def init_graph(self, name):
config=getUtility(Interface, name='configuration')
graph_descr=config['graph_'+name]
contains=graph_descr.get('contains', None)
identifier=graph_descr.get('id', name)
storage=graph_descr['storage']
load=graph_descr.get('load_from', None)
sto_driver, sto_filepath=self.storages[storage]
if contains == None:
graph=rdflib.graph.Graph(
store=sto_driver,
identifier=identifier,
namespace_manager=self.ns_man
)
if sto_filepath is not None:
sto_filepath = os.path.abspath(sto_filepath)
if not os.path.exists(sto_filepath):
os.makedirs(sto_filepath)
graph.open(sto_filepath, create=True)
else:
if sto_driver != 'default':
graph=rdflib.graph.ConjunctiveGraph(sto_driver, identifier=identifier)
if sto_filepath != None:
graph.open(sto_filepath,create=True)
else:
graph=rdflib.graph.Dataset(sto_driver)
for cg in contains.split(','):
cg=cg.strip()
g=self.graphs[cg]
graph.add_graph(g)
if len(graph)==0 and load != None:
try:
graph.parse(load) # FIXME slashes in Windows
graph.commit()
except IOError:
logger.warning ("Cannot load graph from URI:" + load)
for nk,nv in NAMESPACES.items():
graph.bind(nk,nv)
if name=='ns':
self.ns_man=graph
self.graphs[name]=graph
GSM=getGlobalSiteManager()
GSM.registerUtility(graph, IGraph, name=name)
# -*- coding: utf-8 -*-
"""The application's model objects"""
import rdflib
import rdflib.graph
#endpoints = [
#endpoint = "http://redrugs.tw.rpi.edu/bigdata/sparql"
#endpoint = "http://drugbank.bio2rdf.org/sparql"
endpoint = "http://localhost:8080/bigdata/sparql"
# ]
#graphs = []
#for endpoint in endpoints:
graph = rdflib.ConjunctiveGraph('SPARQLStore')
graph.open(endpoint)
def init_model(engine):
"""Call me before using any of the tables or classes in the model."""
#DBSession.configure(bind=engine)
# If you are using reflection to introspect your database and create
# table objects for you, your tables must be defined and mapped inside
# the init_model function, so that the engine is available if you
# use the model outside tg2, you need to make sure this is called before
# you use the model.
#
# See the following example:
#global t_reflected
# -*- coding: utf-8 -*-
"""The application's model objects"""
import rdflib
import rdflib.graph
#endpoints = [
endpoint = "http://redrugs.tw.rpi.edu/bigdata/sparql"
#"http://drugbank.bio2rdf.org/sparql",
# ]
#graphs = []
#for endpoint in endpoints:
graph = rdflib.ConjunctiveGraph('SPARQLStore')
graph.open(endpoint)
def init_model(engine):
"""Call me before using any of the tables or classes in the model."""
#DBSession.configure(bind=engine)
# If you are using reflection to introspect your database and create
# table objects for you, your tables must be defined and mapped inside
# the init_model function, so that the engine is available if you
# use the model outside tg2, you need to make sure this is called before
# you use the model.
#
# See the following example:
#global t_reflected
#t_reflected = Table("Reflected", metadata,