def __init__(self, excl_fpath, h5_fpath, excl_dict=None,
area_filter_kernel='queen', min_area=None,
check_excl_layers=False):
"""
Parameters
----------
excl_fpath : str
Filepath to exclusions h5 with techmap dataset.
h5_fpath : str
Filepath to .h5 file to be aggregated
excl_dict : dict | None
Dictionary of exclusion LayerMask arugments {layer: {kwarg: value}}
area_filter_kernel : str
Contiguous area filter method to use on final exclusions mask
min_area : float | None
Minimum required contiguous area filter in sq-km
check_excl_layers : bool
Run a pre-flight check on each exclusion layer to ensure they
contain un-excluded values
"""
super().__init__(excl_fpath, excl_dict=excl_dict,
area_filter_kernel=area_filter_kernel,
min_area=min_area,
check_excl_layers=check_excl_layers)
self._h5 = Resource(h5_fpath)
class AggFileHandler(AbstractAggFileHandler):
"""
Framework to handle aggregation file context manager:
- exclusions .h5 file
- h5 file to be aggregated
"""
def __init__(self,
excl_fpath,
h5_fpath,
excl_dict=None,
area_filter_kernel='queen',
min_area=None,
check_excl_layers=False):
"""
Parameters
----------
excl_fpath : str
Filepath to exclusions h5 with techmap dataset.
h5_fpath : str
Filepath to .h5 file to be aggregated
excl_dict : dict | None
Dictionary of exclusion LayerMask arugments {layer: {kwarg: value}}
area_filter_kernel : str
Contiguous area filter method to use on final exclusions mask
min_area : float | None
Minimum required contiguous area filter in sq-km
check_excl_layers : bool
Run a pre-flight check on each exclusion layer to ensure they
contain un-excluded values
"""
super().__init__(excl_fpath,
excl_dict=excl_dict,
area_filter_kernel=area_filter_kernel,
min_area=min_area,
check_excl_layers=check_excl_layers)
self._h5 = Resource(h5_fpath)
@property
def h5(self):
"""
Get the h5 file handler object.
Returns
-------
_h5 : Outputs
reV h5 outputs handler object.
"""
return self._h5
def close(self):
"""Close all file handlers."""
self._excl.close()
self._h5.close()
def __init__(self, h5_file, hsds=False):
"""
Parameters
----------
h5_file : str
.h5 file containing exclusion layers and techmap
hsds : bool
Boolean flag to use h5pyd to handle .h5 'files' hosted on AWS
behind HSDS
"""
self.h5_file = h5_file
self._h5 = Resource(h5_file, hsds=hsds)
self._iarr = None
def _preflight_check(self):
"""
Check time_index and coordinates accross files
"""
time_index = None
lat_lon = None
bad_files = []
for file in self.h5_files:
with Resource(file) as f:
if 'time_index' in f:
ti = f.time_index
if time_index is None:
time_index = ti.copy()
else:
check = time_index.equals(ti)
if not check:
bad_files.append(file)
ll = f.lat_lon
if lat_lon is None:
lat_lon = ll.copy()
else:
check = np.allclose(lat_lon, ll)
if not check:
bad_files.append(file)
bad_files = list(set(bad_files))
if bad_files:
msg = ("The following files' coordinates and time-index do not "
"match:\n{}".format(bad_files))
raise ResourceRuntimeError(msg)
def _parse_gen_index(h5_fpath):
"""Parse gen outputs for an array of generation gids corresponding to
the resource gids.
Parameters
----------
h5_fpath : str
Filepath to reV compliant .h5 file
Returns
-------
gen_index : np.ndarray
Array of generation gids with array index equal to resource gid.
Array value is -1 if the resource index was not used in the
generation run.
"""
with Resource(h5_fpath) as f:
gen_index = f.meta
if 'gid' in gen_index:
gen_index = gen_index.rename(columns={'gid': 'res_gids'})
gen_index['gen_gids'] = gen_index.index
gen_index = gen_index[['res_gids', 'gen_gids']]
gen_index = gen_index.set_index(keys='res_gids')
gen_index = \
gen_index.reindex(range(int(gen_index.index.max() + 1)))
gen_index = gen_index['gen_gids'].values
gen_index[np.isnan(gen_index)] = -1
gen_index = gen_index.astype(np.int32)
else:
gen_index = None
return gen_index
def test_agg_profile():
"""Test aggregation of weighted meanoid profile for each SC point."""
gen_fpath = os.path.join(TESTDATADIR, 'offshore/ri_offshore_baseline.h5')
rev_sc_fpath = os.path.join(TESTDATADIR, 'sc_out/ri_wind_farm_sc.csv')
rev_summary = pd.read_csv(rev_sc_fpath, index_col=0).iloc[0:2]
profiles = AggregatedRepProfiles.run(gen_fpath,
rev_summary,
cf_dset='cf_profile',
scaled_precision=False,
max_workers=None)[0]
for index in rev_summary.index:
gen_gids = json.loads(rev_summary.loc[index, 'gen_gids'])
weights = np.array(json.loads(rev_summary.loc[index, 'gid_counts']))
with Resource(gen_fpath) as res:
raw_profiles = res['cf_profile', :, gen_gids]
last = res['cf_profile', :, gen_gids[-1]]
assert np.allclose(raw_profiles[:, -1], last)
truth = raw_profiles * weights
assert len(truth) == 8760
truth = truth.sum(axis=1)
assert len(truth) == 8760
truth = truth / weights.sum()
assert np.allclose(profiles[0][:, index], truth)
def _combine_dataset(self, dset_name, dset_attrs, process_size=None):
"""
Load data from ds_in to ds_out
Parameters
----------
dset_name : str
Name of dataset to initialize
dset_attrs : dict
Dictionary of dataset and properties and attributes
process_size : int, optional
Ammount of data to be transfered at a time, by default None
"""
logger.info('Combining {}'.format(dset_name))
ds_comb = self._init_dataset(dset_name, dset_attrs)
start = 0
for h5_path in self.source_h5:
logger.debug('Transfering data from {}'.format(
os.path.basename(h5_path)))
with Resource(h5_path) as f:
ds_in = f.h5[dset_name]
self._load_data(ds_in,
ds_comb,
start,
process_size=process_size)
start += ds_in.shape[self._axis]
def get_sites_per_worker(res_file, default=100):
"""Get the nominal sites per worker (x-chunk size) for a given file.
This is based on the concept that it is most efficient for one core to
perform one read on one chunk of resource data, such that chunks will
not have to be read into memory twice and no sites will be read
redundantly.
Parameters
----------
res_file : str
Filepath to single resource file, multi-h5 directory,
or /h5_dir/prefix*suffix
default : int
Sites to be analyzed on a single core if the chunk size cannot be
determined from res_file.
Returns
-------
sites_per_worker : int
Nominal sites to be analyzed per worker. This is set to the x-axis
chunk size for windspeed and dni datasets for the WTK and NSRDB
data, respectively.
"""
if not res_file or not os.path.isfile(res_file):
return default
with Resource(res_file) as res:
if 'wtk' in res_file.lower():
for dset in res.datasets:
if 'speed' in dset:
# take nominal WTK chunks from windspeed
_, _, chunks = res.get_dset_properties(dset)
break
elif 'nsrdb' in res_file.lower():
# take nominal NSRDB chunks from dni
_, _, chunks = res.get_dset_properties('dni')
else:
warn('Could not infer dataset chunk size as the resource type '
'could not be determined from the filename: {}'
.format(res_file))
chunks = None
if chunks is None:
# if chunks not set, go to default
sites_per_worker = default
logger.debug('Sites per worker being set to {} (default) based on '
'no set chunk size in {}.'
.format(sites_per_worker, res_file))
else:
sites_per_worker = chunks[1]
logger.debug('Sites per worker being set to {} based on chunk '
'size of {}.'.format(sites_per_worker, res_file))
return sites_per_worker
def test_meanoid():
"""Test the simple meanoid method"""
sites = np.arange(100)
rev_summary = pd.DataFrame({'gen_gids': sites, 'res_gids': sites})
r = RegionRepProfile(GEN_FPATH, rev_summary)
meanoid = RepresentativeMethods.meanoid(r.source_profiles)
with Resource(GEN_FPATH) as res:
truth_profiles = res['cf_profile', :, sites]
truth = truth_profiles.mean(axis=1).reshape(meanoid.shape)
assert np.allclose(meanoid, truth)
def _combine_coordinates(self):
"""
combine coordinates
"""
logger.info('Combining coordinates')
if 'coordinates' in self.datasets:
with Resource(self.source_h5[0]) as f:
chunks = f.get_dset_properties('coordinates')[-1]
attrs = f.get_attrs('coordinates')
else:
chunks = None
attrs = {}
if self._axis == 1:
coords = None
for h5_path in self.source_h5:
with Resource(h5_path) as f:
c = f.lat_lon
if coords is None:
coords = c
else:
coords = np.append(coords, c, axis=0)
else:
with Resource(self.source_h5[0]) as f:
coords = f.lat_lon
logger.debug('Combined coordinates have:\n'
'shape: {}\n'
'dtype: {}\n'
'chunks: {}'.format(coords.shape, coords.dtype, chunks))
ds = self._dst_h5.create_dataset('coordinates',
shape=coords.shape,
dtype=coords.dtype,
chunks=chunks,
data=coords)
if attrs:
for k, v in attrs.items():
logger.debug("- Transfering attr {}: {}".format(k, v))
ds.attrs[k] = v
def save_agg_to_h5(self, out_fpath, aggregation):
"""
Save aggregated data to disc in .h5 format
Parameters
----------
out_fpath : str
Output .h5 file path
aggregation : dict
Aggregated values for each aggregation dataset
"""
agg_out = aggregation.copy()
meta = agg_out.pop('meta')
for c in meta.columns:
try:
meta[c] = pd.to_numeric(meta[c])
except (ValueError, TypeError):
pass
dsets = []
shapes = {}
attrs = {}
chunks = {}
dtypes = {}
time_index = None
with Resource(self._h5_fpath) as f:
for dset, data in agg_out.items():
dsets.append(dset)
shape = data.shape
shapes[dset] = shape
if len(data.shape) == 2:
if ('time_index' in f) and (shape[0] == f.shape[0]):
if time_index is None:
time_index = f.time_index
attrs[dset] = f.get_attrs(dset=dset)
_, dtype, chunk = f.get_dset_properties(dset)
chunks[dset] = chunk
dtypes[dset] = dtype
Outputs.init_h5(out_fpath,
dsets,
shapes,
attrs,
chunks,
dtypes,
meta,
time_index=time_index)
with Outputs(out_fpath, mode='a') as out:
for dset, data in agg_out.items():
out[dset] = data
def _combine_time_index(self):
"""
Combine time_index
"""
logger.info('Combining time_index')
if self._axis == 0:
time_index = None
chunks = None
attrs = {}
for h5_path in self.source_h5:
with Resource(h5_path) as f:
ti = f.h5['time_index'][...]
attrs.update(f.get_attrs('time_index'))
if time_index is None:
time_index = ti
chunks = f.get_dset_properties('time_index')[-1]
else:
time_index = np.append(time_index, ti)
else:
with Resource(self.source_h5[0]) as f:
time_index = f.h5['time_index'][...]
attrs = f.get_attrs('time_index')
chunks = f.get_dset_properties('time_index')[-1]
logger.debug('Combined time_index has:\n'
'shape: {}\n'
'dtype: {}\n'
'chunks: {}'.format(time_index.shape, time_index.dtype,
chunks))
ds = self._dst_h5.create_dataset('time_index',
shape=time_index.shape,
dtype=time_index.dtype,
chunks=chunks,
data=time_index)
if attrs:
for k, v in attrs.items():
logger.debug("- Transfering attr {}: {}".format(k, v))
ds.attrs[k] = v
def _transfer_global_attrs(self):
"""
Transfer global attributes
"""
global_attrs = {}
for h5_path in self.source_h5:
with Resource(h5_path) as f:
global_attrs.update(f.get_attrs())
if global_attrs:
logger.info('Transfering global attributes')
for k, v in global_attrs.items():
logger.debug("- Transfering {}: {}".format(k, v))
self._dst_h5.attrs[k] = v
def _combine_meta(self):
"""
Combine meta
"""
logger.info('Combining meta')
if self._axis == 1:
meta = None
chunks = None
attrs = {}
for h5_path in self.source_h5:
with Resource(h5_path) as f:
m = f.h5['meta'][...]
attrs.update(f.get_attrs('meta'))
if meta is None:
meta = m
chunks = f.get_dset_properties('meta')[-1]
else:
meta = np.append(meta, m)
else:
with Resource(self.source_h5[0]) as f:
meta = f.h5['meta'][...]
attrs = f.get_attrs('meta')
chunks = f.get_dset_properties('meta')[-1]
logger.debug('Combined meta has:\n'
'shape: {}\n'
'dtype: {}\n'
'chunks: {}'.format(meta.shape, meta.dtype, chunks))
ds = self._dst_h5.create_dataset('meta',
shape=meta.shape,
dtype=meta.dtype,
chunks=chunks,
data=meta)
if attrs:
for k, v in attrs.items():
logger.debug("- Transfering attr {}: {}".format(k, v))
ds.attrs[k] = v
def compute_mean_wind_dirs(res_path, dset, gids, fracs):
"""
Compute mean wind directions for given dset and gids
"""
with Resource(res_path) as f:
wind_dirs = np.radians(f[dset, :, gids])
sin = np.mean(np.sin(wind_dirs) * fracs, axis=1)
cos = np.mean(np.cos(wind_dirs) * fracs, axis=1)
mean_wind_dirs = np.degrees(np.arctan2(sin, cos))
mask = mean_wind_dirs < 0
mean_wind_dirs[mask] += 360
return mean_wind_dirs
def test_to_records_array():
"""
Test converstion of pandas DataFrame to numpy records array for .h5
ingestion
"""
path = os.path.join(TESTDATADIR, 'wtk/ri_100_wtk_2012.h5')
with Resource(path) as f:
meta = f.meta
truth = f.h5['meta'][...]
test = to_records_array(meta)
for c in truth.dtype.names:
msg = "{} did not get converted propertly!".format(c)
assert np.all(test[c] == truth[c]), msg
def datasets(self):
"""
Datasets to combine
Returns
-------
list
"""
if self._datasets is None:
datasets = []
for h5_path in self._source_h5:
with Resource(h5_path) as f:
datasets.append(f.datasets)
self._datasets = list(set(datasets[0]).intersection(*datasets[1:]))
return self._datasets
def _parse_sites(points, res_file=None):
"""Parse project points from list or slice
Parameters
----------
points : str | pd.DataFrame | slice | list
Slice specifying project points, string pointing to a project
points csv, or a dataframe containing the effective csv contents.
res_file : str | NoneType
Optional resource file to find maximum length of project points if
points slice stop is None.
Returns
-------
df : pd.DataFrame
DataFrame mapping sites (gids) to SAM technology (config)
"""
df = pd.DataFrame(columns=['gid', 'config'])
if isinstance(points, (list, tuple)):
# explicit site list, set directly
df['gid'] = points
elif isinstance(points, slice):
stop = points.stop
if stop is None:
if res_file is None:
raise ValueError('Must supply a resource file if '
'points is a slice of type '
' slice(*, None, *)')
multi_h5_res, _ = check_res_file(res_file)
if multi_h5_res:
stop = MultiFileResource(res_file).shape[1]
else:
stop = Resource(res_file).shape[1]
df['gid'] = list(range(*points.indices(stop)))
else:
raise TypeError('Project Points sites needs to be set as a list, '
'tuple, or slice, but was set as: {}'.format(
type(points)))
df['config'] = None
return df
def test_sc_points():
"""Test rep profiles for each SC point."""
sites = np.arange(10)
timezone = np.random.choice([-4, -5, -6, -7], 10)
rev_summary = pd.DataFrame({
'sc_gid': sites,
'gen_gids': sites,
'res_gids': sites,
'timezone': timezone
})
p1 = RepProfiles.run(GEN_FPATH,
rev_summary,
'sc_gid',
weight=None,
max_workers=1)[0]
with Resource(GEN_FPATH) as res:
truth = res['cf_profile', :, slice(0, 10)]
assert np.allclose(p1[0], truth)
def check_agg(agg_out, baseline_h5):
"""
Compare agg_out to baseline data
Parameters
----------
agg_out : dict
Aggregation data
baseline_h5 : str
h5 file containing baseline data
"""
with Resource(baseline_h5) as f:
for dset, test in agg_out.items():
truth = f[dset]
if dset == 'meta':
truth.index.name = None
for c in ['source_gids', 'gid_counts']:
test[c] = test[c].astype(str)
assert_frame_equal(truth, test, check_dtype=False, rtol=0.0001)
else:
assert np.allclose(truth, test, rtol=RTOL, atol=ATOL)
def _check_files(self):
"""Do a preflight check on input files"""
if not os.path.exists(self._excl_fpath):
raise FileNotFoundError('Could not find required exclusions file: '
'{}'.format(self._excl_fpath))
if not os.path.exists(self._h5_fpath):
raise FileNotFoundError('Could not find required h5 file: '
'{}'.format(self._h5_fpath))
with h5py.File(self._excl_fpath, 'r') as f:
if self._tm_dset not in f:
raise FileInputError('Could not find techmap dataset "{}" '
'in exclusions file: {}'.format(
self._tm_dset, self._excl_fpath))
with Resource(self._h5_fpath) as f:
for dset in self._agg_dsets:
if dset not in f:
raise FileInputError('Could not find provided dataset "{}"'
' in h5 file: {}'.format(
dset, self._h5_fpath))
def test_write_to_file():
"""Test rep profiles with file write."""
sites = np.arange(100)
zeros = np.zeros((100, ))
regions = (['r0'] * 7) + (['r1'] * 33) + (['r2'] * 60)
timezone = np.random.choice([-4, -5, -6, -7], 100)
rev_summary = pd.DataFrame({
'gen_gids': sites,
'res_gids': sites,
'res_class': zeros,
'region': regions,
'timezone': timezone
})
fout = os.path.join(TESTDATADIR, 'sc_out/temp_rep_profiles.h5')
p1, m1, _ = RepProfiles.run(GEN_FPATH,
rev_summary,
'region',
fout=fout,
n_profiles=3,
weight=None)
with Resource(fout) as res:
disk_profiles = res['rep_profiles_0']
disk_meta = res.meta
assert 'rep_profiles_2' in res.datasets
assert not np.array_equal(res['rep_profiles_0'], res['rep_profiles_1'])
assert np.allclose(p1[0], disk_profiles)
assert len(disk_meta) == 3
for i in m1.index:
v1 = json.loads(m1.loc[i, 'rep_gen_gid'])
v2 = json.loads(disk_meta.loc[i, 'rep_gen_gid'])
assert v1 == v2
if PURGE_OUT:
os.remove(fout)
def test_file_options():
"""Test rep profiles with file write."""
sites = np.arange(100)
zeros = np.zeros((100, ))
regions = (['r0'] * 7) + (['r1'] * 33) + (['r2'] * 60)
timezone = np.random.choice([-4, -5, -6, -7], 100)
rev_summary = pd.DataFrame({
'gen_gids': sites,
'res_gids': sites,
'res_class': zeros,
'region': regions,
'timezone': timezone
})
fout = os.path.join(TESTDATADIR, 'sc_out/temp_rep_profiles.h5')
p1, _, _ = RepProfiles.run(GEN_FPATH,
rev_summary,
'region',
fout=fout,
n_profiles=3,
save_rev_summary=False,
scaled_precision=True,
weight=None)
with Resource(fout) as res:
dtype = res.get_dset_properties('rep_profiles_0')[1]
attrs = res.get_attrs('rep_profiles_0')
disk_profiles = res['rep_profiles_0']
disk_dsets = res.datasets
assert np.issubdtype(dtype, np.integer)
assert attrs['scale_factor'] == 1000
assert np.allclose(p1[0], disk_profiles)
assert 'rev_summary' not in disk_dsets
if PURGE_OUT:
os.remove(fout)
def distance_upper_bound(self):
"""Get the upper bound on NN distance between excl and res points.
Returns
-------
distance_upper_bound : float
Estimate of the upper bound distance based on the distance between
resource points. Calculated as half of the diagonal between
closest resource points, with an extra 5% margin.
"""
if self._distance_upper_bound is None:
with Resource(self._res_fpath, str_decode=False) as res:
lats = res.get_meta_arr('latitude')
dists = np.abs(lats - np.roll(lats, 1))
dists = dists[(dists != 0)]
self._distance_upper_bound = 1.05 * (2**0.5) * (dists.min() / 2)
logger.info('Distance upper bound was infered to be: {}'.format(
self._distance_upper_bound))
return self._distance_upper_bound
class ExclusionLayers:
"""
Handler of .h5 file and techmap for Exclusion Layers
"""
def __init__(self, h5_file, hsds=False):
"""
Parameters
----------
h5_file : str
.h5 file containing exclusion layers and techmap
hsds : bool
Boolean flag to use h5pyd to handle .h5 'files' hosted on AWS
behind HSDS
"""
self.h5_file = h5_file
self._h5 = Resource(h5_file, hsds=hsds)
self._iarr = None
def __repr__(self):
msg = "{} for {}".format(self.__class__.__name__, self.h5_file)
return msg
def __enter__(self):
return self
def __exit__(self, type, value, traceback):
self.close()
if type is not None:
raise
def __len__(self):
return len(self.layers)
def __getitem__(self, keys):
ds, ds_slice = parse_keys(keys)
if ds.lower().startswith('lat'):
out = self._get_latitude(*ds_slice)
elif ds.lower().startswith('lon'):
out = self._get_longitude(*ds_slice)
else:
out = self._get_layer(ds, *ds_slice)
return out
def close(self):
"""
Close h5 instance
"""
self._h5.close()
@property
def h5(self):
"""
Open h5py File instance.
Returns
-------
h5 : rex.Resource
"""
return self._h5
@property
def iarr(self):
"""Get an array of 1D index values for the flattened h5 excl extent.
Returns
-------
iarr : np.ndarray
Uint array with same shape as exclusion extent, representing the 1D
index values if the geotiff extent was flattened
(with default flatten order 'C')
"""
if self._iarr is None:
N = self.shape[0] * self.shape[1]
self._iarr = np.arange(N, dtype=np.uint32)
self._iarr = self._iarr.reshape(self.shape)
return self._iarr
@property
def profile(self):
"""
GeoTiff profile for exclusions
Returns
-------
profile : dict
"""
return json.loads(self.h5.attrs['profile'])
@property
def crs(self):
"""
GeoTiff projection crs
Returns
-------
str
"""
return self.profile['crs']
@property
def pixel_area(self):
"""Get pixel area in km2 from the transform profile of the excl file.
Returns
-------
area : float
Exclusion pixel area in km2. Will return None if the
appropriate transform attribute is not found.
"""
area = None
if 'transform' in self.profile:
transform = self.profile['transform']
area = np.abs(transform[0] * transform[4])
area /= 1000 ** 2
return area
@property
def layers(self):
"""
Available exclusions layers
Returns
-------
layers : list
"""
layers = self.h5.datasets
return layers
@property
def shape(self):
"""
Exclusion shape (latitude, longitude)
Returns
-------
shape : tuple
"""
shape = self.h5.attrs.get('shape', None)
if shape is None:
shape = self.h5['latitude'].shape
return tuple(shape)
@property
def chunks(self):
"""
Exclusion layers chunks default chunk size
Returns
-------
chunks : tuple | None
Chunk size of exclusion layers
"""
chunks = self.h5.attrs.get('chunks', None)
if chunks is None:
chunks = self.h5['latitude'].chunks
if isinstance(chunks, dict):
chunks = tuple(chunks.get('dims', None))
return chunks
@property
def latitude(self):
"""
Latitude coordinates array
Returns
-------
ndarray
"""
return self['latitude']
@property
def longitude(self):
"""
Longitude coordinates array
Returns
-------
ndarray
"""
return self['longitude']
def get_layer_profile(self, layer):
"""
Get profile for a specific exclusion layer
Parameters
----------
layer : str
Layer to get profile for
Returns
-------
profile : dict | None
GeoTiff profile for single exclusion layer
"""
profile = self.h5.get_attrs(dset=layer).get('profile', None)
if profile is not None:
profile = json.loads(profile)
return profile
def get_layer_crs(self, layer):
"""
Get crs for a specific exclusion layer
Parameters
----------
layer : str
Layer to get profile for
Returns
-------
crs : str | None
GeoTiff projection crs
"""
profile = self.get_layer_profile(layer)
if profile is not None:
crs = profile['crs']
else:
crs = None
return crs
def get_layer_values(self, layer):
"""
Get values for given layer in Geotiff format (bands, y, x)
Parameters
----------
layer : str
Layer to get values for
Returns
-------
values : ndarray
GeoTiff values for single exclusion layer
"""
values = self.h5[layer]
return values
def get_layer_description(self, layer):
"""
Get description for given layer
Parameters
----------
layer : str
Layer to get description for
Returns
-------
description : str
Description of layer
"""
description = self.h5.get_attrs(dset=layer).get('description', None)
return description
def get_nodata_value(self, layer):
"""
Get the nodata value for a given layer
Parameters
----------
layer : str
Layer to get nodata value for
Returns
-------
nodata : int | float | None
nodata value for layer or None if not found
"""
profile = self.get_layer_profile(layer)
nodata = profile.get('nodata', None)
return nodata
def _get_latitude(self, *ds_slice):
"""
Extract latitude coordinates
Parameters
----------
ds_slice : tuple of int | list | slice
Pandas slicing describing which sites and columns to extract
Returns
-------
lat : ndarray
Latitude coordinates
"""
if 'latitude' not in self.h5:
msg = ('"latitude" is missing from {}'
.format(self.h5_file))
logger.error(msg)
raise HandlerKeyError(msg)
ds_slice = ('latitude', ) + ds_slice
lat = self.h5[ds_slice]
return lat
def _get_longitude(self, *ds_slice):
"""
Extract longitude coordinates
Parameters
----------
ds_slice : tuple of int | list | slice
Pandas slicing describing which sites and columns to extract
Returns
-------
lon : ndarray
Longitude coordinates
"""
if 'longitude' not in self.h5:
msg = ('"longitude" is missing from {}'
.format(self.h5_file))
logger.error(msg)
raise HandlerKeyError(msg)
ds_slice = ('longitude', ) + ds_slice
lon = self.h5[ds_slice]
return lon
def _get_layer(self, layer_name, *ds_slice):
"""
Extract data from given dataset
Parameters
----------
layer_name : str
Exclusion layer to extract
ds_slice : tuple of int | list | slice
tuple describing slice of layer array to extract
Returns
-------
layer_data : ndarray
Array of exclusion data
"""
if layer_name not in self.layers:
msg = ('{} not in available layers: {}'
.format(layer_name, self.layers))
logger.error(msg)
raise HandlerKeyError(msg)
shape = self.h5.get_dset_properties(layer_name)[0]
if len(shape) == 3:
ds_slice = (layer_name, 0) + ds_slice
else:
ds_slice = (layer_name, ) + ds_slice
layer_data = self.h5[ds_slice]
return layer_data
def _check_dset_properties(self, dset_name):
"""
Check to ensure dataset is in both domains and extract
dataset attributes
Parameters
----------
dset_name : str
Dataset to check
Returns
-------
attrs : dict
Dataset attributes {k: v}
shape : tuple
Dataset shape
dtype : str | np.dtype
Dataset dtype
chunks : tuple | None
Dataset chunk size
"""
attrs = {}
shape = None
dtype = None
chunks = None
for h5_path in self.source_h5:
with Resource(h5_path) as f:
if dset_name in f:
dset_attrs = f.get_attrs(dset=dset_name)
dset_shape, dset_dtype, dset_chunks = \
f.get_dset_properties(dset_name)
else:
msg = '{} not in {}'.format(dset_name, h5_path)
logger.error(msg)
raise ValueError(msg)
attrs.update(dset_attrs)
if shape is None:
shape = list(dset_shape)
chunks = dset_chunks
dtype = dset_dtype
else:
if dset_chunks != chunks:
msg = ("{} chunks ({} != {}) do not match between source "
"files!".format(dset_name, chunks, dset_chunks))
logger.error(msg)
raise RuntimeError(msg)
if dset_dtype != dtype:
msg = ("{} dtypes ({} != {}) do not match between source "
"files!".format(dset_name, dtype, dset_dtype))
logger.error(msg)
raise RuntimeError(msg)
for i, s in enumerate(dset_shape):
# pylint: disable=unsubscriptable-object
if i != self._axis and s != shape[i]:
msg = ("{} shape ({} != {}) does not match between "
"source files!".format(dset_name, dset_shape,
shape))
logger.error(msg)
raise RuntimeError(msg)
if self._axis <= len(shape):
# pylint: disable=unsupported-assignment-operation
shape[self._axis] += dset_shape[self._axis]
return attrs, tuple(shape), dtype, chunks
def map_resource_gids(cls,
gids,
excl_fpath,
res_fpath,
distance_upper_bound,
map_chunk,
margin=0.1):
"""Map exclusion gids to the resource meta.
Parameters
----------
gids : np.ndarray
Supply curve gids with tech exclusion points to map to the
resource meta points.
excl_fpath : str
Filepath to exclusions h5 (tech layer). dset will be
created in excl_fpath.
res_fpath : str
Filepath to .h5 resource file that we're mapping to.
distance_upper_bound : float | None
Upper boundary distance for KNN lookup between exclusion points and
resource points.
map_chunk : int
Calculation chunk used for the tech mapping calc.
margin : float
Margin when reducing the resource lat/lon.
Returns
-------
ind : list
List of arrays of index values from the NN. List entries correspond
to input gids.
coords : np.ndarray
List of arrays of the un-projected latitude, longitude array of
tech exclusion points. List entries correspond to input gids.
"""
logger.debug(
'Getting tech layer coordinates for chunks {} through {}'.format(
gids[0], gids[-1]))
ind_out = []
coord_labels = ['latitude', 'longitude']
with SupplyCurveExtent(excl_fpath, resolution=map_chunk) as sc:
coords_out, lat_range, lon_range = cls._unpack_coords(
gids, sc, excl_fpath, coord_labels=coord_labels)
with Resource(res_fpath, str_decode=False) as res:
res_meta = np.vstack((res.get_meta_arr(coord_labels[0]),
res.get_meta_arr(coord_labels[1]))).T
mask = ((res_meta[:, 0] > lat_range[0] - margin)
& (res_meta[:, 0] < lat_range[1] + margin)
& (res_meta[:, 1] > lon_range[0] - margin)
& (res_meta[:, 1] < lon_range[1] + margin))
# pylint: disable-msg=C0121
mask_ind = np.where(mask == True)[0] # noqa: E712
if np.sum(mask) > 0:
# pylint: disable=not-callable
res_tree = cKDTree(res_meta[mask, :])
logger.debug(
'Running tech mapping for chunks {} through {}'.format(
gids[0], gids[-1]))
for i, _ in enumerate(gids):
dist, ind = res_tree.query(coords_out[i])
ind = mask_ind[ind]
ind[(dist > distance_upper_bound)] = -1
ind_out.append(ind)
else:
logger.debug('No close res points for chunks {} through {}'.format(
gids[0], gids[-1]))
for _ in gids:
ind_out.append(-1)
return ind_out, coords_out