def getAggregateTagGroupsByImage(self, imageKey, isKey=True):
metadata = WebServiceArray()
try:
if (isKey):
image = Picture.objects.get(pk__exact=imageKey)
else:
image = imageKey
except (ObjectDoesNotExist, ValueError):
raise Errors.INVALID_IMAGE_KEY
if not image.readPermissions(self.user):
raise Errors.AUTHENTICATION
# initialize tagging APIs
tagGroupAPI = TagGroupAPI(self.limit, self.offset, self.user, self.fields, self.unlimited)
tagAPI = TagAPI(user=self.user, unlimited=True)
geneLinkAPI = GeneLinkAPI(user=self.user, unlimited=True)
tagGroups = tagGroupAPI.getTagGroupsByImage(image, False).getObject()
for group in tagGroups:
tags = tagAPI.getTagsByTagGroup(group['id']).getObject()
for tag in tags:
geneLinks = geneLinkAPI.getGeneLinksByTag(tag['id']).getObject()
tag['geneLinks'] = geneLinks
group['tags'] = tags
metadata.setObject(tagGroups)
return metadata
def getAggregateTagGroups(self):
metadata = WebServiceArray()
# initialize tagging APIs
tagGroupAPI = TagGroupAPI(self.limit, self.offset, self.user, self.fields, self.unlimited)
tagAPI = TagAPI(user=self.user, unlimited=True)
geneLinkAPI = GeneLinkAPI(user=self.user, unlimited=True)
tagGroups = tagGroupAPI.getTagGroups().getObject()
for group in tagGroups:
tags = tagAPI.getTagsByTagGroup(group['id']).getObject()
for tag in tags:
geneLinks = geneLinkAPI.getGeneLinksByTag(tag['id']).getObject()
tag['geneLinks'] = geneLinks
group['tags'] = tags
metadata.setObject(tagGroups)
return metadata
def getImageMetadataForiSearch(self, query):
metadata = WebServiceArray()
imageMetadata = {}
# Image description
iDescImages = Picture.objects.filter(
description__icontains=query[0])[self.offset:self.offset +
self.limit]
# Image notes
iNoteImages = []
picturesIN = []
iNotes = PictureNotes.objects.filter(notes__icontains=query[0])
for note in iNotes:
pictureID = note.picture.pk
if pictureID not in picturesIN:
iNoteImages.extend(Picture.objects.filter(id__exact=pictureID))
picturesIN.append(pictureID)
iNoteImages = iNoteImages[self.offset:self.offset + self.limit]
# Gene name
gNameImages = []
picturesGN = []
pMgdbs = PictureMgdb.objects.filter(
locus_full_name__icontains=query[0])
for pMgdb in pMgdbs:
pictureID = pMgdb.picture.pk
if pictureID not in picturesGN:
gNameImages.extend(Picture.objects.filter(id__exact=pictureID))
picturesGN.append(pictureID)
gNameImages = gNameImages[self.offset:self.offset + self.limit]
# Gene Symbol
gSymbolImages = []
picturesGS = []
pMgdbs = PictureMgdb.objects.filter(locus_name__icontains=query[0])
for pMgdb in pMgdbs:
pictureID = pMgdb.picture.pk
if pictureID not in picturesGS:
gSymbolImages.extend(
Picture.objects.filter(id__exact=pictureID))
picturesGS.append(pictureID)
gSymbolImages = gSymbolImages[self.offset:self.offset + self.limit]
# Gene ID
gIDImages = []
pictureGIs = []
pIDs = PictureGeneID.objects.filter(gene_id__icontains=query[0])
for pID in pIDs:
pictureID = pID.picture.pk
if pictureID not in pictureGIs:
gIDImages.extend(Picture.objects.filter(id__exact=pictureID))
pictureGIs.append(pictureID)
gIDImages = gIDImages[self.offset:self.offset + self.limit]
imageMetadataAPI = ImageMetadataAPI(self.user, self.fields)
for image in iDescImages:
if imageMetadata.has_key(0):
imageMetadata[0]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[0] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
for image in iNoteImages:
if imageMetadata.has_key(1):
imageMetadata[1]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[1] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
for image in gNameImages:
if imageMetadata.has_key(2):
imageMetadata[2]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[2] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
for image in gSymbolImages:
if imageMetadata.has_key(3):
imageMetadata[3]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[3] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
for image in gIDImages:
if imageMetadata.has_key(4):
imageMetadata[4]['images'].append(
imageMetadataAPI.getImageMetadata(image,
False).getObject())
else:
imageMetadata[4] = {
'images': [
imageMetadataAPI.getImageMetadata(image,
False).getObject()
]
}
metadata.setObject(LimitDict(self.fields, imageMetadata))
return metadata
