def test_format_trimmomatic_output_files_single():
read1 = project.Read("1.fastq.gz")
lane = project.Lane("L001", reads=[read1])
expected = "./L001/output.fastq.gz"
assert_equal(trimmostar.format_trimmomatic_output_files(".", "single",
lane),
expected)
def test_format_trimmomatic_output_files_paired():
read1 = project.Read("1.fastq.gz")
read2 = project.Read("2.fastq.gz")
lane = project.Lane("L001", reads=[read1, read2])
expected = ("./L001/output_paired_1.fastq.gz "
"./L001/output_unpaired_1.fastq.gz "
"./L001/output_paired_2.fastq.gz "
"./L001/output_unpaired_2.fastq.gz")
assert_equal(trimmostar.format_trimmomatic_output_files(".", "paired",
lane),
expected)
