def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copy_right) = ('RJE_EXONERATE', '0.5.0', 'May 2018', '2018')
description = 'Runs Exonerate and parses output'
author = 'Dr Richard J. Edwards & Timothy G. Amos.'
comments = ['This program is still in development and has not been published.',rje_obj.zen()]
return rje.Info(program,version,last_edit,description,author,time.time(),copy_right,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copyright) = ('RJE_PRICE', '0.0', 'August 2009', '2009')
description = 'Experimental Price Equation Tool'
author = 'Dr Richard J. Edwards & Dr Joel D. Parker.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyright,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, cyear) = ('RJE_HTML', '0.3.0', 'April 2018', '2010')
description = 'RJE HTML Module'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),cyear,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copyright) = ('RJE_SSDS', '0.0', 'December 2009', '2009')
description = 'SSDS Batch Wrapper'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyright,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copyright) = ('SeqMapper', '2.0', 'February 2013', '2006')
description = 'Sequence Mapping Program'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyright,comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copy_right) = ('RJE_QSUB', '1.9.2', 'May 2018', '2006')
description = 'QSub Generating module'
author = 'Dr Richard J. Edwards.'
comments = [rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copy_right,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copy_right) = ('RJE_Rmd', '0.0.0', 'February 2019', '2019')
description = 'R Markdown generation and execution module'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_obj.zen()]
return rje.Info(program,version,last_edit,description,author,time.time(),copy_right,comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit) = ('RJE_MOTIFOCC', '0.0', 'January 2007')
description = 'Motif Occurrence Module'
author = 'Dr Richard J. Edwards.'
return rje.Info(program, version, last_edit, description, author,
time.time())
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copyright) = ('PICSI', '1.2', 'March 2014', '2010')
description = 'Proteomics Identification from Cross-Species Inference'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyright,comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('RJE_SLiMFunGo', '0.0', 'June 2008', '2008')
description = 'SLiM Functional GO classification module'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyright,comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('RJE_GO', '1.2', 'May 2010', '2008')
description = 'Gene Ontology Parsing/Manipulation Module'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyright,comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, cyear) = ('RJE_ZEN', '1.4.0', 'December 2017', '2007')
description = 'Random Zen Wisdom Generator'
author = 'Dr Richard J. Edwards.'
comments = ['WARNING: These wisdoms are computer-generated garbage.', 'Heed them at your own peril.']
return rje.Info(program,version,last_edit,description,author,time.time(),cyear,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copyyear) = ('rje_samtools', '0.2.0', 'December 2015', '2013')
description = 'RJE SAMtools parser and processor'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyyear,comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyyear) = ('RJE_XGMML', '1.0', 'June 2014', '2007')
description = 'RJE XGMLL Module'
author = 'Dr Richard J. Edwards.'
comments = [rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyyear,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copy_right) = ('SLiMParser', '0.5.0', 'September 2017', '2014')
description = 'SLiMSuite REST output parsing tool'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_obj.zen()]
return rje.Info(program,version,last_edit,description,author,time.time(),copy_right,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copyright) = ('SLiMGOER', '0.1', 'September 2008', '2008')
description = 'Short Linear Motif GO Enrichment of RLC'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyright,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copyright) = ('SCAP', '0.0', 'January 2009', '2009')
description = 'Sequence Composition Assessment of Peptides'
author = 'Dr Richard J. Edwards.'
comments = ['This program is still in development and has not been published.',rje_zen.Zen().wisdom()]
return rje.Info(program,version,last_edit,description,author,time.time(),copyright,comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit) = ('RJE_HPRD', '1.2', 'June 2008')
description = 'HPRD Database processing module'
author = 'Dr Richard J. Edwards.'
return rje.Info(program, version, last_edit, description, author,
time.time())
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copyyear) = ('SLiMMaker', '1.7.0', 'January 2017', '2012')
description = 'SLiM generator from aligned peptide sequences'
author = 'Dr Richard J. Edwards.'
comments = ['Cite: Palopoli N, Lythgow KT & Edwards RJ. Bioinformatics 2015; doi: 10.1093/bioinformatics/btv155 [PMID: 25792551]',
'Please report bugs to [email protected]']
return rje.Info(program,version,last_edit,description,author,time.time(),copyyear,comments)
def makeInfo(): ### Makes Info object which stores program details, mainly for initial print to screen.
'''Makes Info object which stores program details, mainly for initial print to screen.'''
(program, version, last_edit, copy_right) = ('GASP', '2.0.0', 'March 2016', '2004')
description = 'Gapped Ancestral Sequence Prediction'
author = 'Dr Richard J. Edwards.'
comments = ['Cite: Edwards & Shields (2004), BMC Bioinformatics 5(1):123. [PMID: 15350199]',
'Please report bugs to [email protected]']
return rje.Info(program,version,last_edit,description,author,time.time(),copy_right,comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('G-QUAD', '0.0', 'March 2008',
'2008')
description = 'Custom G-Quadruplex Analysis Tool'
author = 'Dr Richard J. Edwards.'
comments = [rje_zen.Zen().wisdom()]
return rje.Info(program, version, last_edit, description, author,
time.time(), copyright, comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('RJE_XML', '0.2',
'January 2013', '2006')
description = 'XML Parsing Module'
author = 'Dr Richard J. Edwards.'
comments = [rje_zen.Zen().wisdom()]
return rje.Info(program, version, last_edit, description, author,
time.time(), copyright, comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('RJE_PHOS', '0.0',
'October 2007', '2007')
description = 'RJE Phosphorylation Module'
author = 'Dr Richard J. Edwards.'
comments = [rje_zen.Zen().wisdom()]
return rje.Info(program, version, last_edit, description, author,
time.time(), copyright, comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, cyear) = ('RJE_DISORDER', '0.8',
'August 2014', '2008')
description = 'Disorder Prediction Module'
author = 'Dr Richard J. Edwards.'
comments = [
'This program is still in development and has not been published.'
]
return rje.Info(program, version, last_edit, description, author,
time.time(), cyear, comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('RJE_MC58', '0.0', 'June 2008',
'2008')
description = 'Custom analysis pipeline for MC58 data'
author = 'Dr Richard J. Edwards.'
comments = [
'This program is still in development and has not been published.',
rje_zen.Zen().wisdom()
]
return rje.Info(program, version, last_edit, description, author,
time.time(), copyright, comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, cyear) = ('SLiMPID', '0.0', 'June 2008',
'2008')
description = 'Short Linear Motif Protein Interaction Datasets'
author = 'Dr Richard J. Edwards.'
comments = [
'This program is still in development and has not been published.',
rje_zen.Zen().wisdom()
]
return rje.Info(program, version, last_edit, description, author,
time.time(), cyear, comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('RJE_HMM', '1.3',
'February 2009', '2007')
description = 'RJE HMM Module'
author = 'Dr Richard J. Edwards.'
comments = [
'This program is under development and may contain bugs!',
rje_zen.Zen().wisdom()
]
return rje.Info(program, version, last_edit, description, author,
time.time(), copyright, comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('RJE_SEQPLOT', '0.0',
'June 2008', '2008')
description = 'Sequence plotting module'
author = 'Dr Richard J. Edwards.'
comments = [
'This program is still in development and has not been published.',
'This program is designed to be used with the plotting webservers of Norman Davey'
]
return rje.Info(program, version, last_edit, description, author,
time.time(), copyright, comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('UNIFAKE', '1.3', 'April 2012',
'2008')
description = 'Fake UniProt DAT File Generator'
author = 'Dr Richard J. Edwards.'
comments = [
'This program is still in development and has not been published.',
rje_zen.Zen().wisdom()
]
return rje.Info(program, version, last_edit, description, author,
time.time(), copyright, comments)
def makeInfo(): ### Makes Info object
'''Makes rje.Info object for program.'''
(program, version, last_edit, copyright) = ('RJE_OMIM', '0.1',
'August 2007', '2007')
description = 'OMIM Parsing Module'
author = 'Dr Richard J. Edwards.'
comments = [
'Please attain author\'s permission to run as standalone application',
rje_zen.Zen().wisdom()
]
return rje.Info(program, version, last_edit, description, author,
time.time(), copyright, comments)