def test_ctf_starfile(self):
files = r.get_file_names('/tmp/ctf.star')
self.assertEqual(files[0],'20160126_BRCA1_GO_0001')
self.assertEqual(files[-1],'20160126_BRCA1_GO_0092')
def test_bad_starfile(self):
with self.assertRaises(TypeError):
with patch('sys.stdout', new=MagicMock()):
r.get_file_names('/tmp/bad.star')
def test_file_not_exists(self):
with self.assertRaises(SystemExit):
with patch('sys.stdout', new=MagicMock()):
r.get_file_names('nonexistant.star')
