'iris_aws_test',
'training_error')
assert len(submissions) == len(ids)
submission = get_submission_by_id(session_toy_aws, submissions[0][0])
assert training_error_msg in submission.error_msg
def score_plot(session, event):
from bokeh.plotting import figure
from bokeh.models.sources import ColumnDataSource
from bokeh.models.formatters import DatetimeTickFormatter
submissions = get_submissions(session, event.name, None)
submissions = [
get_submission_by_id(session, sub_id) for sub_id, _, _ in submissions
if get_submission_by_id(session, sub_id).is_public_leaderboard
and get_submission_by_id(session, sub_id).is_valid
]
score_names = [score_type.name for score_type in event.score_types]
scoress = np.array([[
score.valid_score_cv_bag
for score in submission.ordered_scores(score_names)
] for submission in submissions]).T
score_plot_df = pd.DataFrame()
score_plot_df['submitted at (UTC)'] = [
submission.submission_timestamp for submission in submissions
]
score_plot_df['contributivity'] = [
submission.contributivity for submission in submissions
]
score_plot_df['historical contributivity'] = [
submission.historical_contributivity for submission in submissions
]
for score_name in score_names: # to make sure the column is created
score_plot_df[score_name] = 0
for score_name, scores in zip(score_names, scoress):
score_plot_df[score_name] = scores
score_name = event.official_score_name
score_plot_df = score_plot_df[
score_plot_df['submitted at (UTC)'] > event.opening_timestamp]
score_plot_df = score_plot_df.sort_values('submitted at (UTC)')
score_plot_df = add_pareto(score_plot_df, score_name,
event.official_score_type.worst,
event.official_score_type.is_lower_the_better)
is_open = (score_plot_df['submitted at (UTC)'] >
event.public_opening_timestamp).values
max_contributivity = max(0.0000001,
max(score_plot_df['contributivity'].values))
max_historical_contributivity = max(
0.0000001, max(score_plot_df['historical contributivity'].values))
fill_color_1 = (176, 23, 31)
fill_color_2 = (16, 78, 139)
fill_colors_1 = color_gradient(
fill_color_1,
score_plot_df['contributivity'].values / max_contributivity)
fill_colors_2 = color_gradient(
fill_color_2, score_plot_df['historical contributivity'].values /
max_historical_contributivity)
fill_colors = np.minimum(fill_colors_1, fill_colors_2).astype(int)
fill_colors = ["#%02x%02x%02x" % (c[0], c[1], c[2]) for c in fill_colors]
score_plot_df['x'] = score_plot_df['submitted at (UTC)']
score_plot_df['y'] = score_plot_df[score_name]
score_plot_df['line_color'] = 'royalblue'
score_plot_df['circle_size'] = 8
score_plot_df['line_color'] = 'royalblue'
score_plot_df.loc[is_open, 'line_color'] = 'coral'
score_plot_df['fill_color'] = fill_colors
score_plot_df['fill_alpha'] = 0.5
score_plot_df['line_width'] = 0
score_plot_df['label'] = 'closed phase'
score_plot_df.loc[is_open, 'label'] = 'open phase'
source = ColumnDataSource(score_plot_df)
pareto_df = score_plot_df[score_plot_df[score_name +
' pareto'] == 1].copy()
pareto_df = pareto_df.append(pareto_df.iloc[-1])
pareto_df.iloc[-1,
pareto_df.columns.get_loc('x')] = (max(score_plot_df['x']))
pareto_df = make_step_df(pareto_df,
event.official_score_type.is_lower_the_better)
source_pareto = ColumnDataSource(pareto_df)
tools = ['pan,wheel_zoom,box_zoom,reset,save,tap']
p = figure(plot_width=900, plot_height=600, tools=tools, title='Scores')
p.circle('x',
'y',
size='circle_size',
line_color='line_color',
fill_color='fill_color',
fill_alpha='fill_alpha',
line_width=1,
source=source,
legend='label')
p.line('x',
'y',
line_width=3,
line_color='goldenrod',
source=source_pareto,
legend='best score',
alpha=0.9)
p.xaxis.formatter = DatetimeTickFormatter(
hours=['%d %B %Y'],
days=['%d %B %Y'],
months=['%d %B %Y'],
years=['%d %B %Y'],
)
p.xaxis.major_label_orientation = np.pi / 4
if event.official_score_type.is_lower_the_better:
p.yaxis.axis_label = score_name + ' (the lower the better)'
p.legend.location = 'top_right'
else:
p.yaxis.axis_label = score_name + ' (the greater the better)'
p.legend.location = 'bottom_right'
p.xaxis.axis_label = 'submission timestamp (UTC)'
p.xaxis.axis_label_text_font_size = '14pt'
p.yaxis.axis_label_text_font_size = '14pt'
p.legend.label_text_font_size = '14pt'
p.title.text_font_size = '16pt'
p.xaxis.major_label_text_font_size = '10pt'
p.yaxis.major_label_text_font_size = '10pt'
return p
def _reset_submission_after_failure(session, even_name):
submissions = get_submissions(session, even_name, state=None)
for submission_id, _, _ in submissions:
submission_state = get_submission_state(session, submission_id)
if submission_state in ('training', 'send_to_training'):
set_submission_state(session, submission_id, 'new')
