def load_entry(self,
index,
label,
group,
transportGroup,
reference=None,
referenceType='',
shortDesc='',
longDesc='',
):
"""
Method for parsing entries in database files.
Note that these argument names are retained for backward compatibility.
"""
if (group[0:3].upper() == 'OR{' or
group[0:4].upper() == 'AND{' or
group[0:7].upper() == 'NOT OR{' or
group[0:8].upper() == 'NOT AND{'):
item = make_logic_node(group)
else:
item = Group().from_adjacency_list(group)
self.entries[label] = Entry(
index=index,
label=label,
item=item,
data=transportGroup,
reference=reference,
reference_type=referenceType,
short_desc=shortDesc,
long_desc=longDesc.strip(),
)
def load_entry(self, index, label, group, kinetics, reference=None, referenceType='', shortDesc='', longDesc='',
nodalDistance=None):
"""
Method for parsing entries in database files.
Note that these argument names are retained for backward compatibility.
nodal_distance is the distance between a given entry and its parent specified by a float
"""
if (group[0:3].upper() == 'OR{' or
group[0:4].upper() == 'AND{' or
group[0:7].upper() == 'NOT OR{' or
group[0:8].upper() == 'NOT AND{'):
item = make_logic_node(group)
else:
item = Group().from_adjacency_list(group)
if label in self.entries:
raise DatabaseError("Duplicate group name {label} found in kinetics groups for {family} "
"family.".format(label=label, family=self.label))
self.entries[label] = Entry(
index=index,
label=label,
item=item,
data=kinetics,
reference=reference,
reference_type=referenceType,
short_desc=shortDesc,
long_desc=longDesc.strip(),
nodal_distance=nodalDistance
)
def load_entry(
self,
index,
label,
group,
distances,
reference=None,
reference_type='',
short_desc='',
long_desc=''):
if group[0:3].upper() == 'OR{' or group[0:4].upper(
) == 'AND{' or group[0:7].upper() == 'NOT OR{' or group[0:8].upper() == 'NOT AND{':
item = make_logic_node(group)
else:
item = Group().from_adjacency_list(group)
self.entries[label] = Entry(
index=index,
label=label,
item=item,
data=distances,
reference=reference,
reference_type=reference_type,
short_desc=short_desc,
long_desc=long_desc.strip(),
)