def test_main_transfer_unsuccessfull(self, mock_parse, mock_get_config,
mock_calc, mock_gen, mock_init,
mock_get_gsms_transferred,
mock_find_gsms,
mock_write_transfer_script,
mock_execute, mock_append, mock_os):
mock_get_config.return_value = {
'LOCAL_TOP_OUTDIR': 'l_top_outdir',
'REMOTE_TOP_OUTDIR': 'r_top_outdir',
'REMOTE_HOST': 'remote',
'USERNAME': '******',
'REMOTE_CMD_DF': 'df -k -P target_dir',
'REMOTE_MAX_USAGE': '50 GB',
'REMOTE_MIN_FREE': '20 GB',
'FASTQ2RSEM_RATIO': 5,
}
mock_calc.return_value = 40
m1 = mock.Mock()
m1.outdir = 'l_top_outdir/rsemoutput/GSE1/homo_sapiens/GSM1'
m1.name = 'GSM1'
m2 = mock.Mock()
m2.outdir = 'l_top_outdir/rsemoutput/GSE2/homo_sapiens/GSM2'
m2.name = 'GSM2'
mock_find_gsms.return_value = [m1, m2]
mock_execute.return_value = 1
RP_T.main()
self.assertTrue(mock_execute.called)
self.assertFalse(mock_append.called)
def test_main_transfer_unsuccessfull(
self, mock_parse, mock_get_config, mock_calc, mock_gen, mock_init,
mock_get_gsms_transferred, mock_find_gsms, mock_write_transfer_script,
mock_execute, mock_append, mock_os):
mock_get_config.return_value = {
'LOCAL_TOP_OUTDIR': 'l_top_outdir',
'REMOTE_TOP_OUTDIR': 'r_top_outdir',
'REMOTE_HOST': 'remote',
'USERNAME': '******',
'REMOTE_CMD_DF': 'df -k -P target_dir',
'REMOTE_MAX_USAGE': '50 GB',
'REMOTE_MIN_FREE': '20 GB',
'FASTQ2RSEM_RATIO': 5,
}
mock_calc.return_value = 40
m1 = mock.Mock()
m1.outdir = 'l_top_outdir/rsemoutput/GSE1/homo_sapiens/GSM1'
m1.name = 'GSM1'
m2 = mock.Mock()
m2.outdir = 'l_top_outdir/rsemoutput/GSE2/homo_sapiens/GSM2'
m2.name = 'GSM2'
mock_find_gsms.return_value = [m1, m2]
mock_execute.return_value = 1
RP_T.main()
self.assertTrue(mock_execute.called)
self.assertFalse(mock_append.called)
def test_main_no_GSM_found_for_transfer(
self, mock_parse, mock_get_config, mock_calc, mock_gen, mock_init,
mock_get_gsms_transferred, mock_find_gsms,
mock_write_transfer_script, mock_execute, mock_append, mock_os):
mock_get_config.return_value = {
'LOCAL_TOP_OUTDIR': 'l_top_outdir',
'REMOTE_TOP_OUTDIR': 'r_top_outdir',
'REMOTE_HOST': 'remote',
'USERNAME': '******',
'REMOTE_CMD_DF': 'df -k -P target_dir',
'REMOTE_MAX_USAGE': '50 GB',
'REMOTE_MIN_FREE': '20 GB',
'FASTQ2RSEM_RATIO': 5,
}
mock_calc.return_value = 40
mock_find_gsms.return_value = []
mock_execute.return_value = 0
RP_T.main()
self.assertFalse(mock_write_transfer_script.called)
self.assertFalse(mock_execute.called)
def test_main_no_GSM_found_for_transfer(
self, mock_parse, mock_get_config, mock_calc, mock_gen, mock_init,
mock_get_gsms_transferred, mock_find_gsms, mock_write_transfer_script,
mock_execute, mock_append, mock_os):
mock_get_config.return_value = {
'LOCAL_TOP_OUTDIR': 'l_top_outdir',
'REMOTE_TOP_OUTDIR': 'r_top_outdir',
'REMOTE_HOST': 'remote',
'USERNAME': '******',
'REMOTE_CMD_DF': 'df -k -P target_dir',
'REMOTE_MAX_USAGE': '50 GB',
'REMOTE_MIN_FREE': '20 GB',
'FASTQ2RSEM_RATIO': 5,
}
mock_calc.return_value = 40
mock_find_gsms.return_value = []
mock_execute.return_value = 0
RP_T.main()
self.assertFalse(mock_write_transfer_script.called)
self.assertFalse(mock_execute.called)
